Wall clock time and date at job start Tue Mar 31 2020 22:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 114.00022 * 2 1 4 4 H 1.09000 * 110.88812 * 32.42556 * 3 2 1 5 5 C 1.55162 * 111.03393 * 156.33050 * 3 2 1 6 6 C 1.54317 * 102.94143 * 153.58584 * 5 3 2 7 7 H 1.08995 * 109.88670 * 218.23144 * 6 5 3 8 8 C 1.50705 * 109.88179 * 97.22135 * 6 5 3 9 9 O 1.21284 * 120.00426 * 260.00240 * 8 6 5 10 10 N 1.34776 * 119.99652 * 80.00175 * 8 6 5 11 11 C 1.46502 * 120.00041 * 180.02562 * 10 8 6 12 12 H 1.09007 * 109.46738 * 324.99787 * 11 10 8 13 13 C 1.52999 * 109.47538 * 84.99644 * 11 10 8 14 14 C 1.52995 * 109.47036 * 205.00013 * 11 10 8 15 15 C 1.53948 * 113.74238 * 161.67764 * 14 11 10 16 16 N 1.47584 * 86.11660 * 222.04699 * 15 14 11 17 17 C 1.36935 * 134.48925 * 204.64038 * 16 15 14 18 18 H 1.08006 * 119.99723 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00482 * 359.97438 * 17 16 15 20 20 N 1.31623 * 119.99676 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00370 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47140 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47554 * 119.99791 * 21 19 17 24 24 H 1.48504 * 109.47001 * 240.00116 * 21 19 17 25 25 C 1.47574 * 91.01848 * 24.63828 * 16 15 14 26 26 N 1.47291 * 107.30687 * 337.81922 * 6 5 3 27 27 C 1.34777 * 125.79166 * 178.92144 * 26 6 5 28 28 C 1.50709 * 119.99609 * 180.02562 * 27 26 6 29 29 O 1.21276 * 120.00228 * 0.02562 * 27 26 6 30 30 C 1.47421 * 108.55925 * 358.92026 * 26 6 5 31 31 H 1.09000 * 109.46597 * 59.99882 * 1 2 3 32 32 H 1.08994 * 109.47107 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47041 * 300.00429 * 1 2 3 34 34 H 1.08994 * 110.71849 * 271.94995 * 5 3 2 35 35 H 1.08998 * 110.71930 * 35.04608 * 5 3 2 36 36 H 0.97004 * 120.00436 * 359.97438 * 10 8 6 37 37 H 1.09005 * 109.46784 * 60.02213 * 13 11 10 38 38 H 1.08994 * 109.46999 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.47041 * 300.02860 * 13 11 10 40 40 H 1.08995 * 112.94770 * 293.40629 * 14 11 10 41 41 H 1.08996 * 113.76828 * 336.34632 * 15 14 11 42 42 H 1.09001 * 113.77302 * 107.74662 * 15 14 11 43 43 H 0.96998 * 120.00086 * 180.02562 * 20 19 17 44 44 H 1.08997 * 113.77252 * 221.06210 * 25 16 15 45 45 H 1.09004 * 113.77159 * 89.65748 * 25 16 15 46 46 H 1.08996 * 109.47113 * 90.00683 * 28 27 26 47 47 H 1.09001 * 109.46356 * 209.99857 * 28 27 26 48 48 H 1.08997 * 109.46956 * 329.99822 * 28 27 26 49 49 H 1.08998 * 110.37224 * 265.26518 * 30 26 6 50 50 H 1.09005 * 110.36573 * 143.04691 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3831 2.0101 0.5460 5 6 3.4486 1.2747 0.5814 6 6 4.1211 2.4873 -0.0959 7 1 5.1538 2.2458 -0.3476 8 6 4.0839 3.6767 0.8287 9 8 3.2438 4.5379 0.6755 10 7 4.9843 3.7834 1.8259 11 6 4.9478 4.9394 2.7251 12 1 4.6416 5.8243 2.1671 13 6 3.9482 4.6768 3.8533 14 6 6.3391 5.1674 3.3193 15 6 6.5384 6.5757 3.9084 16 7 7.8708 6.5430 3.2746 17 6 9.0637 7.1708 3.5154 18 1 9.9175 6.9678 2.8859 19 6 9.1756 8.0682 4.5686 20 7 8.1349 8.3160 5.3354 21 14 10.8027 8.9251 4.8967 22 1 11.8079 8.4775 3.8994 23 1 10.6187 10.3947 4.7893 24 1 11.2753 8.5839 6.2625 25 6 7.4013 5.5620 2.2771 26 7 3.3597 2.7825 -1.3217 27 6 3.6151 3.7846 -2.1861 28 6 2.7473 3.9680 -3.4046 29 8 4.5431 4.5385 -1.9835 30 6 2.2698 1.7977 -1.4457 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.4296 1.3993 1.6640 35 1 3.9545 0.3482 0.3100 36 1 5.6560 3.0945 1.9487 37 1 4.2547 3.7921 4.4115 38 1 3.9208 5.5370 4.5220 39 1 2.9571 4.5139 3.4299 40 1 6.6543 4.3632 3.9842 41 1 5.8700 7.3266 3.4873 42 1 6.5705 6.5958 4.9977 43 1 8.2130 8.9433 6.0711 44 1 8.1222 4.7727 2.0640 45 1 6.9862 6.0151 1.3768 46 1 1.9176 4.6323 -3.1631 47 1 3.3391 4.4037 -4.2097 48 1 2.3580 3.0008 -3.7223 49 1 2.5795 0.9667 -2.0795 50 1 1.3755 2.2706 -1.8516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970217278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:04 Heat of formation + Delta-G solvation = -50.879973 kcal Electronic energy + Delta-G solvation = -30736.901032 eV Core-core repulsion = 26573.618020 eV Total energy + Delta-G solvation = -4163.283012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98256 -39.20483 -38.60119 -37.89048 -36.35937 -34.71293 -32.44102 -31.97019 -30.67207 -29.74802 -28.77435 -27.43072 -26.96505 -24.87327 -24.29011 -23.73044 -22.26329 -21.37423 -20.38066 -19.69129 -18.89606 -17.79036 -17.44564 -16.73125 -16.67891 -16.14611 -15.75258 -15.44060 -15.18536 -15.02245 -14.83543 -14.66477 -14.01741 -13.96843 -13.70530 -13.48466 -13.30554 -13.18274 -13.09337 -12.94854 -12.55931 -12.26159 -12.22445 -12.13540 -12.04443 -11.73114 -11.54985 -11.35302 -11.25551 -11.16299 -10.85374 -10.62441 -10.31157 -10.28769 -10.05139 -9.93424 -9.76013 -9.68686 -9.36846 -8.87544 -8.77509 -8.73039 -6.81369 -5.71840 -3.03414 2.33977 2.57214 2.78561 3.20744 3.39977 3.42356 3.47516 3.50138 3.93168 4.07768 4.50007 4.52487 4.56149 4.68564 4.73882 4.84224 4.91764 4.94699 5.00088 5.13139 5.15842 5.18398 5.23746 5.25149 5.31147 5.38708 5.45141 5.47306 5.55457 5.59618 5.69825 5.85753 5.86216 6.04970 6.11205 6.33919 6.42137 6.50193 6.63423 6.65849 6.71881 6.87243 7.21335 7.28142 7.42870 7.61235 7.67961 8.01798 8.03816 8.38014 9.10417 9.76151 10.66296 11.45641 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.002473 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.866282 B =11318.130545 C =12182.200038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.115 4.115 6 C 0.119 3.881 7 H 0.103 0.897 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.715 5.715 11 C 0.152 3.848 12 H 0.086 0.914 13 C -0.156 4.156 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.613 5.613 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.125 3.875 26 N -0.602 5.602 27 C 0.532 3.468 28 C -0.166 4.166 29 O -0.525 6.525 30 C 0.083 3.917 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.398 0.602 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.040 0.960 45 H 0.034 0.966 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.918 -20.548 -12.926 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.153 4.153 6 C 0.011 3.989 7 H 0.121 0.879 8 C 0.293 3.707 9 O -0.405 6.405 10 N -0.366 5.366 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.214 4.214 14 C -0.167 4.167 15 C 0.050 3.950 16 N -0.339 5.339 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.001 4.001 26 N -0.339 5.339 27 C 0.321 3.679 28 C -0.226 4.226 29 O -0.400 6.400 30 C -0.041 4.041 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.231 0.769 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.663 -19.360 -12.843 29.184 hybrid contribution 0.895 0.516 0.198 1.052 sum -16.768 -18.845 -12.645 28.217 Atomic orbital electron populations 1.22863 0.80448 1.03103 1.00428 1.87916 1.20191 1.26168 1.94782 1.23249 0.94963 0.85335 0.94774 0.89696 1.22658 0.94238 0.97166 1.01278 1.21558 0.98420 0.93351 0.85570 0.87905 1.20574 0.81668 0.87398 0.81031 1.90678 1.37220 1.41155 1.71493 1.46069 1.33369 1.25754 1.31408 1.21098 0.96064 0.88270 0.89824 0.89600 1.22097 0.98662 1.02264 0.98409 1.23846 0.91941 1.01329 0.99546 1.22179 0.85360 0.88433 0.99001 1.45965 1.06867 1.49600 1.31429 1.19084 0.86600 1.18400 1.10631 0.90273 1.24784 0.97662 0.99846 0.98372 1.69824 1.28474 1.38500 1.20186 0.86047 0.82784 0.79269 0.77686 1.20496 1.21778 1.21740 1.22543 0.93051 0.91933 0.92527 1.48171 1.31833 1.30937 1.22987 1.20489 0.85205 0.78447 0.83710 1.21869 1.00968 1.03897 0.95825 1.90795 1.31146 1.42568 1.75451 1.22758 0.90678 0.92300 0.98368 0.93751 0.89245 0.93607 0.88716 0.88088 0.76871 0.92753 0.91122 0.93060 0.89340 0.95552 0.90725 0.93743 0.94177 0.94834 0.88683 0.88712 0.90347 0.89969 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.89 101.05 1.10 1.23 16 2 O -0.37 -2.70 10.52 -35.23 -0.37 -3.07 16 3 C 0.08 0.57 3.49 -24.58 -0.09 0.48 16 4 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 5 C -0.12 -0.87 6.22 -24.90 -0.15 -1.03 16 6 C 0.12 1.27 3.31 -67.96 -0.22 1.05 16 7 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 8 C 0.51 7.35 6.18 -10.98 -0.07 7.29 16 9 O -0.53 -9.72 15.59 5.55 0.09 -9.64 16 10 N -0.72 -9.71 4.94 -53.80 -0.27 -9.98 16 11 C 0.15 2.47 2.29 -67.93 -0.16 2.31 16 12 H 0.09 1.68 7.48 -51.92 -0.39 1.29 16 13 C -0.16 -2.22 9.44 37.16 0.35 -1.87 16 14 C -0.15 -2.74 3.36 -89.69 -0.30 -3.04 16 15 C 0.18 4.24 6.98 -2.97 -0.02 4.22 16 16 N -0.61 -16.38 3.70 -177.89 -0.66 -17.03 16 17 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 18 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.92 -28.01 11.38 55.49 0.63 -27.38 16 21 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.13 2.71 8.37 -2.97 -0.02 2.68 16 26 N -0.60 -6.51 2.80 -164.12 -0.46 -6.97 16 27 C 0.53 6.95 7.30 -10.98 -0.08 6.87 16 28 C -0.17 -1.35 9.67 36.01 0.35 -1.00 16 29 O -0.53 -9.61 16.73 5.56 0.09 -9.52 16 30 C 0.08 0.59 5.99 -2.53 -0.02 0.58 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.21 8.11 -51.93 -0.42 -0.21 16 34 H 0.09 0.69 7.82 -51.93 -0.41 0.29 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 42 H 0.07 1.95 7.16 -51.93 -0.37 1.58 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.41 7.18 -51.93 -0.37 0.03 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.46 7.54 -51.93 -0.39 0.07 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -38.40 407.92 -7.97 -46.38 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.57 Total: 0.50 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 0.41 Total: 12.82 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.75 Total: -61.36 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.19 Total: -22.23 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.40 -7.97 -46.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970217278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.502 kcal (2) G-P(sol) polarization free energy of solvation -38.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds