Wall clock time and date at job start Tue Mar 31 2020 23:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46929 * 2 1 4 4 C 1.53006 * 109.47411 * 119.99649 * 2 1 3 5 5 C 1.50694 * 109.46943 * 295.00235 * 4 2 1 6 6 N 1.34781 * 119.99963 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00168 * 359.72291 * 5 4 2 8 8 C 1.50705 * 109.47497 * 239.99722 * 2 1 3 9 9 O 1.21281 * 120.00107 * 263.07228 * 8 2 1 10 10 N 1.34779 * 119.99719 * 83.06255 * 8 2 1 11 11 C 1.46925 * 120.63025 * 4.67564 * 10 8 2 12 12 C 1.52760 * 109.00655 * 233.57908 * 11 10 8 13 13 C 1.53037 * 109.38201 * 305.58697 * 12 11 10 14 14 O 1.42905 * 109.46017 * 181.25788 * 13 12 11 15 15 C 1.42902 * 113.99600 * 89.93384 * 14 13 12 16 16 C 1.53944 * 113.74031 * 248.74114 * 15 14 13 17 17 N 1.47822 * 86.03495 * 222.08845 * 16 15 14 18 18 C 1.36935 * 134.45059 * 204.64770 * 17 16 15 19 19 H 1.08004 * 119.99801 * 179.86326 * 18 17 16 20 20 C 1.38814 * 120.00401 * 359.86069 * 18 17 16 21 21 N 1.31618 * 119.99718 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99957 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47224 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47199 * 119.99925 * 22 20 18 25 25 H 1.48499 * 109.47022 * 240.00282 * 22 20 18 26 26 C 1.47582 * 91.05078 * 24.54953 * 17 16 15 27 27 C 1.53050 * 109.53850 * 61.23968 * 13 12 11 28 28 C 1.46923 * 120.62738 * 184.94712 * 10 8 2 29 29 H 1.09000 * 109.46814 * 186.27998 * 1 2 3 30 30 H 1.08995 * 109.47249 * 306.27424 * 1 2 3 31 31 H 1.08999 * 109.47363 * 66.27960 * 1 2 3 32 32 H 1.08993 * 109.47176 * 174.99837 * 4 2 1 33 33 H 1.09005 * 109.46676 * 55.00159 * 4 2 1 34 34 H 0.96992 * 120.00064 * 179.71996 * 6 5 4 35 35 H 0.97000 * 119.99841 * 359.72989 * 6 5 4 36 36 H 1.09001 * 109.58800 * 353.41223 * 11 10 8 37 37 H 1.08992 * 109.58699 * 113.83838 * 11 10 8 38 38 H 1.09000 * 109.56611 * 185.54917 * 12 11 10 39 39 H 1.09004 * 109.36071 * 65.49622 * 12 11 10 40 40 H 1.08999 * 109.45107 * 301.22591 * 13 12 11 41 41 H 1.08998 * 112.94511 * 20.33390 * 15 14 13 42 42 H 1.09003 * 113.76973 * 336.34703 * 16 15 14 43 43 H 1.08996 * 113.77005 * 107.74757 * 16 15 14 44 44 H 0.97005 * 119.99276 * 179.97438 * 21 20 18 45 45 H 1.09002 * 113.76613 * 221.15710 * 26 17 16 46 46 H 1.08998 * 113.76791 * 89.75963 * 26 17 16 47 47 H 1.08998 * 109.49826 * 178.67915 * 27 13 12 48 48 H 1.09004 * 109.51940 * 58.60600 * 27 13 12 49 49 H 1.09005 * 109.58453 * 246.15650 * 28 10 8 50 50 H 1.08994 * 109.58656 * 6.44440 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 7 1.9845 -0.3917 3.7002 7 8 1.0157 1.0898 2.3630 8 6 2.0324 -0.7105 -1.2304 9 8 2.3540 -1.8782 -1.1676 10 7 2.1242 -0.0482 -2.4007 11 6 1.8360 1.3908 -2.4711 12 6 0.7890 1.6360 -3.5561 13 6 1.2711 1.0260 -4.8742 14 8 0.3063 1.2799 -5.8973 15 6 0.5201 2.5013 -6.6076 16 6 -0.5516 3.5724 -6.3352 17 7 -0.5032 3.8433 -7.7876 18 6 -0.7971 4.9271 -8.5712 19 1 -0.6710 4.8690 -9.6423 20 6 -1.2572 6.1003 -7.9891 21 7 -1.4104 6.1711 -6.6838 22 14 -1.6588 7.5784 -9.0584 23 1 -1.4027 7.2436 -10.4823 24 1 -3.0881 7.9416 -8.8842 25 1 -0.8043 8.7253 -8.6587 26 6 -0.0088 2.4784 -8.0532 27 6 1.4486 -0.4847 -4.7044 28 6 2.5085 -0.7528 -3.6314 29 1 -0.3633 -1.0215 0.1124 30 1 -0.3633 0.6080 0.8285 31 1 -0.3634 0.4134 -0.9408 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.7315 0.1113 4.4899 35 1 2.4848 -1.2178 3.7911 36 1 1.4519 1.7340 -1.5104 37 1 2.7479 1.9344 -2.7176 38 1 0.6404 2.7082 -3.6843 39 1 -0.1518 1.1704 -3.2623 40 1 2.2242 1.4743 -5.1545 41 1 1.5419 2.8706 -6.5199 42 1 -1.5039 3.1648 -5.9959 43 1 -0.1987 4.4006 -5.7206 44 1 -1.7315 6.9911 -6.2771 45 1 0.7767 2.4347 -8.8077 46 1 -0.8012 1.7487 -8.2196 47 1 1.7694 -0.9218 -5.6499 48 1 0.5017 -0.9307 -4.4001 49 1 3.4764 -0.3874 -3.9745 50 1 2.5704 -1.8232 -3.4354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105716868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:59 Heat of formation + Delta-G solvation = -69.287748 kcal Electronic energy + Delta-G solvation = -30125.018914 eV Core-core repulsion = 25960.937680 eV Total energy + Delta-G solvation = -4164.081233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83081 -39.72209 -38.73558 -37.36019 -35.44275 -34.57251 -34.06669 -32.22278 -31.48339 -31.17080 -28.22798 -27.46567 -25.52519 -24.79927 -23.93326 -23.24202 -22.65896 -21.26173 -20.44320 -19.46538 -18.79218 -18.16152 -17.46622 -16.90125 -16.74937 -16.27793 -15.89495 -15.77529 -15.37974 -15.00209 -14.71474 -14.48590 -14.26897 -14.08235 -13.73414 -13.69866 -13.42081 -13.21547 -12.85195 -12.69150 -12.44822 -12.20034 -11.97524 -11.95588 -11.70333 -11.53131 -11.39314 -11.27691 -11.22265 -11.07467 -10.89388 -10.59017 -10.44374 -10.32950 -10.29515 -10.09418 -9.96314 -9.77850 -9.54091 -8.88010 -8.80458 -8.71696 -6.89975 -5.78228 -3.10933 2.26442 2.40248 2.68195 3.21140 3.38399 3.43425 3.46385 3.96335 4.15331 4.38318 4.47721 4.57473 4.66031 4.70401 4.85505 4.94370 5.02577 5.13311 5.17277 5.22646 5.30383 5.31961 5.39030 5.41974 5.50502 5.51043 5.60900 5.63575 5.65925 5.74451 5.75517 5.84129 5.92928 6.05298 6.13309 6.24748 6.37543 6.39325 6.41672 6.63435 6.65723 6.89404 7.11481 7.17692 7.23175 7.52403 7.87029 7.88110 7.94696 7.97394 9.03240 9.69016 10.57944 11.39091 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.002201 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.261488 B =12715.851806 C =14087.364566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 H 0.103 0.897 4 C -0.125 4.125 5 C 0.518 3.482 6 N -0.858 5.858 7 O -0.538 6.538 8 C 0.523 3.477 9 O -0.548 6.548 10 N -0.609 5.609 11 C 0.104 3.896 12 C -0.158 4.158 13 C 0.093 3.907 14 O -0.372 6.372 15 C 0.034 3.966 16 C 0.150 3.850 17 N -0.609 5.609 18 C -0.221 4.221 19 H 0.082 0.918 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.120 3.880 27 C -0.131 4.131 28 C 0.115 3.885 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.402 0.598 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 -16.270 18.439 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.121 0.879 4 C -0.166 4.166 5 C 0.303 3.697 6 N -0.421 5.421 7 O -0.414 6.414 8 C 0.311 3.689 9 O -0.426 6.426 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.197 4.197 13 C 0.035 3.965 14 O -0.290 6.290 15 C -0.024 4.024 16 C 0.025 3.975 17 N -0.338 5.338 18 C -0.348 4.348 19 H 0.100 0.900 20 C -0.206 4.206 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.006 4.006 27 C -0.170 4.170 28 C -0.008 4.008 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.232 0.768 35 H 0.230 0.770 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.295 -16.049 18.074 26.272 hybrid contribution -0.056 0.885 -0.148 0.899 sum 10.239 -15.164 17.926 25.615 Atomic orbital electron populations 1.21889 0.91657 1.02923 1.04125 1.21054 0.98834 1.00806 0.91092 0.87890 1.21493 1.03393 1.00509 0.91157 1.20661 0.78398 0.85389 0.85250 1.43889 1.60554 1.29359 1.08343 1.90746 1.39627 1.24354 1.86681 1.20589 0.76951 0.86838 0.84493 1.90666 1.49871 1.16746 1.85285 1.48160 1.67948 1.09924 1.08130 1.21818 0.99245 0.79978 1.00844 1.22415 0.99192 1.03109 0.94976 1.21986 0.91946 0.94644 0.87964 1.87951 1.51111 1.41481 1.48485 1.25073 0.99474 0.84441 0.93433 1.22747 0.94233 0.93163 0.87369 1.45712 1.77360 1.07221 1.03484 1.19039 1.37691 0.88292 0.89789 0.90043 1.24814 1.01619 0.98078 0.96052 1.69837 1.51690 1.26836 1.08378 0.86019 0.77741 0.82567 0.79274 1.20416 1.21689 1.21670 1.22737 0.96085 0.88378 0.93382 1.22000 0.99996 0.95920 0.99036 1.21599 0.97183 0.98815 0.83162 0.92430 0.89438 0.91742 0.88393 0.87664 0.76819 0.76980 0.88879 0.90901 0.89413 0.90599 0.92330 0.90213 0.94880 0.90964 0.93647 0.93627 0.94024 0.89976 0.90754 0.91315 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.65 37.16 0.32 -1.10 16 2 C -0.10 -0.88 1.52 -91.77 -0.14 -1.02 16 3 H 0.10 0.92 6.19 -51.93 -0.32 0.60 16 4 C -0.13 -0.91 4.59 -27.88 -0.13 -1.04 16 5 C 0.52 4.09 7.84 -10.99 -0.09 4.01 16 6 N -0.86 -3.62 8.87 31.22 0.28 -3.35 16 7 O -0.54 -6.35 14.82 5.56 0.08 -6.27 16 8 C 0.52 5.78 6.82 -10.98 -0.07 5.71 16 9 O -0.55 -7.44 15.60 5.56 0.09 -7.35 16 10 N -0.61 -6.34 2.98 -173.04 -0.52 -6.86 16 11 C 0.10 1.00 6.05 -3.93 -0.02 0.98 16 12 C -0.16 -1.91 5.68 -26.83 -0.15 -2.06 16 13 C 0.09 1.21 2.57 -26.69 -0.07 1.15 16 14 O -0.37 -6.37 10.01 -35.23 -0.35 -6.72 16 15 C 0.03 0.66 4.44 -25.80 -0.11 0.54 16 16 C 0.15 3.60 7.36 -2.83 -0.02 3.58 16 17 N -0.61 -15.99 3.70 -177.95 -0.66 -16.65 16 18 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 19 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -27.40 11.39 55.49 0.63 -26.76 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.12 2.56 8.77 -2.96 -0.03 2.54 16 27 C -0.13 -1.47 5.73 -26.61 -0.15 -1.62 16 28 C 0.11 1.16 6.42 -3.71 -0.02 1.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.92 6.10 -51.93 -0.32 0.60 16 31 H 0.06 0.64 7.75 -51.93 -0.40 0.23 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.72 8.04 -51.93 -0.42 0.31 16 34 H 0.40 1.43 8.93 -40.82 -0.36 1.06 16 35 H 0.40 0.57 8.83 -40.82 -0.36 0.21 16 36 H 0.09 0.81 5.19 -51.93 -0.27 0.54 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.73 7.43 -51.93 -0.39 0.34 16 41 H 0.08 1.45 7.47 -51.93 -0.39 1.06 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 1.02 7.03 -51.93 -0.37 0.65 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -35.55 396.72 -8.60 -44.15 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.16 Total: 0.64 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.95 Total: 6.00 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.27 Total: -53.62 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.18 Total: -20.33 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.55 -8.60 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105716868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.141 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds