Wall clock time and date at job start Tue Mar 31 2020 22:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99880 * 2 1 4 4 H 1.09000 * 109.46977 * 329.99405 * 3 2 1 5 5 C 1.52998 * 109.47375 * 89.99731 * 3 2 1 6 6 C 1.53004 * 109.46863 * 209.99693 * 3 2 1 7 7 C 1.53005 * 109.47227 * 64.99706 * 6 3 2 8 8 C 1.50696 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.85392 * 328.79501 * 11 10 8 13 13 C 1.54626 * 111.00103 * 92.60480 * 11 10 8 14 14 C 1.51291 * 104.25547 * 142.71383 * 13 11 10 15 15 O 1.21280 * 124.94051 * 164.01255 * 14 13 11 16 16 N 1.34415 * 110.11361 * 344.14971 * 14 13 11 17 17 C 1.46502 * 124.34954 * 179.43943 * 16 14 13 18 18 C 1.53495 * 114.20341 * 299.69621 * 17 16 14 19 19 N 1.47066 * 87.98658 * 87.71675 * 18 17 16 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 17 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 17 29 29 C 1.46761 * 111.30076 * 359.16442 * 16 14 13 30 30 H 1.08997 * 109.47406 * 300.00272 * 1 2 3 31 31 H 1.08997 * 109.46875 * 60.00915 * 1 2 3 32 32 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46673 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46943 * 299.99851 * 5 3 2 35 35 H 1.09000 * 109.47334 * 59.99892 * 5 3 2 36 36 H 1.08996 * 109.46854 * 304.99801 * 6 3 2 37 37 H 1.08998 * 109.47246 * 184.99536 * 6 3 2 38 38 H 1.09000 * 109.46868 * 59.99554 * 7 6 3 39 39 H 1.08998 * 109.46868 * 300.00061 * 7 6 3 40 40 H 0.97004 * 119.99987 * 0.02562 * 10 8 7 41 41 H 1.08997 * 110.49066 * 261.61532 * 13 11 10 42 42 H 1.09002 * 110.48366 * 24.25720 * 13 11 10 43 43 H 1.08999 * 113.28231 * 166.63148 * 17 16 14 44 44 H 1.09005 * 113.46950 * 332.94241 * 18 17 16 45 45 H 1.08998 * 113.47096 * 202.49885 * 18 17 16 46 46 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 47 47 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 48 48 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 49 49 H 1.09000 * 110.24341 * 136.28420 * 29 16 14 50 50 H 1.08999 * 110.25608 * 258.28598 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3590 1.2633 -0.7212 7 6 3.1384 0.9183 -2.1955 8 6 4.4668 0.8773 -2.9059 9 8 5.4893 1.1014 -2.2933 10 7 4.5186 0.5905 -4.2218 11 6 5.8100 0.5501 -4.9124 12 1 6.5121 1.2530 -4.4638 13 6 6.3902 -0.8832 -4.9192 14 6 7.0478 -1.0125 -6.2755 15 8 7.8489 -1.8706 -6.5801 16 7 6.6174 -0.0360 -7.0929 17 6 7.0633 0.1396 -8.4773 18 6 8.5719 0.3800 -8.6269 19 7 8.7469 -1.0794 -8.6767 20 6 9.7453 -1.9639 -8.3668 21 1 10.6860 -1.6021 -7.9789 22 6 9.5479 -3.3257 -8.5502 23 7 8.4012 -3.7666 -9.0224 24 14 10.9096 -4.5322 -8.1267 25 1 11.2491 -4.4099 -6.6863 26 1 10.4513 -5.9157 -8.4119 27 1 12.1109 -4.2303 -8.9459 28 6 7.3802 -1.1704 -9.2120 29 6 5.6384 0.8276 -6.4223 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.6605 2.7675 1.4423 34 1 1.2568 1.8016 1.9562 35 1 2.8829 1.0777 1.9564 36 1 3.9931 0.5052 -0.2616 37 1 3.8428 2.2370 -0.6444 38 1 2.5042 1.6763 -2.6550 39 1 2.6547 -0.0554 -2.2723 40 1 3.7008 0.4109 -4.7116 41 1 7.1251 -1.0011 -4.1229 42 1 5.5921 -1.6182 -4.8149 43 1 6.4419 0.8317 -9.0456 44 1 9.0268 0.8420 -7.7506 45 1 8.8415 0.8815 -9.5563 46 1 8.2633 -4.7181 -9.1509 47 1 7.3323 -1.0817 -10.2974 48 1 6.8218 -2.0264 -8.8335 49 1 5.8483 1.8750 -6.6395 50 1 4.6281 0.5708 -6.7406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108536652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:49 Heat of formation + Delta-G solvation = -60.682187 kcal Electronic energy + Delta-G solvation = -30087.694248 eV Core-core repulsion = 25923.986180 eV Total energy + Delta-G solvation = -4163.708068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72860 -40.64801 -39.26199 -38.75558 -37.29167 -35.05473 -34.64331 -33.93441 -31.77730 -30.74554 -29.17905 -28.20386 -27.48059 -26.27359 -25.59069 -25.09089 -22.65819 -22.12397 -21.92080 -21.33596 -19.28626 -18.65505 -18.22495 -17.74024 -17.55286 -17.14559 -16.82388 -16.56749 -16.24926 -16.01802 -15.87475 -15.65792 -15.36026 -15.15539 -14.61529 -14.54530 -14.40797 -14.17270 -14.05686 -13.80474 -13.70213 -13.34319 -13.21564 -13.15175 -12.87690 -12.75643 -12.73543 -12.53264 -12.37403 -12.18588 -12.16977 -11.99234 -11.85487 -11.72205 -11.48939 -11.19311 -10.93385 -10.78314 -10.49258 -10.40380 -9.90193 -9.30456 -8.61361 -7.71141 -4.95616 1.38695 1.44434 1.47847 1.67585 1.99382 2.03627 2.37571 2.56574 2.94364 3.46025 3.52876 3.55536 3.67022 3.78310 3.85300 3.86638 4.04830 4.08988 4.17509 4.28877 4.41360 4.50482 4.55472 4.56983 4.63692 4.64429 4.68325 4.71057 4.75652 4.82832 4.84752 4.88090 4.95191 4.95543 4.97555 5.02943 5.12719 5.25410 5.26752 5.36124 5.37128 5.49543 5.62352 6.07208 6.17835 6.38525 6.52952 6.59932 7.07770 7.31758 7.72281 7.83168 8.80140 9.48052 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002171 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.998178 B =12896.903349 C =13477.602246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.176 4.176 6 C -0.102 4.102 7 C -0.128 4.128 8 C 0.513 3.487 9 O -0.586 6.586 10 N -0.704 5.704 11 C 0.150 3.850 12 H 0.097 0.903 13 C -0.158 4.158 14 C 0.473 3.527 15 O -0.492 6.492 16 N -0.605 5.605 17 C 0.130 3.870 18 C 0.099 3.901 19 N -0.618 5.618 20 C -0.181 4.181 21 H 0.059 0.941 22 C -0.055 4.055 23 N -0.944 5.944 24 Si 0.956 3.044 25 H -0.294 1.294 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.144 3.856 29 C 0.112 3.888 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.421 0.579 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.146 0.854 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.235 0.765 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.110 0.890 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.502 18.119 14.550 33.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.028 3.972 4 H 0.103 0.897 5 C -0.234 4.234 6 C -0.140 4.140 7 C -0.168 4.168 8 C 0.301 3.699 9 O -0.465 6.465 10 N -0.357 5.357 11 C 0.043 3.957 12 H 0.115 0.885 13 C -0.200 4.200 14 C 0.258 3.742 15 O -0.362 6.362 16 N -0.341 5.341 17 C 0.025 3.975 18 C -0.028 4.028 19 N -0.344 5.344 20 C -0.310 4.310 21 H 0.076 0.924 22 C -0.247 4.247 23 N -0.595 5.595 24 Si 0.787 3.213 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.204 1.204 28 C 0.018 3.982 29 C -0.010 4.010 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.260 0.740 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.164 0.836 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.128 0.872 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.039 17.333 14.801 31.705 hybrid contribution 0.808 -1.320 0.054 1.548 sum -21.231 16.013 14.855 30.460 Atomic orbital electron populations 1.22938 0.79933 1.03401 1.00917 1.87933 1.21033 1.28718 1.95225 1.22226 0.94382 0.84695 0.95876 0.89703 1.22283 1.02440 1.01974 0.96659 1.21437 0.96055 1.02766 0.93726 1.21652 0.93361 1.06347 0.95391 1.21382 0.92231 0.74450 0.81810 1.90724 1.38297 1.50727 1.66766 1.45794 1.08985 1.71421 1.09542 1.21473 0.86742 0.94603 0.92848 0.88451 1.22718 1.01829 1.00266 0.95195 1.21450 0.82519 0.82464 0.87792 1.91184 1.31681 1.35145 1.78204 1.47862 1.44076 1.30532 1.11655 1.22428 0.95020 0.98202 0.81839 1.23111 0.94743 0.86211 0.98707 1.45432 1.13912 1.01368 1.73676 1.18647 0.91882 0.87230 1.33194 0.92351 1.25153 0.98768 0.97679 1.03104 1.69963 1.24558 1.11564 1.53399 0.85483 0.79538 0.78821 0.77451 1.22102 1.22174 1.20413 1.22325 0.86197 0.95253 0.94463 1.22348 0.93464 0.96273 0.88958 0.93572 0.92426 0.89420 0.90501 0.91727 0.93224 0.93140 0.89945 0.85458 0.87327 0.74005 0.90467 0.87739 0.83622 0.95126 0.91945 0.95603 0.95352 0.94869 0.87191 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.42 16 2 O -0.41 -5.91 9.88 -148.98 -1.47 -7.38 16 3 C 0.09 0.95 2.72 30.59 0.08 1.03 16 4 H 0.09 0.54 7.79 -2.39 -0.02 0.52 16 5 C -0.18 -1.92 9.53 71.98 0.69 -1.23 16 6 C -0.10 -1.47 4.21 30.60 0.13 -1.34 16 7 C -0.13 -1.41 5.60 29.85 0.17 -1.25 16 8 C 0.51 9.49 7.83 87.66 0.69 10.17 16 9 O -0.59 -16.87 15.62 -3.05 -0.05 -16.92 16 10 N -0.70 -10.22 5.15 -437.53 -2.25 -12.48 16 11 C 0.15 3.16 3.53 46.05 0.16 3.33 16 12 H 0.10 2.37 7.54 -2.39 -0.02 2.36 16 13 C -0.16 -4.87 6.59 30.59 0.20 -4.66 16 14 C 0.47 19.55 7.56 87.90 0.66 20.21 16 15 O -0.49 -27.72 12.47 -3.03 -0.04 -27.76 16 16 N -0.60 -19.30 3.18 -793.34 -2.52 -21.82 16 17 C 0.13 4.41 5.12 45.46 0.23 4.65 16 18 C 0.10 4.02 8.34 83.18 0.69 4.71 16 19 N -0.62 -33.61 2.29 -738.53 -1.69 -35.31 16 20 C -0.18 -11.21 8.93 84.03 0.75 -10.46 16 21 H 0.06 3.62 7.83 -2.91 -0.02 3.59 16 22 C -0.05 -3.46 5.06 84.86 0.43 -3.03 16 23 N -0.94 -62.07 11.51 21.65 0.25 -61.82 16 24 Si 0.96 51.72 29.55 68.60 2.03 53.75 16 25 H -0.29 -15.95 7.11 99.48 0.71 -15.24 16 26 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 27 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 28 C 0.14 6.97 6.41 83.18 0.53 7.50 16 29 C 0.11 2.02 7.08 86.83 0.61 2.64 16 30 H 0.05 0.31 7.87 -2.39 -0.02 0.29 16 31 H 0.06 0.28 8.08 -2.39 -0.02 0.26 16 32 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.58 7.87 -2.39 -0.02 0.56 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 37 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.11 1.11 7.82 -2.39 -0.02 1.09 16 40 H 0.42 2.99 8.43 -92.71 -0.78 2.20 16 41 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 42 H 0.10 2.99 8.08 -2.39 -0.02 2.97 16 43 H 0.15 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.23 15.26 8.31 -92.71 -0.77 14.48 16 47 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.03 1.89 6.58 -2.39 -0.02 1.87 16 49 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.10 1.22 7.80 -2.39 -0.02 1.20 16 Total: -1.00 -93.41 401.92 1.66 -91.75 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 0.15 Total: 4.29 kcal Atomic # 6 Polarization: 26.43 SS G_CDS: 7.26 Total: 33.69 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -6.22 Total: -131.42 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -1.56 Total: -52.06 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.03 Total: 53.75 kcal Total: -93.41 1.66 -91.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108536652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.064 kcal (2) G-P(sol) polarization free energy of solvation -93.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds