Wall clock time and date at job start Tue Mar 31 2020 22:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99763 * 2 1 4 4 C 1.53002 * 109.46841 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47373 * 65.00428 * 4 3 2 6 6 C 1.46765 * 124.35060 * 270.00414 * 5 4 3 7 7 C 1.54475 * 105.47589 * 197.03109 * 6 5 4 8 8 H 1.09007 * 110.99821 * 92.71384 * 7 6 5 9 9 C 1.50696 * 110.97232 * 216.46302 * 7 6 5 10 10 O 1.21284 * 119.99748 * 353.83310 * 9 7 6 11 11 N 1.34771 * 120.00030 * 173.83450 * 9 7 6 12 12 C 1.46506 * 120.00127 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.46827 * 325.00009 * 12 11 9 14 14 C 1.53001 * 109.46909 * 84.99693 * 12 11 9 15 15 C 1.52995 * 109.47086 * 204.99948 * 12 11 9 16 16 C 1.53947 * 113.74136 * 179.97438 * 15 12 11 17 17 N 1.47584 * 86.11565 * 269.25964 * 16 15 12 18 18 C 1.36935 * 134.49069 * 155.35638 * 17 16 15 19 19 H 1.08000 * 120.00181 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99885 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00202 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47059 * 59.99570 * 22 20 18 24 24 H 1.48495 * 109.47067 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47025 * 300.00413 * 22 20 18 26 26 C 1.47576 * 91.01498 * 335.35788 * 17 16 15 27 27 C 1.54632 * 101.76377 * 334.58536 * 7 6 5 28 28 C 1.34420 * 124.35050 * 90.01625 * 5 4 3 29 29 O 1.21284 * 124.94238 * 359.54906 * 28 5 4 30 30 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46745 * 299.99350 * 1 2 3 32 32 H 1.08993 * 109.47720 * 59.98939 * 1 2 3 33 33 H 1.08992 * 109.47225 * 60.00947 * 3 2 1 34 34 H 1.08997 * 109.47738 * 300.00273 * 3 2 1 35 35 H 1.08999 * 109.47505 * 305.00589 * 4 3 2 36 36 H 1.09001 * 109.47419 * 184.99946 * 4 3 2 37 37 H 1.09005 * 110.24687 * 78.02847 * 6 5 4 38 38 H 1.09003 * 110.24518 * 316.03585 * 6 5 4 39 39 H 0.96999 * 120.00064 * 359.97438 * 11 9 7 40 40 H 1.08992 * 109.47163 * 60.00205 * 14 12 11 41 41 H 1.09002 * 109.46625 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47160 * 299.99934 * 14 12 11 43 43 H 1.08997 * 113.01989 * 311.65634 * 15 12 11 44 44 H 1.09001 * 113.76955 * 23.55999 * 16 15 12 45 45 H 1.08997 * 113.77064 * 154.96076 * 16 15 12 46 46 H 0.96998 * 120.00287 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.77250 * 270.33779 * 26 17 16 48 48 H 1.08995 * 113.76824 * 138.94137 * 26 17 16 49 49 H 1.09001 * 110.48531 * 143.47621 * 27 7 6 50 50 H 1.09000 * 110.48000 * 266.11494 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1380 -0.8809 -1.4488 7 6 5.0088 -1.0299 -2.7159 8 1 6.0656 -1.0992 -2.4577 9 6 4.5763 -2.2215 -3.5307 10 8 3.7289 -2.9750 -3.1003 11 7 5.1310 -2.4499 -4.7375 12 6 4.7101 -3.6081 -5.5298 13 1 4.4854 -4.4415 -4.8641 14 6 3.4604 -3.2477 -6.3356 15 6 5.8356 -4.0082 -6.4858 16 6 5.4959 -5.2220 -7.3697 17 7 6.0859 -6.0432 -6.2948 18 6 5.9325 -7.3404 -5.8840 19 1 5.2450 -7.9930 -6.4016 20 6 6.6612 -7.8170 -4.8030 21 7 7.4993 -7.0218 -4.1724 22 14 6.4524 -9.5868 -4.2430 23 1 6.8165 -10.5035 -5.3532 24 1 7.3367 -9.8451 -3.0783 25 1 5.0385 -9.8190 -3.8529 26 6 6.9078 -4.9048 -5.8404 27 6 4.7072 0.2901 -3.4627 28 6 4.2832 1.2462 -2.3697 29 8 4.2282 2.4524 -2.4847 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8515 0.5681 0.8408 36 1 3.9785 2.1765 0.0889 37 1 3.1670 -1.3523 -1.6008 38 1 4.6426 -1.3237 -0.5900 39 1 5.8085 -1.8471 -5.0818 40 1 3.6851 -2.4144 -7.0013 41 1 3.1470 -4.1096 -6.9248 42 1 2.6586 -2.9627 -5.6545 43 1 6.2455 -3.1632 -7.0390 44 1 4.4261 -5.3802 -7.5065 45 1 6.0550 -5.2548 -8.3048 46 1 8.0083 -7.3547 -3.4168 47 1 7.8817 -4.8443 -6.3262 48 1 6.9653 -4.8096 -4.7561 49 1 5.6022 0.6574 -3.9649 50 1 3.8983 0.1467 -4.1791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969787591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:10 Heat of formation + Delta-G solvation = -82.790365 kcal Electronic energy + Delta-G solvation = -30459.694491 eV Core-core repulsion = 26295.027740 eV Total energy + Delta-G solvation = -4164.666751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90504 -40.71480 -39.60743 -38.81906 -37.28954 -36.00824 -34.50573 -34.04979 -31.69544 -30.11983 -29.38630 -28.68464 -27.28732 -26.58371 -25.59148 -24.75049 -23.84285 -22.87766 -21.21462 -20.50244 -20.12223 -18.73404 -18.44276 -18.03677 -17.45192 -17.36639 -17.02434 -16.83937 -16.52347 -16.23776 -15.95523 -15.70947 -15.61821 -15.29671 -14.77534 -14.67486 -14.44986 -14.39613 -14.20057 -13.97891 -13.41359 -13.34329 -13.20023 -13.14864 -13.05071 -12.93541 -12.77464 -12.52536 -12.46097 -12.34570 -12.30594 -12.09508 -11.91403 -11.73800 -11.39836 -11.24536 -11.09454 -10.83775 -10.71847 -10.62512 -9.98386 -9.76614 -8.83967 -7.86896 -5.17633 1.44016 1.47339 1.47623 1.52703 1.66024 1.87776 2.26690 2.49750 2.82231 3.21653 3.34278 3.35823 3.50769 3.71250 3.84950 3.89864 3.97237 4.02587 4.13744 4.25316 4.31454 4.44413 4.47415 4.49654 4.50304 4.56033 4.57640 4.69123 4.72983 4.77376 4.80765 4.81734 4.84229 4.88244 4.92967 5.01591 5.06946 5.26356 5.30341 5.37073 5.47276 5.56725 5.62642 5.77589 6.00749 6.01679 6.18978 6.66590 6.97534 7.06862 7.36409 7.66466 8.62542 9.29458 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.002640 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.214986 B =10602.131748 C =11383.819135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.122 3.878 5 N -0.608 5.608 6 C 0.125 3.875 7 C -0.112 4.112 8 H 0.145 0.855 9 C 0.523 3.477 10 O -0.580 6.580 11 N -0.702 5.702 12 C 0.175 3.825 13 H 0.042 0.958 14 C -0.148 4.148 15 C -0.114 4.114 16 C 0.123 3.877 17 N -0.643 5.643 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.281 1.281 26 C 0.162 3.838 27 C -0.133 4.133 28 C 0.515 3.485 29 O -0.572 6.572 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.416 0.584 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.245 0.755 47 H 0.018 0.982 48 H 0.038 0.962 49 H 0.140 0.860 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 20.636 4.124 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.035 4.035 4 C 0.001 3.999 5 N -0.340 5.340 6 C 0.002 3.998 7 C -0.133 4.133 8 H 0.162 0.838 9 C 0.309 3.691 10 O -0.459 6.459 11 N -0.354 5.354 12 C 0.070 3.930 13 H 0.060 0.940 14 C -0.206 4.206 15 C -0.133 4.133 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.799 3.201 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.037 3.963 27 C -0.173 4.173 28 C 0.304 3.696 29 O -0.452 6.452 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.253 0.747 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.056 0.944 49 H 0.158 0.842 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.535 20.305 4.628 22.506 hybrid contribution 0.157 -1.093 0.376 1.167 sum -8.378 19.211 5.004 21.548 Atomic orbital electron populations 1.22847 0.79952 1.03354 1.00616 1.87900 1.21059 1.28335 1.95535 1.23074 0.94293 0.84924 1.01196 1.21662 0.92302 1.00382 0.85582 1.48333 1.65438 1.07731 1.12517 1.21894 1.00559 0.79895 0.97487 1.22207 1.03806 0.92173 0.95136 0.83761 1.20525 0.80926 0.86142 0.81489 1.90735 1.34360 1.49595 1.71252 1.45836 1.42842 1.28489 1.18195 1.20353 0.93742 0.87285 0.91638 0.93972 1.22035 0.96062 1.02667 0.99801 1.23175 0.95906 0.97388 0.96844 1.22845 0.97822 0.87792 0.91716 1.46384 1.48184 1.08485 1.34014 1.19338 1.19150 0.87317 1.10227 0.90355 1.25521 0.99438 1.01856 0.99190 1.69973 1.30412 1.35935 1.23584 0.85275 0.77191 0.80295 0.77352 1.20297 1.22052 1.20724 1.22218 0.92077 0.84196 0.97833 1.22353 1.06214 0.91699 0.97072 1.21165 0.75826 0.87844 0.84737 1.90702 1.56424 1.15059 1.83019 0.89404 0.92374 0.94200 0.89826 0.94410 0.87676 0.87562 0.91026 0.88766 0.74662 0.89618 0.91687 0.93828 0.86760 0.92468 0.92802 0.94563 0.96403 0.94359 0.84181 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -8.57 10.53 -148.98 -1.57 -10.13 16 3 C 0.04 0.71 6.28 71.98 0.45 1.16 16 4 C 0.12 1.96 6.32 86.38 0.55 2.50 16 5 N -0.61 -12.08 2.88 -817.97 -2.36 -14.44 16 6 C 0.12 2.64 6.54 86.83 0.57 3.21 16 7 C -0.11 -2.09 3.54 -10.48 -0.04 -2.13 16 8 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 9 C 0.52 14.43 7.04 87.66 0.62 15.05 16 10 O -0.58 -22.21 15.23 -3.04 -0.05 -22.25 16 11 N -0.70 -17.46 5.03 -442.53 -2.22 -19.68 16 12 C 0.17 5.57 2.36 44.99 0.11 5.68 16 13 H 0.04 1.90 7.42 -2.38 -0.02 1.88 16 14 C -0.15 -3.86 9.28 71.98 0.67 -3.19 16 15 C -0.11 -3.62 3.56 -10.14 -0.04 -3.65 16 16 C 0.12 4.55 8.30 86.48 0.72 5.27 16 17 N -0.64 -32.39 3.56 -716.78 -2.55 -34.94 16 18 C -0.23 -13.18 10.70 84.03 0.90 -12.28 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 21 N -0.95 -57.95 11.38 21.65 0.25 -57.70 16 22 Si 0.97 47.03 29.55 68.60 2.03 49.05 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.16 7.29 7.04 86.48 0.61 7.90 16 27 C -0.13 -2.12 6.37 30.59 0.19 -1.93 16 28 C 0.52 11.30 8.02 87.90 0.71 12.01 16 29 O -0.57 -16.31 17.60 -3.04 -0.05 -16.37 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.54 7.93 -2.39 -0.02 1.52 16 37 H 0.07 1.95 7.06 -2.38 -0.02 1.94 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.42 7.02 8.60 -92.71 -0.80 6.22 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.75 6.49 -2.39 -0.02 1.73 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.06 2.00 6.44 -2.39 -0.02 1.98 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.04 1.99 7.11 -2.39 -0.02 1.97 16 49 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.11 1.78 7.89 -2.39 -0.02 1.76 16 Total: -1.00 -82.22 408.01 1.34 -80.89 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.14 Total: 17.72 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 7.73 Total: 27.86 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -6.89 Total: -126.76 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.67 Total: -48.75 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -82.22 1.34 -80.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.905 kcal (2) G-P(sol) polarization free energy of solvation -82.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds