Wall clock time and date at job start Tue Mar 31 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99880 * 2 1 4 4 H 1.09000 * 109.46977 * 329.99405 * 3 2 1 5 5 C 1.52998 * 109.47375 * 89.99731 * 3 2 1 6 6 C 1.53004 * 109.46863 * 209.99693 * 3 2 1 7 7 C 1.53005 * 109.47227 * 64.99706 * 6 3 2 8 8 C 1.50696 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.85392 * 328.79501 * 11 10 8 13 13 C 1.54626 * 111.00103 * 92.60480 * 11 10 8 14 14 C 1.51291 * 104.25547 * 142.71383 * 13 11 10 15 15 O 1.21280 * 124.94051 * 164.01255 * 14 13 11 16 16 N 1.34415 * 110.11361 * 344.14971 * 14 13 11 17 17 C 1.46502 * 124.34954 * 179.43943 * 16 14 13 18 18 C 1.53495 * 114.20341 * 299.69621 * 17 16 14 19 19 N 1.47066 * 87.98658 * 87.71675 * 18 17 16 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 17 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 17 29 29 C 1.46761 * 111.30076 * 359.16442 * 16 14 13 30 30 H 1.08997 * 109.47406 * 300.00272 * 1 2 3 31 31 H 1.08997 * 109.46875 * 60.00915 * 1 2 3 32 32 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46673 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46943 * 299.99851 * 5 3 2 35 35 H 1.09000 * 109.47334 * 59.99892 * 5 3 2 36 36 H 1.08996 * 109.46854 * 304.99801 * 6 3 2 37 37 H 1.08998 * 109.47246 * 184.99536 * 6 3 2 38 38 H 1.09000 * 109.46868 * 59.99554 * 7 6 3 39 39 H 1.08998 * 109.46868 * 300.00061 * 7 6 3 40 40 H 0.97004 * 119.99987 * 0.02562 * 10 8 7 41 41 H 1.08997 * 110.49066 * 261.61532 * 13 11 10 42 42 H 1.09002 * 110.48366 * 24.25720 * 13 11 10 43 43 H 1.08999 * 113.28231 * 166.63148 * 17 16 14 44 44 H 1.09005 * 113.46950 * 332.94241 * 18 17 16 45 45 H 1.08998 * 113.47096 * 202.49885 * 18 17 16 46 46 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 47 47 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 48 48 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 49 49 H 1.09000 * 110.24341 * 136.28420 * 29 16 14 50 50 H 1.08999 * 110.25608 * 258.28598 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3590 1.2633 -0.7212 7 6 3.1384 0.9183 -2.1955 8 6 4.4668 0.8773 -2.9059 9 8 5.4893 1.1014 -2.2933 10 7 4.5186 0.5905 -4.2218 11 6 5.8100 0.5501 -4.9124 12 1 6.5121 1.2530 -4.4638 13 6 6.3902 -0.8832 -4.9192 14 6 7.0478 -1.0125 -6.2755 15 8 7.8489 -1.8706 -6.5801 16 7 6.6174 -0.0360 -7.0929 17 6 7.0633 0.1396 -8.4773 18 6 8.5719 0.3800 -8.6269 19 7 8.7469 -1.0794 -8.6767 20 6 9.7453 -1.9639 -8.3668 21 1 10.6860 -1.6021 -7.9789 22 6 9.5479 -3.3257 -8.5502 23 7 8.4012 -3.7666 -9.0224 24 14 10.9096 -4.5322 -8.1267 25 1 11.2491 -4.4099 -6.6863 26 1 10.4513 -5.9157 -8.4119 27 1 12.1109 -4.2303 -8.9459 28 6 7.3802 -1.1704 -9.2120 29 6 5.6384 0.8276 -6.4223 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.6605 2.7675 1.4423 34 1 1.2568 1.8016 1.9562 35 1 2.8829 1.0777 1.9564 36 1 3.9931 0.5052 -0.2616 37 1 3.8428 2.2370 -0.6444 38 1 2.5042 1.6763 -2.6550 39 1 2.6547 -0.0554 -2.2723 40 1 3.7008 0.4109 -4.7116 41 1 7.1251 -1.0011 -4.1229 42 1 5.5921 -1.6182 -4.8149 43 1 6.4419 0.8317 -9.0456 44 1 9.0268 0.8420 -7.7506 45 1 8.8415 0.8815 -9.5563 46 1 8.2633 -4.7181 -9.1509 47 1 7.3323 -1.0817 -10.2974 48 1 6.8218 -2.0264 -8.8335 49 1 5.8483 1.8750 -6.6395 50 1 4.6281 0.5708 -6.7406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108536652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:50 Heat of formation + Delta-G solvation = -31.179524 kcal Electronic energy + Delta-G solvation = -30086.414916 eV Core-core repulsion = 25923.986180 eV Total energy + Delta-G solvation = -4162.428737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.47905 -39.57201 -38.65973 -37.18455 -35.83367 -34.05135 -33.82420 -31.89746 -30.85252 -29.68417 -27.34402 -27.16945 -26.86612 -24.84425 -24.45549 -23.27588 -21.80286 -21.22398 -20.63704 -20.25364 -17.72461 -17.45114 -17.17599 -16.64031 -16.55066 -15.75913 -15.65005 -15.50481 -15.40887 -15.01711 -14.51038 -14.34351 -13.76354 -13.66266 -13.56303 -13.48322 -13.33906 -13.12786 -12.93054 -12.70622 -12.61445 -12.34558 -12.22063 -11.89039 -11.71805 -11.66327 -11.44087 -11.25431 -11.10495 -10.97878 -10.84599 -10.61170 -10.52173 -10.10400 -9.93680 -9.89466 -9.77401 -9.34913 -9.18755 -8.68123 -8.29075 -7.80354 -6.51954 -5.43277 -2.70574 2.49126 2.88705 3.38360 3.57048 3.57715 3.61779 3.63386 3.66451 4.32781 4.41528 4.53660 4.64393 4.71713 4.78876 4.82807 4.87602 4.93228 4.95838 5.04586 5.13185 5.22691 5.24138 5.31465 5.32546 5.40826 5.49854 5.50667 5.55644 5.68981 5.75888 5.76531 5.80649 5.92970 5.97247 6.02328 6.09611 6.35143 6.40468 6.56303 6.63211 6.81625 6.98388 7.30442 7.36644 7.59095 7.82131 7.97949 8.07319 8.27764 9.25441 9.32925 10.05767 10.93465 11.76282 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002171 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.998178 B =12896.903349 C =13477.602246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.537 6.537 10 N -0.721 5.721 11 C 0.134 3.866 12 H 0.108 0.892 13 C -0.167 4.167 14 C 0.486 3.514 15 O -0.413 6.413 16 N -0.605 5.605 17 C 0.097 3.903 18 C 0.101 3.899 19 N -0.586 5.586 20 C -0.183 4.183 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.918 5.918 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.291 1.291 28 C 0.150 3.850 29 C 0.109 3.891 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.402 0.598 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.245 0.755 47 H 0.029 0.971 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 15.069 14.689 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.233 4.233 6 C -0.140 4.140 7 C -0.179 4.179 8 C 0.301 3.699 9 O -0.414 6.414 10 N -0.373 5.373 11 C 0.028 3.972 12 H 0.126 0.874 13 C -0.209 4.209 14 C 0.269 3.731 15 O -0.277 6.277 16 N -0.344 5.344 17 C -0.007 4.007 18 C -0.027 4.027 19 N -0.311 5.311 20 C -0.311 4.311 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.218 1.218 28 C 0.023 3.977 29 C -0.016 4.016 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.236 0.764 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.048 14.198 14.949 28.069 hybrid contribution -0.054 -0.467 -0.058 0.474 sum -19.102 13.731 14.891 27.842 Atomic orbital electron populations 1.22783 0.81287 1.02782 0.99807 1.87963 1.19426 1.27822 1.95068 1.22210 0.94854 0.84628 0.95736 0.92116 1.22271 1.02312 1.01935 0.96757 1.21471 0.95636 1.03902 0.92947 1.21647 0.95068 1.04735 0.96407 1.20734 0.91619 0.75737 0.81762 1.90730 1.36352 1.48547 1.65723 1.45992 1.09330 1.72192 1.09834 1.21783 0.85694 0.97859 0.91836 0.87357 1.22833 1.02240 0.97110 0.98683 1.20656 0.83436 0.83087 0.85931 1.91227 1.28074 1.32008 1.76383 1.47718 1.43848 1.30625 1.12178 1.22672 0.95556 1.01201 0.81281 1.22872 0.92674 0.89258 0.97943 1.45173 1.13544 0.98920 1.73465 1.18487 0.91540 0.86192 1.34856 0.91257 1.24506 0.96755 0.96144 1.01797 1.69775 1.23017 1.12381 1.51467 0.86352 0.81293 0.80850 0.78099 1.21465 1.21957 1.21796 1.22327 0.87498 0.93702 0.94125 1.21999 0.93318 0.95661 0.90606 0.94234 0.94034 0.89658 0.91422 0.92565 0.91521 0.90047 0.89768 0.89145 0.88106 0.76353 0.88566 0.88629 0.89785 0.94596 0.94517 0.94462 0.95309 0.90505 0.90558 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.10 9.88 -35.23 -0.35 -3.45 16 3 C 0.08 0.55 2.72 -26.73 -0.07 0.48 16 4 H 0.06 0.31 7.79 -51.93 -0.40 -0.10 16 5 C -0.18 -1.06 9.53 37.16 0.35 -0.70 16 6 C -0.10 -0.80 4.21 -26.73 -0.11 -0.91 16 7 C -0.14 -0.97 5.60 -27.88 -0.16 -1.13 16 8 C 0.51 5.35 7.83 -10.99 -0.09 5.26 16 9 O -0.54 -7.89 15.62 5.55 0.09 -7.81 16 10 N -0.72 -6.50 5.15 -52.23 -0.27 -6.76 16 11 C 0.13 1.59 3.53 -66.30 -0.23 1.36 16 12 H 0.11 1.43 7.54 -51.93 -0.39 1.04 16 13 C -0.17 -2.59 6.59 -26.74 -0.18 -2.77 16 14 C 0.49 9.98 7.56 -10.86 -0.08 9.90 16 15 O -0.41 -11.12 12.47 5.56 0.07 -11.05 16 16 N -0.61 -10.41 3.18 -164.62 -0.52 -10.94 16 17 C 0.10 1.80 5.12 -67.81 -0.35 1.46 16 18 C 0.10 2.13 8.34 -8.51 -0.07 2.06 16 19 N -0.59 -15.70 2.29 -184.78 -0.42 -16.13 16 20 C -0.18 -5.51 8.93 -15.06 -0.13 -5.64 16 21 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 22 C 0.00 0.11 5.06 -17.43 -0.09 0.03 16 23 N -0.92 -28.93 11.51 55.49 0.64 -28.29 16 24 Si 0.90 24.20 29.55 -169.99 -5.02 19.18 16 25 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 C 0.15 3.63 6.41 -8.51 -0.05 3.57 16 29 C 0.11 1.25 7.08 -3.12 -0.02 1.23 16 30 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 31 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.68 7.82 -51.93 -0.41 0.27 16 40 H 0.40 2.42 8.43 -40.82 -0.34 2.07 16 41 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.10 1.40 8.08 -51.93 -0.42 0.98 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 2.13 6.58 -51.93 -0.34 1.79 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.60 7.80 -51.93 -0.40 0.20 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -38.94 401.92 -8.49 -47.43 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -8.56 Total: -3.68 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -0.19 Total: 15.43 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.58 Total: -62.12 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.19 Total: -22.31 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.02 Total: 19.18 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.94 -8.49 -47.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108536652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.252 kcal (2) G-P(sol) polarization free energy of solvation -38.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds