Wall clock time and date at job start Tue Mar 31 2020 22:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99837 * 2 1 4 4 C 1.53009 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46618 * 64.99964 * 4 3 2 6 6 C 1.46768 * 124.34403 * 90.00196 * 5 4 3 7 7 C 1.54487 * 105.46844 * 162.98012 * 6 5 4 8 8 H 1.08998 * 110.96817 * 267.29490 * 7 6 5 9 9 C 1.50698 * 110.96601 * 143.57145 * 7 6 5 10 10 O 1.21276 * 120.00251 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99934 * 180.02562 * 9 7 6 12 12 C 1.46503 * 120.00201 * 180.02562 * 11 9 7 13 13 H 1.09004 * 109.47195 * 34.99389 * 12 11 9 14 14 C 1.52995 * 109.46805 * 274.99264 * 12 11 9 15 15 C 1.52999 * 109.47109 * 154.99209 * 12 11 9 16 16 C 1.53939 * 113.74722 * 276.67493 * 15 12 11 17 17 N 1.47579 * 86.11749 * 222.04931 * 16 15 12 18 18 C 1.36940 * 134.49168 * 204.63360 * 17 16 15 19 19 H 1.07999 * 120.00230 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99874 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47142 * 59.99707 * 22 20 18 24 24 H 1.48504 * 109.46830 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47152 * 299.99662 * 22 20 18 26 26 C 1.47573 * 91.01636 * 24.64040 * 17 16 15 27 27 C 1.54631 * 101.76542 * 25.41471 * 7 6 5 28 28 C 1.34409 * 124.35202 * 269.99533 * 5 4 3 29 29 O 1.21280 * 124.94381 * 0.44780 * 28 5 4 30 30 H 1.09000 * 109.46625 * 60.00276 * 1 2 3 31 31 H 1.08995 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47464 * 299.99892 * 1 2 3 33 33 H 1.09000 * 109.47307 * 60.00083 * 3 2 1 34 34 H 1.08994 * 109.47081 * 299.99555 * 3 2 1 35 35 H 1.08994 * 109.47290 * 305.00126 * 4 3 2 36 36 H 1.08998 * 109.46995 * 184.99721 * 4 3 2 37 37 H 1.09000 * 110.25007 * 43.98013 * 6 5 4 38 38 H 1.09004 * 110.24485 * 281.97719 * 6 5 4 39 39 H 0.97009 * 120.00067 * 359.97438 * 11 9 7 40 40 H 1.09004 * 109.47346 * 300.00033 * 14 12 11 41 41 H 1.09006 * 109.46932 * 60.00135 * 14 12 11 42 42 H 1.09004 * 109.46999 * 179.97438 * 14 12 11 43 43 H 1.09000 * 112.94249 * 48.41192 * 15 12 11 44 44 H 1.09007 * 113.76481 * 336.34613 * 16 15 12 45 45 H 1.08997 * 113.77503 * 107.74513 * 16 15 12 46 46 H 0.96998 * 119.99862 * 180.02562 * 21 20 18 47 47 H 1.09004 * 113.77136 * 221.06165 * 26 17 16 48 48 H 1.08998 * 113.87661 * 89.67117 * 26 17 16 49 49 H 1.09003 * 110.48562 * 93.87872 * 27 7 6 50 50 H 1.08997 * 110.48064 * 216.39097 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.3129 1.3079 -2.4706 7 6 5.1180 0.3219 -3.3459 8 1 6.1882 0.4266 -3.1678 9 6 4.7960 0.5102 -4.8059 10 8 3.9939 1.3539 -5.1461 11 7 5.3986 -0.2596 -5.7337 12 6 5.0861 -0.0762 -7.1532 13 1 4.9055 0.9803 -7.3519 14 6 3.8356 -0.8830 -7.5083 15 6 6.2636 -0.5606 -8.0014 16 6 7.3808 0.4856 -8.1661 17 7 7.4361 0.0573 -9.5773 18 6 8.3981 0.0847 -10.5515 19 1 8.1813 -0.3037 -11.5356 20 6 9.6524 0.6106 -10.2738 21 7 9.9168 1.0835 -9.0743 22 14 10.9649 0.6472 -11.6025 23 1 10.4834 1.4551 -12.7517 24 1 12.2053 1.2542 -11.0563 25 1 11.2491 -0.7380 -12.0558 26 6 6.0383 -0.4120 -9.5170 27 6 4.6033 -1.0444 -2.8366 28 6 4.1255 -0.7598 -1.4297 29 8 3.9077 -1.6035 -0.5861 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5686 0.8426 36 1 3.9784 2.1766 0.0902 37 1 4.9214 2.1785 -2.2258 38 1 3.4038 1.6155 -2.9875 39 1 6.0399 -0.9347 -5.4615 40 1 4.0162 -1.9395 -7.3096 41 1 2.9967 -0.5378 -6.9040 42 1 3.6028 -0.7462 -8.5644 43 1 6.6232 -1.5462 -7.7058 44 1 7.0434 1.5134 -8.0318 45 1 8.2845 0.2560 -7.6016 46 1 10.7932 1.4513 -8.8804 47 1 5.8700 -1.3584 -10.0310 48 1 5.3051 0.3507 -9.7794 49 1 3.7782 -1.3962 -3.4559 50 1 5.4108 -1.7765 -2.8266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969787592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:12 Heat of formation + Delta-G solvation = -83.937722 kcal Electronic energy + Delta-G solvation = -29927.282911 eV Core-core repulsion = 25762.566408 eV Total energy + Delta-G solvation = -4164.716504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84902 -40.64765 -39.58783 -38.74697 -37.25951 -36.12036 -34.46937 -34.05652 -31.79048 -30.10400 -29.30790 -28.66106 -27.24294 -26.61046 -25.69284 -24.81201 -23.65077 -22.55170 -21.32380 -20.56035 -20.28410 -18.74939 -18.52533 -17.91439 -17.56769 -17.23251 -16.96560 -16.84139 -16.55353 -16.12583 -15.90344 -15.71784 -15.60465 -15.17371 -14.78057 -14.58521 -14.50400 -14.35417 -14.13721 -13.81559 -13.61595 -13.35774 -13.21159 -13.04392 -12.95656 -12.86098 -12.72870 -12.67225 -12.57386 -12.39060 -12.30734 -12.10468 -11.99065 -11.71017 -11.45167 -11.21696 -11.05104 -10.84317 -10.67639 -10.59326 -9.97936 -9.69857 -8.89101 -7.88898 -5.21793 1.46336 1.49343 1.55347 1.58852 1.64661 1.92881 2.27598 2.48979 2.89462 3.24819 3.32143 3.39412 3.43260 3.73515 3.84734 3.95186 4.00861 4.08019 4.14996 4.25715 4.35568 4.37745 4.46075 4.47046 4.53159 4.54507 4.58254 4.64365 4.67598 4.78182 4.79140 4.81254 4.87199 4.87734 4.91203 4.98497 5.05463 5.15409 5.29155 5.38477 5.53506 5.55935 5.61003 5.72218 5.97414 6.11147 6.26230 6.62937 6.94769 7.19712 7.29968 7.63156 8.59199 9.27615 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.002043 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.546422 B =13701.216705 C =14158.750921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.036 3.964 4 C 0.123 3.877 5 N -0.614 5.614 6 C 0.118 3.882 7 C -0.113 4.113 8 H 0.144 0.856 9 C 0.528 3.472 10 O -0.575 6.575 11 N -0.707 5.707 12 C 0.161 3.839 13 H 0.062 0.938 14 C -0.151 4.151 15 C -0.108 4.108 16 C 0.168 3.832 17 N -0.646 5.646 18 C -0.235 4.235 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.128 3.872 27 C -0.136 4.136 28 C 0.516 3.484 29 O -0.564 6.564 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.005 0.995 45 H 0.043 0.957 46 H 0.248 0.752 47 H 0.062 0.938 48 H 0.043 0.957 49 H 0.106 0.894 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 -1.056 18.448 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.041 4.041 4 C 0.001 3.999 5 N -0.347 5.347 6 C -0.004 4.004 7 C -0.135 4.135 8 H 0.162 0.838 9 C 0.314 3.686 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.055 3.945 13 H 0.081 0.919 14 C -0.209 4.209 15 C -0.128 4.128 16 C 0.043 3.957 17 N -0.372 5.372 18 C -0.364 4.364 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.805 3.195 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.003 3.997 27 C -0.176 4.176 28 C 0.304 3.696 29 O -0.443 6.443 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.023 0.977 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.124 0.876 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.960 -0.964 18.558 24.496 hybrid contribution 0.865 0.437 -0.753 1.227 sum -15.095 -0.526 17.805 23.349 Atomic orbital electron populations 1.22831 0.80175 1.03100 1.00665 1.88015 1.20854 1.28753 1.95537 1.23173 0.94374 0.84861 1.01710 1.21666 0.92472 1.00615 0.85110 1.48315 1.66288 1.06944 1.13191 1.22025 1.00314 0.94647 0.83448 1.22208 1.04328 0.96357 0.90568 0.83797 1.20410 0.79989 0.80156 0.88034 1.90695 1.36148 1.35991 1.82640 1.45966 1.45032 1.38665 1.06059 1.20803 0.94293 0.99779 0.79614 0.91948 1.22054 0.96028 1.00652 1.02138 1.23431 0.94541 1.00037 0.94761 1.22162 0.95229 0.93399 0.84941 1.46389 1.08971 1.71348 1.10504 1.19394 0.91095 1.33598 0.92297 0.89963 1.25614 0.99843 1.01465 0.99218 1.69987 1.21856 1.47070 1.21253 0.85172 0.78122 0.77955 0.78206 1.20660 1.22087 1.20025 1.22697 0.85836 0.97611 0.93583 1.22312 1.04383 0.97605 0.93285 1.21080 0.76167 0.82483 0.89841 1.90706 1.53159 1.50346 1.50111 0.93824 0.89831 0.92575 0.90092 0.92781 0.90425 0.85166 0.87420 0.90587 0.74889 0.90783 0.93074 0.91099 0.87685 0.97742 0.93849 0.94310 0.91998 0.93938 0.87568 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.05 10.22 -148.98 -1.52 -10.58 16 3 C 0.04 0.53 6.28 71.99 0.45 0.98 16 4 C 0.12 1.74 6.33 86.38 0.55 2.29 16 5 N -0.61 -10.92 2.90 -817.96 -2.37 -13.29 16 6 C 0.12 1.83 6.71 86.83 0.58 2.41 16 7 C -0.11 -1.72 3.54 -10.48 -0.04 -1.76 16 8 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 9 C 0.53 11.69 7.03 87.66 0.62 12.31 16 10 O -0.58 -17.18 15.17 -3.02 -0.05 -17.23 16 11 N -0.71 -15.12 5.08 -442.54 -2.25 -17.37 16 12 C 0.16 4.27 2.42 44.99 0.11 4.38 16 13 H 0.06 2.04 7.37 -2.39 -0.02 2.02 16 14 C -0.15 -3.33 9.29 71.98 0.67 -2.67 16 15 C -0.11 -3.47 3.50 -10.14 -0.04 -3.51 16 16 C 0.17 7.61 7.07 86.48 0.61 8.23 16 17 N -0.65 -32.34 3.70 -716.85 -2.65 -34.99 16 18 C -0.24 -13.09 10.70 84.03 0.90 -12.19 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.95 -56.83 11.38 21.65 0.25 -56.58 16 22 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.13 4.76 7.56 86.48 0.65 5.42 16 27 C -0.14 -2.16 6.41 30.59 0.20 -1.97 16 28 C 0.52 11.73 7.72 87.90 0.68 12.41 16 29 O -0.56 -17.76 17.45 -3.03 -0.05 -17.82 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.34 7.93 -2.39 -0.02 1.32 16 36 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.45 6.96 -2.38 -0.02 1.44 16 39 H 0.41 6.82 8.60 -92.70 -0.80 6.02 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.07 1.54 7.43 -2.39 -0.02 1.52 16 43 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.00 0.23 7.96 -2.38 -0.02 0.21 16 45 H 0.04 2.19 7.15 -2.39 -0.02 2.18 16 46 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 48 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 49 H 0.11 1.76 7.89 -2.39 -0.02 1.75 16 50 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -80.78 409.18 1.17 -79.61 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.13 Total: 16.26 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 7.66 Total: 24.61 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -7.02 Total: -122.23 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.62 Total: -45.62 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -80.78 1.17 -79.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.327 kcal (2) G-P(sol) polarization free energy of solvation -80.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds