Wall clock time and date at job start Tue Mar 31 2020 22:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99273 * 2 1 4 4 H 1.08995 * 109.47264 * 329.99427 * 3 2 1 5 5 C 1.52996 * 109.47153 * 90.00157 * 3 2 1 6 6 C 1.52999 * 109.46458 * 209.99795 * 3 2 1 7 7 C 1.52999 * 109.47271 * 65.00190 * 6 3 2 8 8 C 1.50698 * 109.47529 * 179.97438 * 7 6 3 9 9 O 1.21290 * 119.99587 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00464 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00071 * 180.02562 * 10 8 7 12 12 H 1.08992 * 110.85800 * 34.29484 * 11 10 8 13 13 C 1.54627 * 110.96596 * 270.50460 * 11 10 8 14 14 C 1.51277 * 104.19973 * 266.64318 * 13 11 10 15 15 O 1.21275 * 124.94669 * 163.78311 * 14 13 11 16 16 N 1.34421 * 110.11371 * 343.74780 * 14 13 11 17 17 C 1.46504 * 124.35084 * 179.56967 * 16 14 13 18 18 C 1.53944 * 113.74274 * 38.71566 * 17 16 14 19 19 N 1.47810 * 86.03881 * 222.08803 * 18 17 16 20 20 C 1.36930 * 134.45571 * 204.65070 * 19 18 17 21 21 H 1.08002 * 120.00408 * 173.34192 * 20 19 18 22 22 C 1.38817 * 120.00111 * 353.33866 * 20 19 18 23 23 N 1.31620 * 119.99779 * 5.07368 * 22 20 19 24 24 Si 1.86803 * 120.00251 * 185.06608 * 22 20 19 25 25 H 1.48493 * 109.47048 * 94.98818 * 24 22 20 26 26 H 1.48497 * 109.46900 * 214.99069 * 24 22 20 27 27 H 1.48502 * 109.46814 * 334.98677 * 24 22 20 28 28 C 1.47578 * 91.05112 * 24.54943 * 19 18 17 29 29 C 1.46761 * 111.30012 * 359.59511 * 16 14 13 30 30 H 1.08998 * 109.47217 * 60.00264 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47395 * 299.99935 * 1 2 3 33 33 H 1.09006 * 109.47294 * 59.99817 * 5 3 2 34 34 H 1.09002 * 109.47125 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47097 * 299.99624 * 5 3 2 36 36 H 1.08995 * 109.47879 * 305.00065 * 6 3 2 37 37 H 1.09002 * 109.47102 * 184.99685 * 6 3 2 38 38 H 1.09006 * 109.47278 * 59.99761 * 7 6 3 39 39 H 1.08995 * 109.47475 * 299.99804 * 7 6 3 40 40 H 0.96995 * 119.99548 * 359.97438 * 10 8 7 41 41 H 1.09004 * 110.48902 * 25.32169 * 13 11 10 42 42 H 1.09008 * 110.48505 * 147.83407 * 13 11 10 43 43 H 1.09001 * 112.94635 * 170.31265 * 17 16 14 44 44 H 1.09003 * 113.76752 * 336.35194 * 18 17 16 45 45 H 1.09000 * 113.76607 * 107.74312 * 18 17 16 46 46 H 0.96999 * 120.00138 * 180.02562 * 23 22 20 47 47 H 1.09004 * 113.76786 * 221.15594 * 28 19 18 48 48 H 1.09003 * 113.76982 * 89.75715 * 28 19 18 49 49 H 1.09006 * 110.24524 * 258.00884 * 29 16 14 50 50 H 1.09007 * 110.24684 * 136.01681 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.3588 1.2634 -0.7212 7 6 3.1383 0.9185 -2.1954 8 6 4.4666 0.8775 -2.9060 9 8 5.4891 1.1016 -2.2934 10 7 4.5183 0.5918 -4.2221 11 6 5.8097 0.5515 -4.9127 12 1 6.5911 0.1749 -4.2527 13 6 6.1816 1.9441 -5.4724 14 6 5.6628 1.9237 -6.8932 15 8 5.5005 2.9046 -7.5877 16 7 5.4084 0.6600 -7.2744 17 6 4.8856 0.2826 -8.5899 18 6 5.4713 1.1081 -9.7497 19 7 4.0932 1.1466 -10.2828 20 6 3.5516 1.3075 -11.5301 21 1 2.4879 1.1904 -11.6762 22 6 4.3696 1.6212 -12.6068 23 7 5.6756 1.6658 -12.4500 24 14 3.6168 1.9799 -14.2784 25 1 3.4426 3.4459 -14.4386 26 1 4.5141 1.4685 -15.3454 27 1 2.2952 1.3103 -14.3800 28 6 3.5359 0.9395 -8.9321 29 6 5.7213 -0.2932 -6.2031 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.8829 1.0776 1.9563 34 1 2.6612 2.7672 1.4425 35 1 1.2567 1.8015 1.9563 36 1 3.9931 0.5054 -0.2618 37 1 3.8425 2.2372 -0.6444 38 1 2.5040 1.6766 -2.6550 39 1 2.6545 -0.0552 -2.2724 40 1 3.7006 0.4122 -4.7119 41 1 5.6904 2.7297 -4.8982 42 1 7.2627 2.0836 -5.4609 43 1 4.9063 -0.7934 -8.7627 44 1 5.8524 2.0832 -9.4464 45 1 6.1702 0.5526 -10.3751 46 1 6.2472 1.8854 -13.2023 47 1 2.6924 0.2496 -8.9059 48 1 3.3472 1.8650 -8.3880 49 1 6.6754 -0.7821 -6.4000 50 1 4.9277 -1.0352 -6.1147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108536651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:47 Heat of formation + Delta-G solvation = -57.805978 kcal Electronic energy + Delta-G solvation = -29710.943616 eV Core-core repulsion = 25547.360269 eV Total energy + Delta-G solvation = -4163.583346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79548 -39.67373 -38.67478 -37.25980 -36.38441 -34.07803 -33.94472 -32.20676 -30.98338 -30.00120 -27.58629 -27.22688 -27.01791 -24.94865 -24.74988 -23.40974 -21.96013 -21.28989 -20.68935 -20.29434 -18.29970 -17.45653 -17.25524 -16.97586 -16.68437 -16.29430 -15.72627 -15.54662 -15.45531 -15.07149 -14.87487 -14.49868 -14.03532 -13.85879 -13.81076 -13.62898 -13.44979 -13.23400 -13.00316 -12.75241 -12.63841 -12.58256 -11.99966 -11.86182 -11.78782 -11.73478 -11.69562 -11.46920 -11.42007 -11.34635 -10.99425 -10.84765 -10.71428 -10.22830 -10.12832 -9.97750 -9.95614 -9.59876 -9.49590 -9.14554 -8.65505 -8.18437 -6.81130 -5.74573 -3.05620 2.41198 2.84026 2.96548 3.25705 3.37249 3.41788 3.47329 3.48543 4.23353 4.34007 4.41496 4.44532 4.50933 4.64337 4.76990 4.80425 4.87772 4.93366 4.96081 5.05776 5.11825 5.22885 5.23196 5.28708 5.31731 5.36671 5.42435 5.49255 5.53423 5.61879 5.66323 5.66864 5.71100 5.74493 5.84363 5.91208 6.22848 6.26720 6.50052 6.57861 6.80029 6.87447 7.22989 7.26811 7.49976 7.58063 7.64118 7.98213 7.99949 8.57450 9.07148 9.73574 10.63397 11.43282 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002048 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.315323 B =13670.118305 C =14527.693907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.082 3.918 4 H 0.062 0.938 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.141 4.141 8 C 0.517 3.483 9 O -0.540 6.540 10 N -0.722 5.722 11 C 0.134 3.866 12 H 0.115 0.885 13 C -0.166 4.166 14 C 0.512 3.488 15 O -0.510 6.510 16 N -0.609 5.609 17 C 0.098 3.902 18 C 0.156 3.844 19 N -0.605 5.605 20 C -0.223 4.223 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.112 3.888 29 C 0.095 3.905 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.404 0.596 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.254 0.746 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.085 0.915 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 -5.630 27.386 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.180 4.180 8 C 0.304 3.696 9 O -0.417 6.417 10 N -0.375 5.375 11 C 0.028 3.972 12 H 0.133 0.867 13 C -0.208 4.208 14 C 0.298 3.702 15 O -0.384 6.384 16 N -0.345 5.345 17 C -0.005 4.005 18 C 0.030 3.970 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.562 5.562 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.016 4.016 29 C -0.029 4.029 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.239 0.761 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.103 0.897 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.011 -5.079 27.009 27.935 hybrid contribution -1.029 0.417 -1.195 1.631 sum -6.040 -4.662 25.814 26.918 Atomic orbital electron populations 1.22788 0.81214 1.02763 0.99929 1.87940 1.19491 1.27842 1.95091 1.22213 0.94893 0.84669 0.95750 0.92025 1.22267 1.02310 1.01926 0.96718 1.21456 0.95633 1.03844 0.92851 1.21662 0.95100 1.04855 0.96432 1.20745 0.91664 0.75572 0.81613 1.90711 1.36300 1.48553 1.66097 1.46072 1.09560 1.72193 1.09648 1.21837 0.86971 0.95205 0.93190 0.86721 1.22820 1.03935 0.98812 0.95237 1.20693 0.77667 0.83171 0.88635 1.90789 1.52119 1.36680 1.58821 1.48536 1.64781 1.06721 1.14445 1.24071 0.96760 0.99967 0.79676 1.22735 0.89301 0.97263 0.87733 1.45684 1.02354 1.84803 1.00274 1.18971 0.92480 1.41257 0.82338 0.90176 1.24850 0.95557 1.01711 0.98230 1.69844 1.02066 1.53835 1.30498 0.86117 0.78011 0.78163 0.83584 1.21597 1.21703 1.20551 1.22911 0.94038 0.96833 0.87773 1.22342 1.02495 0.92514 0.85582 0.93936 0.89666 0.94214 0.91594 0.91400 0.92537 0.90137 0.89766 0.89003 0.88086 0.76078 0.88229 0.87160 0.87714 0.92414 0.91617 0.93611 0.94099 0.94378 0.89667 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -2.99 9.88 -35.23 -0.35 -3.33 16 3 C 0.08 0.54 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 5 C -0.17 -1.02 9.53 37.16 0.35 -0.67 16 6 C -0.10 -0.75 4.21 -26.73 -0.11 -0.86 16 7 C -0.14 -0.98 5.60 -27.88 -0.16 -1.14 16 8 C 0.52 4.95 7.83 -10.99 -0.09 4.86 16 9 O -0.54 -7.01 15.67 5.55 0.09 -6.92 16 10 N -0.72 -6.17 5.14 -52.23 -0.27 -6.43 16 11 C 0.13 1.25 3.48 -66.30 -0.23 1.02 16 12 H 0.11 1.02 7.63 -51.93 -0.40 0.63 16 13 C -0.17 -1.99 6.58 -26.74 -0.18 -2.17 16 14 C 0.51 8.54 7.42 -10.86 -0.08 8.46 16 15 O -0.51 -11.34 14.61 5.56 0.08 -11.26 16 16 N -0.61 -9.03 3.16 -166.63 -0.53 -9.55 16 17 C 0.10 1.82 4.81 -70.14 -0.34 1.48 16 18 C 0.16 3.87 6.81 -2.84 -0.02 3.85 16 19 N -0.60 -16.20 3.70 -177.87 -0.66 -16.85 16 20 C -0.22 -6.46 10.70 -15.06 -0.16 -6.62 16 21 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -28.15 11.51 55.49 0.64 -27.51 16 24 Si 0.91 22.68 29.56 -169.99 -5.02 17.66 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.11 2.37 8.44 -2.97 -0.03 2.35 16 29 C 0.10 0.91 6.97 -3.12 -0.02 0.89 16 30 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 36 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 37 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.64 7.82 -51.93 -0.41 0.23 16 40 H 0.40 2.89 8.62 -40.82 -0.35 2.54 16 41 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 42 H 0.11 1.18 8.14 -51.92 -0.42 0.76 16 43 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.06 1.60 5.72 -51.93 -0.30 1.30 16 45 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.04 0.87 7.25 -51.93 -0.38 0.49 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.66 8.06 -51.92 -0.42 0.24 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -37.45 405.60 -8.49 -45.94 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.46 Total: -0.73 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -0.13 Total: 12.88 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.81 Total: -60.35 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.18 Total: -21.52 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.45 -8.49 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108536651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.865 kcal (2) G-P(sol) polarization free energy of solvation -37.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds