Wall clock time and date at job start Tue Mar 31 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.51029 * 2 1 4 4 C 1.53109 * 109.50647 * 239.91348 * 2 1 3 5 5 N 1.47005 * 109.25697 * 183.17553 * 4 2 1 6 6 C 1.46903 * 110.99846 * 182.39109 * 5 4 2 7 7 C 1.47017 * 110.75657 * 58.61715 * 5 4 2 8 8 C 1.53103 * 109.25580 * 301.38142 * 7 5 4 9 9 H 1.08994 * 109.50461 * 296.87305 * 8 7 5 10 10 C 1.50691 * 109.50390 * 176.78276 * 8 7 5 11 11 O 1.21285 * 119.99978 * 244.99646 * 10 8 7 12 12 N 1.34778 * 120.00492 * 65.00653 * 10 8 7 13 13 C 1.48046 * 121.01962 * 357.84581 * 12 10 8 14 14 C 1.53570 * 106.51059 * 130.19339 * 13 12 10 15 15 O 1.42618 * 108.32548 * 57.33844 * 14 13 12 16 16 C 1.42784 * 115.84276 * 295.38139 * 15 14 13 17 17 H 1.08999 * 111.86172 * 290.15526 * 16 15 14 18 18 C 1.54899 * 107.17387 * 166.91725 * 16 15 14 19 19 N 1.48553 * 106.45381 * 266.54775 * 18 16 15 20 20 C 1.36931 * 125.46574 * 180.18281 * 19 18 16 21 21 H 1.08001 * 119.99805 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00397 * 0.02562 * 20 19 18 23 23 N 1.31623 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00334 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46869 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47286 * 119.99298 * 24 22 20 27 27 H 1.48501 * 109.46956 * 239.99656 * 24 22 20 28 28 C 1.47613 * 108.88668 * 0.18362 * 19 18 16 29 29 C 1.45519 * 120.04251 * 180.02562 * 12 10 8 30 30 H 1.09000 * 110.29772 * 345.54313 * 29 12 10 31 31 O 1.43010 * 109.54301 * 120.11046 * 2 1 3 32 32 H 1.08998 * 109.47443 * 180.08391 * 1 2 3 33 33 H 1.08999 * 109.47304 * 300.08931 * 1 2 3 34 34 H 1.09006 * 109.47349 * 60.08294 * 1 2 3 35 35 H 1.09001 * 109.50627 * 63.23692 * 4 2 1 36 36 H 1.09001 * 109.53921 * 303.13229 * 4 2 1 37 37 H 1.08997 * 109.47537 * 296.36426 * 6 5 4 38 38 H 1.08996 * 109.47125 * 56.36706 * 6 5 4 39 39 H 1.09001 * 109.47098 * 176.36606 * 6 5 4 40 40 H 1.08999 * 109.50907 * 181.45197 * 7 5 4 41 41 H 1.08994 * 109.54110 * 61.33440 * 7 5 4 42 42 H 1.09005 * 109.10358 * 11.61473 * 13 12 10 43 43 H 1.09006 * 111.41180 * 250.03649 * 13 12 10 44 44 H 1.09002 * 109.69965 * 297.61888 * 14 13 12 45 45 H 1.09000 * 109.70035 * 177.05964 * 14 13 12 46 46 H 1.09000 * 109.89259 * 26.07617 * 18 16 15 47 47 H 1.09003 * 109.89219 * 147.28094 * 18 16 15 48 48 H 0.97004 * 119.99932 * 180.02562 * 23 22 20 49 49 H 1.08993 * 110.41835 * 217.73854 * 28 19 18 50 50 H 1.08996 * 110.41953 * 95.27259 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2488 5 7 3.5092 -0.7872 -1.2053 6 6 4.0445 -1.4251 -2.4155 7 6 3.9648 -1.4870 0.0047 8 6 3.4343 -0.7559 1.2408 9 1 3.8542 0.2492 1.2772 10 6 3.8315 -1.5126 2.4820 11 8 2.9800 -2.0163 3.1836 12 7 5.1329 -1.6295 2.8125 13 6 6.1934 -1.0642 1.9480 14 6 7.1109 -0.2413 2.8641 15 8 7.6051 -1.0987 3.8910 16 6 6.6267 -1.6202 4.7908 17 1 6.2210 -0.8463 5.4423 18 6 7.3036 -2.7602 5.5919 19 7 7.0053 -4.0204 4.8642 20 6 7.4171 -5.2712 5.2397 21 1 7.1481 -6.1301 4.6428 22 6 8.1793 -5.4354 6.3882 23 7 8.5067 -4.3887 7.1159 24 14 8.7417 -7.1417 6.9000 25 1 8.2457 -8.1411 5.9199 26 1 10.2255 -7.1822 6.9411 27 1 8.2003 -7.4582 8.2461 28 6 6.1938 -3.7035 3.6726 29 6 5.5174 -2.3605 4.0106 30 1 4.6491 -2.5236 4.6490 31 8 2.0083 -0.6761 1.1659 32 1 -0.3634 -1.0276 0.0015 33 1 -0.3634 0.5152 0.8892 34 1 -0.3634 0.5126 -0.8908 35 1 1.7266 -0.1791 -2.1392 36 1 1.6337 -1.7341 -1.2771 37 1 3.7048 -2.4598 -2.4614 38 1 3.6921 -0.8876 -3.2957 39 1 5.1339 -1.4014 -2.3871 40 1 5.0544 -1.5000 0.0292 41 1 3.5886 -2.5100 -0.0025 42 1 5.7364 -0.4153 1.2008 43 1 6.7675 -1.8501 1.4569 44 1 6.5464 0.5779 3.3095 45 1 7.9443 0.1584 2.2864 46 1 8.3799 -2.5936 5.6367 47 1 6.8902 -2.8015 6.5996 48 1 9.0397 -4.5034 7.9183 49 1 5.4432 -4.4763 3.5072 50 1 6.8318 -3.5978 2.7952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083119353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:06 Heat of formation + Delta-G solvation = -84.525758 kcal Electronic energy + Delta-G solvation = -31883.456628 eV Core-core repulsion = 27718.714625 eV Total energy + Delta-G solvation = -4164.742003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10914 -40.78847 -39.42551 -37.42934 -36.86754 -36.03270 -34.42157 -33.76353 -31.52059 -30.76333 -29.32790 -28.93838 -28.01163 -26.68097 -25.68494 -24.53908 -23.45423 -22.44982 -22.10971 -21.47169 -20.05628 -19.06436 -18.66715 -18.07429 -17.53839 -17.25668 -16.98149 -16.81999 -16.48154 -16.27575 -16.20067 -15.76274 -15.52179 -15.40836 -15.04588 -14.83399 -14.55843 -14.20922 -13.99014 -13.72557 -13.69048 -13.46663 -13.32283 -13.08673 -13.02413 -12.95632 -12.78551 -12.71918 -12.55150 -12.50133 -12.23424 -12.17441 -12.02092 -11.82584 -11.77608 -11.44642 -11.08867 -10.82312 -10.79894 -10.72950 -9.68952 -9.56255 -8.96086 -7.88160 -5.24572 1.29334 1.40799 1.46489 1.47535 1.57736 2.47025 2.61792 2.69431 2.79885 3.31245 3.33270 3.44953 3.55473 3.57006 3.73931 3.82884 3.86885 3.96454 3.98547 4.06355 4.16521 4.21337 4.26769 4.30559 4.33083 4.49965 4.50732 4.57091 4.59069 4.67879 4.70954 4.72876 4.78918 4.83156 4.88492 4.92128 5.02078 5.03588 5.24165 5.28071 5.37859 5.40650 5.64934 5.72932 5.85632 5.98969 6.10971 6.21869 6.36895 6.92595 7.02841 7.67668 8.32995 9.23163 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002872 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.808875 B = 9747.101999 C = 9892.386287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.083 0.917 4 C 0.021 3.979 5 N -0.537 5.537 6 C 0.021 3.979 7 C 0.026 3.974 8 C 0.092 3.908 9 H 0.119 0.881 10 C 0.518 3.482 11 O -0.567 6.567 12 N -0.592 5.592 13 C 0.063 3.937 14 C 0.041 3.959 15 O -0.387 6.387 16 C 0.078 3.922 17 H 0.088 0.912 18 C 0.198 3.802 19 N -0.623 5.623 20 C -0.244 4.244 21 H 0.081 0.919 22 C -0.062 4.062 23 N -0.949 5.949 24 Si 0.982 3.018 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.141 3.859 29 C 0.113 3.887 30 H 0.085 0.915 31 O -0.388 6.388 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.032 0.968 37 H 0.022 0.978 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.028 0.972 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.138 0.862 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.250 0.750 49 H 0.030 0.970 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 15.033 -22.183 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.101 0.899 4 C -0.107 4.107 5 N -0.261 5.261 6 C -0.126 4.126 7 C -0.103 4.103 8 C 0.030 3.970 9 H 0.136 0.864 10 C 0.306 3.694 11 O -0.445 6.445 12 N -0.325 5.325 13 C -0.057 4.057 14 C -0.036 4.036 15 O -0.306 6.306 16 C 0.018 3.982 17 H 0.106 0.894 18 C 0.073 3.927 19 N -0.351 5.351 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.255 4.255 23 N -0.598 5.598 24 Si 0.810 3.190 25 H -0.192 1.192 26 H -0.215 1.215 27 H -0.218 1.218 28 C 0.015 3.985 29 C 0.007 3.993 30 H 0.103 0.897 31 O -0.307 6.307 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.046 0.954 42 H 0.151 0.849 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.156 0.844 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.052 15.044 -21.518 28.114 hybrid contribution -0.071 -2.001 0.737 2.133 sum -10.123 13.044 -20.782 26.542 Atomic orbital electron populations 1.21769 0.91343 1.02818 1.03946 1.22535 0.96098 0.95984 0.83083 0.89905 1.22951 0.87503 1.00162 1.00109 1.62318 1.09399 1.52134 1.02250 1.22506 1.01654 0.96878 0.91552 1.22852 1.02721 0.95230 0.89506 1.21808 0.83830 1.00202 0.91131 0.86371 1.20786 0.81723 0.80090 0.86763 1.90712 1.50725 1.48993 1.54052 1.47860 1.05807 1.54473 1.24400 1.23276 0.89322 0.99286 0.93848 1.23282 0.99629 0.91673 0.89019 1.87893 1.33902 1.65748 1.43063 1.23612 0.88606 0.95189 0.90757 0.89445 1.21313 0.97419 0.81831 0.92133 1.44974 1.60936 1.03334 1.25839 1.19448 1.27015 0.84314 1.06530 0.90157 1.25654 1.00795 1.01412 0.97680 1.70127 1.42940 1.29257 1.17470 0.84960 0.77358 0.79032 0.77632 1.19222 1.21535 1.21796 1.21585 0.92638 0.93976 0.90319 1.21959 0.97601 0.92378 0.87384 0.89716 1.88111 1.18733 1.79208 1.44634 0.92935 0.91955 0.87729 0.86559 0.95015 0.95972 0.89103 0.89735 0.86462 0.95414 0.84896 0.89139 0.91592 0.84421 0.95015 0.95157 0.94080 0.95136 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.57 71.98 0.69 -1.24 16 2 C 0.08 1.34 3.42 30.63 0.10 1.44 16 3 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.02 0.29 4.95 86.32 0.43 0.72 16 5 N -0.54 -7.71 4.99 -921.42 -4.59 -12.30 16 6 C 0.02 0.23 9.60 127.69 1.23 1.45 16 7 C 0.03 0.47 4.53 86.32 0.39 0.87 16 8 C 0.09 2.08 2.39 29.88 0.07 2.16 16 9 H 0.12 2.03 7.46 -2.39 -0.02 2.01 16 10 C 0.52 16.42 7.12 87.65 0.62 17.04 16 11 O -0.57 -24.01 15.91 15.92 0.25 -23.76 16 12 N -0.59 -17.54 2.78 -790.07 -2.20 -19.73 16 13 C 0.06 1.27 4.91 86.27 0.42 1.69 16 14 C 0.04 0.87 7.00 72.17 0.51 1.38 16 15 O -0.39 -13.52 9.99 -148.98 -1.49 -15.01 16 16 C 0.08 3.04 3.99 31.76 0.13 3.17 16 17 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 18 C 0.20 10.14 5.11 86.63 0.44 10.59 16 19 N -0.62 -33.64 3.44 -687.98 -2.36 -36.01 16 20 C -0.24 -14.21 10.28 84.03 0.86 -13.35 16 21 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 22 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 23 N -0.95 -57.77 10.31 21.65 0.22 -57.55 16 24 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 C 0.14 6.30 6.82 86.55 0.59 6.89 16 29 C 0.11 4.38 3.15 46.07 0.15 4.52 16 30 H 0.08 3.74 7.08 -2.39 -0.02 3.72 16 31 O -0.39 -10.20 9.65 -130.02 -1.25 -11.45 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 1.71 5.37 -2.39 -0.01 1.70 16 41 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.13 1.62 4.81 -2.38 -0.01 1.61 16 43 H 0.09 1.83 7.53 -2.38 -0.02 1.81 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.03 1.82 7.34 -2.39 -0.02 1.80 16 47 H 0.03 1.71 7.46 -2.39 -0.02 1.70 16 48 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 49 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.03 1.43 7.24 -2.39 -0.02 1.41 16 Total: -1.00 -79.53 380.67 -1.37 -80.90 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.93 Total: 11.93 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 7.10 Total: 34.19 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -8.93 Total: -125.59 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.49 Total: -50.21 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.53 -1.37 -80.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083119353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.627 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds