Wall clock time and date at job start Tue Mar 31 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99837 * 2 1 4 4 C 1.53009 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46618 * 64.99964 * 4 3 2 6 6 C 1.46768 * 124.34403 * 90.00196 * 5 4 3 7 7 C 1.54487 * 105.46844 * 162.98012 * 6 5 4 8 8 H 1.08998 * 110.96817 * 267.29490 * 7 6 5 9 9 C 1.50698 * 110.96601 * 143.57145 * 7 6 5 10 10 O 1.21276 * 120.00251 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99934 * 180.02562 * 9 7 6 12 12 C 1.46503 * 120.00201 * 180.02562 * 11 9 7 13 13 H 1.09004 * 109.47195 * 34.99389 * 12 11 9 14 14 C 1.52995 * 109.46805 * 274.99264 * 12 11 9 15 15 C 1.52999 * 109.47109 * 154.99209 * 12 11 9 16 16 C 1.53939 * 113.74722 * 276.67493 * 15 12 11 17 17 N 1.47579 * 86.11749 * 222.04931 * 16 15 12 18 18 C 1.36940 * 134.49168 * 204.63360 * 17 16 15 19 19 H 1.07999 * 120.00230 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99874 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47142 * 59.99707 * 22 20 18 24 24 H 1.48504 * 109.46830 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47152 * 299.99662 * 22 20 18 26 26 C 1.47573 * 91.01636 * 24.64040 * 17 16 15 27 27 C 1.54631 * 101.76542 * 25.41471 * 7 6 5 28 28 C 1.34409 * 124.35202 * 269.99533 * 5 4 3 29 29 O 1.21280 * 124.94381 * 0.44780 * 28 5 4 30 30 H 1.09000 * 109.46625 * 60.00276 * 1 2 3 31 31 H 1.08995 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47464 * 299.99892 * 1 2 3 33 33 H 1.09000 * 109.47307 * 60.00083 * 3 2 1 34 34 H 1.08994 * 109.47081 * 299.99555 * 3 2 1 35 35 H 1.08994 * 109.47290 * 305.00126 * 4 3 2 36 36 H 1.08998 * 109.46995 * 184.99721 * 4 3 2 37 37 H 1.09000 * 110.25007 * 43.98013 * 6 5 4 38 38 H 1.09004 * 110.24485 * 281.97719 * 6 5 4 39 39 H 0.97009 * 120.00067 * 359.97438 * 11 9 7 40 40 H 1.09004 * 109.47346 * 300.00033 * 14 12 11 41 41 H 1.09006 * 109.46932 * 60.00135 * 14 12 11 42 42 H 1.09004 * 109.46999 * 179.97438 * 14 12 11 43 43 H 1.09000 * 112.94249 * 48.41192 * 15 12 11 44 44 H 1.09007 * 113.76481 * 336.34613 * 16 15 12 45 45 H 1.08997 * 113.77503 * 107.74513 * 16 15 12 46 46 H 0.96998 * 119.99862 * 180.02562 * 21 20 18 47 47 H 1.09004 * 113.77136 * 221.06165 * 26 17 16 48 48 H 1.08998 * 113.87661 * 89.67117 * 26 17 16 49 49 H 1.09003 * 110.48562 * 93.87872 * 27 7 6 50 50 H 1.08997 * 110.48064 * 216.39097 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.3129 1.3079 -2.4706 7 6 5.1180 0.3219 -3.3459 8 1 6.1882 0.4266 -3.1678 9 6 4.7960 0.5102 -4.8059 10 8 3.9939 1.3539 -5.1461 11 7 5.3986 -0.2596 -5.7337 12 6 5.0861 -0.0762 -7.1532 13 1 4.9055 0.9803 -7.3519 14 6 3.8356 -0.8830 -7.5083 15 6 6.2636 -0.5606 -8.0014 16 6 7.3808 0.4856 -8.1661 17 7 7.4361 0.0573 -9.5773 18 6 8.3981 0.0847 -10.5515 19 1 8.1813 -0.3037 -11.5356 20 6 9.6524 0.6106 -10.2738 21 7 9.9168 1.0835 -9.0743 22 14 10.9649 0.6472 -11.6025 23 1 10.4834 1.4551 -12.7517 24 1 12.2053 1.2542 -11.0563 25 1 11.2491 -0.7380 -12.0558 26 6 6.0383 -0.4120 -9.5170 27 6 4.6033 -1.0444 -2.8366 28 6 4.1255 -0.7598 -1.4297 29 8 3.9077 -1.6035 -0.5861 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5686 0.8426 36 1 3.9784 2.1766 0.0902 37 1 4.9214 2.1785 -2.2258 38 1 3.4038 1.6155 -2.9875 39 1 6.0399 -0.9347 -5.4615 40 1 4.0162 -1.9395 -7.3096 41 1 2.9967 -0.5378 -6.9040 42 1 3.6028 -0.7462 -8.5644 43 1 6.6232 -1.5462 -7.7058 44 1 7.0434 1.5134 -8.0318 45 1 8.2845 0.2560 -7.6016 46 1 10.7932 1.4513 -8.8804 47 1 5.8700 -1.3584 -10.0310 48 1 5.3051 0.3507 -9.7794 49 1 3.7782 -1.3962 -3.4559 50 1 5.4108 -1.7765 -2.8266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969787592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:13 Heat of formation + Delta-G solvation = -57.596061 kcal Electronic energy + Delta-G solvation = -29926.140651 eV Core-core repulsion = 25762.566408 eV Total energy + Delta-G solvation = -4163.574244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98987 -39.54869 -38.18528 -37.98915 -36.32416 -34.85855 -33.67139 -32.20523 -30.62702 -29.32382 -27.89497 -27.53729 -26.60429 -25.05931 -24.30092 -23.65879 -22.83634 -21.19797 -20.26617 -19.62901 -19.02705 -17.63015 -17.13037 -16.89794 -16.75188 -16.14529 -16.10491 -15.73383 -15.34394 -15.03905 -14.91893 -14.72194 -14.00660 -13.88661 -13.71603 -13.62206 -13.46116 -13.39828 -13.04374 -12.89535 -12.46668 -12.30379 -12.16393 -12.05511 -11.77565 -11.69460 -11.53885 -11.47577 -11.33038 -11.31743 -10.92098 -10.75340 -10.39746 -10.17374 -10.00525 -9.92004 -9.79062 -9.65896 -9.42299 -8.92816 -8.87074 -8.81009 -6.89354 -5.78438 -3.10593 2.46926 2.56662 2.69252 3.19775 3.38386 3.42542 3.43625 3.47864 4.03141 4.14459 4.43688 4.54964 4.65442 4.69085 4.75357 4.90233 4.96286 5.01134 5.05704 5.08296 5.11253 5.22984 5.24962 5.25949 5.33148 5.39260 5.44843 5.50948 5.51689 5.62516 5.68327 5.77226 5.91732 5.99873 6.20392 6.26273 6.32896 6.38028 6.54891 6.62491 6.76231 6.84007 6.92655 7.20853 7.34005 7.53878 7.57218 7.96973 8.04344 8.23575 9.03404 9.69425 10.58548 11.38577 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.002043 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.546422 B =13701.216705 C =14158.750921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.039 3.961 4 C 0.130 3.870 5 N -0.619 5.619 6 C 0.117 3.883 7 C -0.125 4.125 8 H 0.119 0.881 9 C 0.526 3.474 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.150 3.850 13 H 0.088 0.912 14 C -0.159 4.159 15 C -0.147 4.147 16 C 0.171 3.829 17 N -0.612 5.612 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.130 3.870 27 C -0.144 4.144 28 C 0.525 3.475 29 O -0.518 6.518 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.401 0.599 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.254 0.746 47 H 0.044 0.956 48 H 0.035 0.965 49 H 0.107 0.893 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 -0.637 18.371 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.039 4.039 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.006 4.006 7 C -0.147 4.147 8 H 0.137 0.863 9 C 0.311 3.689 10 O -0.417 6.417 11 N -0.362 5.362 12 C 0.046 3.954 13 H 0.106 0.894 14 C -0.217 4.217 15 C -0.167 4.167 16 C 0.045 3.955 17 N -0.338 5.338 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.003 3.997 27 C -0.184 4.184 28 C 0.313 3.687 29 O -0.392 6.392 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.236 0.764 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.126 0.874 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.545 -0.545 18.488 24.161 hybrid contribution 0.826 0.252 -0.723 1.126 sum -14.720 -0.293 17.766 23.073 Atomic orbital electron populations 1.22729 0.81343 1.02771 0.99649 1.88057 1.19300 1.26806 1.95291 1.23031 0.94506 0.85742 1.00592 1.21411 0.92188 0.99294 0.86336 1.48186 1.67374 1.07361 1.12458 1.21985 1.00548 0.94084 0.83979 1.22252 1.02932 0.96425 0.93106 0.86263 1.19969 0.80895 0.81108 0.86943 1.90701 1.34589 1.34514 1.81890 1.46076 1.44712 1.38316 1.07053 1.21127 0.94730 1.01009 0.78583 0.89382 1.22135 0.97509 1.00036 1.02016 1.23829 0.95931 1.01316 0.95598 1.22262 0.94394 0.92858 0.85943 1.45941 1.06913 1.70975 1.10017 1.18980 0.90142 1.34509 0.91459 0.90329 1.24782 0.97635 1.00980 0.97096 1.69800 1.21828 1.45781 1.19506 0.86201 0.81104 0.77705 0.80754 1.21205 1.21568 1.21079 1.22496 0.88490 0.96968 0.91744 1.22331 1.03814 0.97128 0.95150 1.20623 0.76622 0.82177 0.89311 1.90735 1.50882 1.49065 1.48563 0.94243 0.89691 0.94269 0.92366 0.92899 0.89075 0.88614 0.89735 0.89157 0.76445 0.92660 0.92828 0.91385 0.89340 0.95700 0.91027 0.93622 0.93775 0.94780 0.87444 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.17 10.22 -35.23 -0.36 -4.53 16 3 C 0.04 0.31 6.28 37.16 0.23 0.54 16 4 C 0.13 1.01 6.33 -4.04 -0.03 0.98 16 5 N -0.62 -5.91 2.90 -172.40 -0.50 -6.41 16 6 C 0.12 1.01 6.71 -3.12 -0.02 0.99 16 7 C -0.13 -1.09 3.54 -90.14 -0.32 -1.41 16 8 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 9 C 0.53 6.25 7.03 -10.99 -0.08 6.17 16 10 O -0.54 -8.28 15.17 5.56 0.08 -8.20 16 11 N -0.71 -8.30 5.08 -53.81 -0.27 -8.57 16 12 C 0.15 2.11 2.42 -67.93 -0.16 1.95 16 13 H 0.09 1.46 7.37 -51.93 -0.38 1.07 16 14 C -0.16 -1.96 9.29 37.15 0.35 -1.61 16 15 C -0.15 -2.47 3.50 -89.70 -0.31 -2.78 16 16 C 0.17 3.83 7.07 -2.98 -0.02 3.80 16 17 N -0.61 -15.36 3.70 -177.93 -0.66 -16.02 16 18 C -0.22 -6.20 10.70 -15.06 -0.16 -6.37 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -26.97 11.38 55.49 0.63 -26.34 16 22 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.13 2.51 7.56 -2.98 -0.02 2.49 16 27 C -0.14 -1.28 6.41 -26.74 -0.17 -1.45 16 28 C 0.53 6.18 7.72 -10.87 -0.08 6.09 16 29 O -0.52 -8.08 17.45 5.56 0.10 -7.98 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.92 6.96 -51.93 -0.36 0.55 16 39 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 43 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.03 0.59 7.96 -51.92 -0.41 0.18 16 45 H 0.07 1.77 7.15 -51.93 -0.37 1.40 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 49 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -36.17 409.18 -8.17 -44.34 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.55 Total: 0.18 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 0.21 Total: 10.44 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.80 Total: -57.34 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.18 Total: -20.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.17 -8.17 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.258 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds