Wall clock time and date at job start Tue Mar 31 2020 22:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99273 * 2 1 4 4 H 1.08995 * 109.47264 * 329.99427 * 3 2 1 5 5 C 1.52996 * 109.47153 * 90.00157 * 3 2 1 6 6 C 1.52999 * 109.46458 * 209.99795 * 3 2 1 7 7 C 1.52999 * 109.47271 * 65.00190 * 6 3 2 8 8 C 1.50698 * 109.47529 * 179.97438 * 7 6 3 9 9 O 1.21290 * 119.99587 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00464 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00071 * 180.02562 * 10 8 7 12 12 H 1.08992 * 110.85800 * 34.29484 * 11 10 8 13 13 C 1.54627 * 110.96596 * 270.50460 * 11 10 8 14 14 C 1.51277 * 104.19973 * 266.64318 * 13 11 10 15 15 O 1.21275 * 124.94669 * 163.78311 * 14 13 11 16 16 N 1.34421 * 110.11371 * 343.74780 * 14 13 11 17 17 C 1.46504 * 124.35084 * 179.56967 * 16 14 13 18 18 C 1.53944 * 113.74274 * 38.71566 * 17 16 14 19 19 N 1.47810 * 86.03881 * 222.08803 * 18 17 16 20 20 C 1.36930 * 134.45571 * 204.65070 * 19 18 17 21 21 H 1.08002 * 120.00408 * 173.34192 * 20 19 18 22 22 C 1.38817 * 120.00111 * 353.33866 * 20 19 18 23 23 N 1.31620 * 119.99779 * 5.07368 * 22 20 19 24 24 Si 1.86803 * 120.00251 * 185.06608 * 22 20 19 25 25 H 1.48493 * 109.47048 * 94.98818 * 24 22 20 26 26 H 1.48497 * 109.46900 * 214.99069 * 24 22 20 27 27 H 1.48502 * 109.46814 * 334.98677 * 24 22 20 28 28 C 1.47578 * 91.05112 * 24.54943 * 19 18 17 29 29 C 1.46761 * 111.30012 * 359.59511 * 16 14 13 30 30 H 1.08998 * 109.47217 * 60.00264 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47395 * 299.99935 * 1 2 3 33 33 H 1.09006 * 109.47294 * 59.99817 * 5 3 2 34 34 H 1.09002 * 109.47125 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47097 * 299.99624 * 5 3 2 36 36 H 1.08995 * 109.47879 * 305.00065 * 6 3 2 37 37 H 1.09002 * 109.47102 * 184.99685 * 6 3 2 38 38 H 1.09006 * 109.47278 * 59.99761 * 7 6 3 39 39 H 1.08995 * 109.47475 * 299.99804 * 7 6 3 40 40 H 0.96995 * 119.99548 * 359.97438 * 10 8 7 41 41 H 1.09004 * 110.48902 * 25.32169 * 13 11 10 42 42 H 1.09008 * 110.48505 * 147.83407 * 13 11 10 43 43 H 1.09001 * 112.94635 * 170.31265 * 17 16 14 44 44 H 1.09003 * 113.76752 * 336.35194 * 18 17 16 45 45 H 1.09000 * 113.76607 * 107.74312 * 18 17 16 46 46 H 0.96999 * 120.00138 * 180.02562 * 23 22 20 47 47 H 1.09004 * 113.76786 * 221.15594 * 28 19 18 48 48 H 1.09003 * 113.76982 * 89.75715 * 28 19 18 49 49 H 1.09006 * 110.24524 * 258.00884 * 29 16 14 50 50 H 1.09007 * 110.24684 * 136.01681 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.3588 1.2634 -0.7212 7 6 3.1383 0.9185 -2.1954 8 6 4.4666 0.8775 -2.9060 9 8 5.4891 1.1016 -2.2934 10 7 4.5183 0.5918 -4.2221 11 6 5.8097 0.5515 -4.9127 12 1 6.5911 0.1749 -4.2527 13 6 6.1816 1.9441 -5.4724 14 6 5.6628 1.9237 -6.8932 15 8 5.5005 2.9046 -7.5877 16 7 5.4084 0.6600 -7.2744 17 6 4.8856 0.2826 -8.5899 18 6 5.4713 1.1081 -9.7497 19 7 4.0932 1.1466 -10.2828 20 6 3.5516 1.3075 -11.5301 21 1 2.4879 1.1904 -11.6762 22 6 4.3696 1.6212 -12.6068 23 7 5.6756 1.6658 -12.4500 24 14 3.6168 1.9799 -14.2784 25 1 3.4426 3.4459 -14.4386 26 1 4.5141 1.4685 -15.3454 27 1 2.2952 1.3103 -14.3800 28 6 3.5359 0.9395 -8.9321 29 6 5.7213 -0.2932 -6.2031 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.8829 1.0776 1.9563 34 1 2.6612 2.7672 1.4425 35 1 1.2567 1.8015 1.9563 36 1 3.9931 0.5054 -0.2618 37 1 3.8425 2.2372 -0.6444 38 1 2.5040 1.6766 -2.6550 39 1 2.6545 -0.0552 -2.2724 40 1 3.7006 0.4122 -4.7119 41 1 5.6904 2.7297 -4.8982 42 1 7.2627 2.0836 -5.4609 43 1 4.9063 -0.7934 -8.7627 44 1 5.8524 2.0832 -9.4464 45 1 6.1702 0.5526 -10.3751 46 1 6.2472 1.8854 -13.2023 47 1 2.6924 0.2496 -8.9059 48 1 3.3472 1.8650 -8.3880 49 1 6.6754 -0.7821 -6.4000 50 1 4.9277 -1.0352 -6.1147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108536651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:46 Heat of formation + Delta-G solvation = -85.941743 kcal Electronic energy + Delta-G solvation = -29712.163674 eV Core-core repulsion = 25547.360269 eV Total energy + Delta-G solvation = -4164.803405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92430 -40.61420 -39.26544 -38.88380 -37.61030 -35.08996 -34.64577 -34.10834 -31.96989 -30.86083 -29.17919 -28.39938 -27.50277 -26.61422 -25.65366 -25.12812 -22.75131 -22.11483 -21.91032 -21.28895 -19.72831 -18.79272 -18.16282 -17.86868 -17.72590 -17.67803 -16.90103 -16.49815 -16.30430 -16.07142 -15.90214 -15.74987 -15.52047 -15.11550 -14.78100 -14.61228 -14.45363 -14.22672 -14.07727 -13.79628 -13.45178 -13.40717 -13.29212 -13.16162 -13.14719 -12.87202 -12.76846 -12.67404 -12.46225 -12.36766 -12.18988 -12.02160 -12.01005 -11.86031 -11.52481 -11.49998 -11.06970 -10.87805 -10.62612 -10.48543 -10.08121 -9.55484 -8.93345 -7.94942 -5.28216 1.41961 1.45920 1.54412 1.61469 1.68720 1.99138 2.18119 2.47857 2.92523 3.23459 3.36483 3.47825 3.48628 3.75783 3.80219 3.86219 3.88745 4.15801 4.24034 4.26394 4.27087 4.40412 4.53028 4.54096 4.56540 4.63514 4.66528 4.69166 4.74647 4.78981 4.82483 4.84989 4.91586 4.94219 4.94332 5.02447 5.11375 5.18827 5.25259 5.26261 5.36180 5.47255 5.49942 5.85567 5.89475 6.27728 6.35650 6.55215 6.87106 7.26291 7.27483 7.56740 8.52941 9.23223 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002048 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.315323 B =13670.118305 C =14527.693907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.083 3.917 4 H 0.075 0.925 5 C -0.174 4.174 6 C -0.098 4.098 7 C -0.134 4.134 8 C 0.517 3.483 9 O -0.576 6.576 10 N -0.715 5.715 11 C 0.146 3.854 12 H 0.130 0.870 13 C -0.155 4.155 14 C 0.502 3.498 15 O -0.576 6.576 16 N -0.605 5.605 17 C 0.137 3.863 18 C 0.149 3.851 19 N -0.636 5.636 20 C -0.236 4.236 21 H 0.089 0.911 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.982 3.018 25 H -0.293 1.293 26 H -0.291 1.291 27 H -0.260 1.260 28 C 0.115 3.885 29 C 0.096 3.904 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.414 0.586 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.021 0.979 45 H 0.036 0.964 46 H 0.248 0.752 47 H 0.072 0.928 48 H 0.023 0.977 49 H 0.109 0.891 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 -7.472 28.788 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.026 3.974 4 H 0.093 0.907 5 C -0.232 4.232 6 C -0.136 4.136 7 C -0.173 4.173 8 C 0.305 3.695 9 O -0.456 6.456 10 N -0.368 5.368 11 C 0.040 3.960 12 H 0.147 0.853 13 C -0.196 4.196 14 C 0.291 3.709 15 O -0.455 6.455 16 N -0.339 5.339 17 C 0.033 3.967 18 C 0.023 3.977 19 N -0.363 5.363 20 C -0.364 4.364 21 H 0.106 0.894 22 C -0.264 4.264 23 N -0.602 5.602 24 Si 0.810 3.190 25 H -0.220 1.220 26 H -0.218 1.218 27 H -0.184 1.184 28 C -0.011 4.011 29 C -0.026 4.026 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.250 0.750 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.156 0.844 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.040 0.960 49 H 0.127 0.873 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.711 -6.982 28.470 30.072 hybrid contribution -0.523 1.010 -1.540 1.915 sum -7.234 -5.971 26.929 28.516 Atomic orbital electron populations 1.22931 0.80061 1.03523 1.00677 1.87909 1.20846 1.28443 1.95222 1.22223 0.94505 0.84677 0.96007 0.90700 1.22266 1.02484 1.02000 0.96446 1.21401 0.95939 1.02896 0.93340 1.21662 0.93898 1.06049 0.95735 1.21162 0.92036 0.74570 0.81687 1.90702 1.37706 1.50258 1.66900 1.46045 1.09731 1.71577 1.09419 1.21781 0.87800 0.93138 0.93292 0.85256 1.22776 1.04501 1.00610 0.91757 1.21530 0.76643 0.82754 0.90009 1.90759 1.54841 1.38990 1.60952 1.48477 1.63662 1.07535 1.14205 1.23381 0.93518 1.00153 0.79628 1.22537 0.88527 0.96402 0.90240 1.46122 1.03796 1.84812 1.01536 1.19442 0.93017 1.40228 0.83741 0.89376 1.25782 0.96029 1.02254 1.02319 1.70055 1.03468 1.55401 1.31245 0.85009 0.77914 0.77477 0.78645 1.22026 1.21766 1.18393 1.22996 0.96363 0.96887 0.84857 1.22688 1.04900 0.91686 0.83296 0.93037 0.88995 0.93608 0.92583 0.90748 0.91894 0.91971 0.90324 0.87264 0.86914 0.74958 0.88688 0.85753 0.84444 0.96073 0.94579 0.94284 0.91037 0.95969 0.87296 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.43 16 2 O -0.40 -5.59 9.88 -148.98 -1.47 -7.06 16 3 C 0.08 0.96 2.72 30.59 0.08 1.04 16 4 H 0.08 0.66 7.79 -2.39 -0.02 0.64 16 5 C -0.17 -1.86 9.53 71.98 0.69 -1.17 16 6 C -0.10 -1.35 4.21 30.59 0.13 -1.22 16 7 C -0.13 -1.56 5.60 29.85 0.17 -1.40 16 8 C 0.52 8.74 7.83 87.66 0.69 9.42 16 9 O -0.58 -14.09 15.67 -3.06 -0.05 -14.14 16 10 N -0.72 -9.98 5.14 -437.54 -2.25 -12.23 16 11 C 0.15 2.26 3.48 46.05 0.16 2.42 16 12 H 0.13 1.82 7.63 -2.39 -0.02 1.80 16 13 C -0.16 -3.47 6.58 30.59 0.20 -3.27 16 14 C 0.50 16.60 7.42 87.90 0.65 17.25 16 15 O -0.58 -26.78 14.61 -3.02 -0.04 -26.83 16 16 N -0.61 -16.73 3.16 -799.69 -2.52 -19.26 16 17 C 0.14 4.88 4.81 46.75 0.22 5.11 16 18 C 0.15 7.66 6.81 86.44 0.59 8.25 16 19 N -0.64 -34.49 3.70 -716.67 -2.65 -37.14 16 20 C -0.24 -13.81 10.70 84.04 0.90 -12.92 16 21 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 23 N -0.95 -60.71 11.51 21.65 0.25 -60.46 16 24 Si 0.98 47.34 29.56 68.60 2.03 49.37 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.12 4.77 8.44 86.49 0.73 5.50 16 29 C 0.10 1.45 6.97 86.83 0.60 2.06 16 30 H 0.05 0.34 8.08 -2.39 -0.02 0.32 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.33 7.87 -2.39 -0.02 0.31 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.58 7.87 -2.39 -0.02 0.56 16 36 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.11 1.10 7.82 -2.39 -0.02 1.08 16 40 H 0.41 4.39 8.62 -92.71 -0.80 3.59 16 41 H 0.09 2.26 8.09 -2.38 -0.02 2.24 16 42 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.14 4.09 8.14 -2.39 -0.02 4.08 16 44 H 0.02 1.25 5.72 -2.39 -0.01 1.24 16 45 H 0.04 2.02 7.37 -2.39 -0.02 2.01 16 46 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 48 H 0.02 1.01 7.25 -2.39 -0.02 1.00 16 49 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.11 1.15 8.06 -2.38 -0.02 1.13 16 Total: -1.00 -86.83 405.60 0.93 -85.91 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.13 Total: 13.11 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 7.50 Total: 28.75 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -7.17 Total: -129.10 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -1.56 Total: -48.03 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -86.83 0.93 -85.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108536651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.035 kcal (2) G-P(sol) polarization free energy of solvation -86.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds