Wall clock time and date at job start Tue Mar 31 2020 22:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99763 * 2 1 4 4 C 1.53002 * 109.46841 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47373 * 65.00428 * 4 3 2 6 6 C 1.46765 * 124.35060 * 270.00414 * 5 4 3 7 7 C 1.54475 * 105.47589 * 197.03109 * 6 5 4 8 8 H 1.09007 * 110.99821 * 92.71384 * 7 6 5 9 9 C 1.50696 * 110.97232 * 216.46302 * 7 6 5 10 10 O 1.21284 * 119.99748 * 353.83310 * 9 7 6 11 11 N 1.34771 * 120.00030 * 173.83450 * 9 7 6 12 12 C 1.46506 * 120.00127 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.46827 * 325.00009 * 12 11 9 14 14 C 1.53001 * 109.46909 * 84.99693 * 12 11 9 15 15 C 1.52995 * 109.47086 * 204.99948 * 12 11 9 16 16 C 1.53947 * 113.74136 * 179.97438 * 15 12 11 17 17 N 1.47584 * 86.11565 * 269.25964 * 16 15 12 18 18 C 1.36935 * 134.49069 * 155.35638 * 17 16 15 19 19 H 1.08000 * 120.00181 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99885 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00202 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47059 * 59.99570 * 22 20 18 24 24 H 1.48495 * 109.47067 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47025 * 300.00413 * 22 20 18 26 26 C 1.47576 * 91.01498 * 335.35788 * 17 16 15 27 27 C 1.54632 * 101.76377 * 334.58536 * 7 6 5 28 28 C 1.34420 * 124.35050 * 90.01625 * 5 4 3 29 29 O 1.21284 * 124.94238 * 359.54906 * 28 5 4 30 30 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46745 * 299.99350 * 1 2 3 32 32 H 1.08993 * 109.47720 * 59.98939 * 1 2 3 33 33 H 1.08992 * 109.47225 * 60.00947 * 3 2 1 34 34 H 1.08997 * 109.47738 * 300.00273 * 3 2 1 35 35 H 1.08999 * 109.47505 * 305.00589 * 4 3 2 36 36 H 1.09001 * 109.47419 * 184.99946 * 4 3 2 37 37 H 1.09005 * 110.24687 * 78.02847 * 6 5 4 38 38 H 1.09003 * 110.24518 * 316.03585 * 6 5 4 39 39 H 0.96999 * 120.00064 * 359.97438 * 11 9 7 40 40 H 1.08992 * 109.47163 * 60.00205 * 14 12 11 41 41 H 1.09002 * 109.46625 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47160 * 299.99934 * 14 12 11 43 43 H 1.08997 * 113.01989 * 311.65634 * 15 12 11 44 44 H 1.09001 * 113.76955 * 23.55999 * 16 15 12 45 45 H 1.08997 * 113.77064 * 154.96076 * 16 15 12 46 46 H 0.96998 * 120.00287 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.77250 * 270.33779 * 26 17 16 48 48 H 1.08995 * 113.76824 * 138.94137 * 26 17 16 49 49 H 1.09001 * 110.48531 * 143.47621 * 27 7 6 50 50 H 1.09000 * 110.48000 * 266.11494 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1380 -0.8809 -1.4488 7 6 5.0088 -1.0299 -2.7159 8 1 6.0656 -1.0992 -2.4577 9 6 4.5763 -2.2215 -3.5307 10 8 3.7289 -2.9750 -3.1003 11 7 5.1310 -2.4499 -4.7375 12 6 4.7101 -3.6081 -5.5298 13 1 4.4854 -4.4415 -4.8641 14 6 3.4604 -3.2477 -6.3356 15 6 5.8356 -4.0082 -6.4858 16 6 5.4959 -5.2220 -7.3697 17 7 6.0859 -6.0432 -6.2948 18 6 5.9325 -7.3404 -5.8840 19 1 5.2450 -7.9930 -6.4016 20 6 6.6612 -7.8170 -4.8030 21 7 7.4993 -7.0218 -4.1724 22 14 6.4524 -9.5868 -4.2430 23 1 6.8165 -10.5035 -5.3532 24 1 7.3367 -9.8451 -3.0783 25 1 5.0385 -9.8190 -3.8529 26 6 6.9078 -4.9048 -5.8404 27 6 4.7072 0.2901 -3.4627 28 6 4.2832 1.2462 -2.3697 29 8 4.2282 2.4524 -2.4847 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8515 0.5681 0.8408 36 1 3.9785 2.1765 0.0889 37 1 3.1670 -1.3523 -1.6008 38 1 4.6426 -1.3237 -0.5900 39 1 5.8085 -1.8471 -5.0818 40 1 3.6851 -2.4144 -7.0013 41 1 3.1470 -4.1096 -6.9248 42 1 2.6586 -2.9627 -5.6545 43 1 6.2455 -3.1632 -7.0390 44 1 4.4261 -5.3802 -7.5065 45 1 6.0550 -5.2548 -8.3048 46 1 8.0083 -7.3547 -3.4168 47 1 7.8817 -4.8443 -6.3262 48 1 6.9653 -4.8096 -4.7561 49 1 5.6022 0.6574 -3.9649 50 1 3.8983 0.1467 -4.1791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969787591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:11 Heat of formation + Delta-G solvation = -56.483841 kcal Electronic energy + Delta-G solvation = -30458.553754 eV Core-core repulsion = 26295.027740 eV Total energy + Delta-G solvation = -4163.526014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95517 -39.48508 -38.17581 -38.02306 -36.30870 -34.60833 -33.62838 -32.12664 -30.45469 -29.24064 -27.82205 -27.54603 -26.59473 -25.00825 -24.13209 -23.51859 -22.92442 -21.44485 -20.03987 -19.61194 -18.71063 -17.45093 -17.19442 -16.76178 -16.67657 -16.14060 -16.06811 -15.64047 -15.35770 -15.04601 -14.83542 -14.66687 -14.01086 -13.85728 -13.78661 -13.57894 -13.33795 -13.16968 -12.87112 -12.64895 -12.51795 -12.39420 -12.23506 -11.95632 -11.87938 -11.63075 -11.48819 -11.38509 -11.26496 -10.90187 -10.79409 -10.66092 -10.31679 -10.19497 -9.96929 -9.86740 -9.73116 -9.56280 -9.35641 -8.91164 -8.81494 -8.68172 -6.83855 -5.72670 -3.04476 2.36522 2.68986 2.80010 3.32412 3.43139 3.47256 3.48086 3.49017 4.10823 4.19288 4.49909 4.66562 4.68297 4.70600 4.84724 4.92963 5.07843 5.08684 5.10295 5.18267 5.21088 5.26494 5.32198 5.35190 5.41423 5.44335 5.45735 5.57126 5.60514 5.75641 5.89735 5.91786 6.04049 6.10118 6.27818 6.28505 6.46303 6.54069 6.67217 6.72786 6.78660 6.87903 6.92612 7.22534 7.35193 7.60229 7.74709 7.94684 8.02613 8.43940 9.08809 9.75456 10.63908 11.44257 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.002640 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.214986 B =10602.131748 C =11383.819135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.611 5.611 6 C 0.123 3.877 7 C -0.126 4.126 8 H 0.119 0.881 9 C 0.525 3.475 10 O -0.529 6.529 11 N -0.714 5.714 12 C 0.168 3.832 13 H 0.103 0.897 14 C -0.158 4.158 15 C -0.149 4.149 16 C 0.125 3.875 17 N -0.610 5.610 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.167 3.833 27 C -0.144 4.144 28 C 0.520 3.480 29 O -0.538 6.538 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.074 0.926 49 H 0.110 0.890 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 19.048 5.160 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.036 4.036 4 C 0.007 3.993 5 N -0.345 5.345 6 C 0.000 4.000 7 C -0.148 4.148 8 H 0.137 0.863 9 C 0.309 3.691 10 O -0.405 6.405 11 N -0.364 5.364 12 C 0.064 3.936 13 H 0.121 0.879 14 C -0.216 4.216 15 C -0.169 4.169 16 C -0.001 4.001 17 N -0.336 5.336 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.042 3.958 27 C -0.184 4.184 28 C 0.308 3.692 29 O -0.415 6.415 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.230 0.770 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.093 0.907 49 H 0.129 0.871 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.608 18.692 5.702 21.354 hybrid contribution 0.244 -0.600 0.064 0.650 sum -8.365 18.092 5.766 20.749 Atomic orbital electron populations 1.22737 0.80942 1.03000 0.99703 1.87935 1.19776 1.27194 1.95371 1.23032 0.94316 0.85506 1.00784 1.21436 0.92243 0.99741 0.85855 1.48231 1.66150 1.08072 1.12020 1.22004 1.01630 0.79758 0.96643 1.22288 1.02828 0.93547 0.96093 0.86305 1.19902 0.81904 0.85750 0.81495 1.90747 1.32042 1.47558 1.70194 1.46016 1.42596 1.29288 1.18511 1.20688 0.92659 0.87842 0.92384 0.87911 1.22143 0.97892 1.01595 1.00000 1.23456 0.98236 0.97105 0.98112 1.22597 0.97283 0.88252 0.91978 1.45986 1.47116 1.08793 1.31754 1.18958 1.19929 0.85703 1.10501 0.90426 1.24744 0.98880 0.98121 0.98530 1.69790 1.29235 1.34573 1.23172 0.86238 0.77465 0.84382 0.77916 1.21313 1.21600 1.21039 1.22272 0.90926 0.82965 0.99686 1.22334 1.04851 0.93384 0.97855 1.20808 0.76269 0.88046 0.84079 1.90718 1.54727 1.13640 1.82423 0.89388 0.94232 0.94207 0.92247 0.92899 0.89159 0.88375 0.88381 0.89709 0.77024 0.93110 0.91325 0.92790 0.91769 0.93487 0.94792 0.93714 0.95790 0.90729 0.87137 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.06 10.53 -35.23 -0.37 -4.43 16 3 C 0.04 0.36 6.28 37.16 0.23 0.59 16 4 C 0.13 1.11 6.32 -4.04 -0.03 1.08 16 5 N -0.61 -6.38 2.88 -172.41 -0.50 -6.88 16 6 C 0.12 1.33 6.54 -3.12 -0.02 1.31 16 7 C -0.13 -1.28 3.54 -90.14 -0.32 -1.60 16 8 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 9 C 0.53 7.41 7.04 -10.99 -0.08 7.33 16 10 O -0.53 -9.81 15.23 5.55 0.08 -9.73 16 11 N -0.71 -9.50 5.03 -53.80 -0.27 -9.77 16 12 C 0.17 2.76 2.36 -67.93 -0.16 2.60 16 13 H 0.10 2.24 7.42 -51.93 -0.39 1.85 16 14 C -0.16 -2.24 9.28 37.16 0.34 -1.89 16 15 C -0.15 -2.55 3.56 -89.70 -0.32 -2.87 16 16 C 0.13 2.44 8.30 -2.97 -0.02 2.41 16 17 N -0.61 -15.28 3.56 -177.91 -0.63 -15.92 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.23 11.38 55.49 0.63 -26.60 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 26 C 0.17 3.75 7.04 -2.98 -0.02 3.73 16 27 C -0.14 -1.33 6.37 -26.74 -0.17 -1.50 16 28 C 0.52 6.09 8.02 -10.86 -0.09 6.00 16 29 O -0.54 -7.97 17.60 5.55 0.10 -7.87 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.77 7.93 -51.93 -0.41 0.36 16 37 H 0.10 1.30 7.06 -51.93 -0.37 0.93 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.99 6.49 -51.93 -0.34 0.65 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.87 6.44 -51.93 -0.33 0.53 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.07 1.88 7.11 -51.93 -0.37 1.51 16 49 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.11 1.01 7.89 -51.93 -0.41 0.60 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -35.75 408.01 -8.05 -43.80 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.43 Total: 1.97 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 0.21 Total: 11.89 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.77 Total: -59.17 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.19 Total: -22.03 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.75 -8.05 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.683 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds