Wall clock time and date at job start Tue Mar 31 2020 23:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00016 * 2 1 4 4 C 1.53005 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47349 * 304.99801 * 4 3 2 6 6 C 1.53005 * 109.47015 * 64.99795 * 4 3 2 7 7 C 1.52992 * 109.47013 * 184.99454 * 4 3 2 8 8 C 1.50706 * 109.47274 * 175.00118 * 7 4 3 9 9 O 1.21281 * 119.99699 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00080 * 180.02562 * 8 7 4 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.85443 * 30.92830 * 11 10 8 13 13 C 1.54625 * 110.96602 * 267.10022 * 11 10 8 14 14 C 1.51282 * 104.19547 * 217.08040 * 13 11 10 15 15 O 1.21279 * 124.94278 * 196.21785 * 14 13 11 16 16 N 1.34415 * 110.11380 * 16.25540 * 14 13 11 17 17 C 1.46501 * 124.35020 * 180.38637 * 16 14 13 18 18 C 1.53944 * 113.74036 * 38.76432 * 17 16 14 19 19 N 1.47820 * 86.03477 * 222.08363 * 18 17 16 20 20 C 1.36933 * 134.45777 * 204.64243 * 19 18 17 21 21 H 1.07995 * 120.00184 * 179.87106 * 20 19 18 22 22 C 1.38821 * 119.99876 * 359.86587 * 20 19 18 23 23 N 1.31618 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99782 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46821 * 60.00625 * 24 22 20 26 26 H 1.48501 * 109.46568 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47184 * 300.00231 * 24 22 20 28 28 C 1.47581 * 91.04779 * 24.55027 * 19 18 17 29 29 C 1.46763 * 111.30310 * 0.40416 * 16 14 13 30 30 H 1.08996 * 109.47795 * 300.00903 * 1 2 3 31 31 H 1.09002 * 109.46625 * 60.01011 * 1 2 3 32 32 H 1.09001 * 109.47473 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47226 * 59.99735 * 3 2 1 34 34 H 1.08997 * 109.46726 * 299.99089 * 3 2 1 35 35 H 1.09000 * 109.47057 * 59.99827 * 6 4 3 36 36 H 1.09000 * 109.46867 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47183 * 299.99692 * 6 4 3 38 38 H 1.09004 * 109.47116 * 55.00469 * 7 4 3 39 39 H 1.08998 * 109.47794 * 295.00381 * 7 4 3 40 40 H 0.97005 * 120.00161 * 359.72088 * 10 8 7 41 41 H 1.08999 * 110.49132 * 335.76329 * 13 11 10 42 42 H 1.09003 * 110.48723 * 98.40488 * 13 11 10 43 43 H 1.09005 * 112.94726 * 170.35403 * 17 16 14 44 44 H 1.08992 * 113.77103 * 336.34550 * 18 17 16 45 45 H 1.08999 * 113.77175 * 107.75142 * 18 17 16 46 46 H 0.97005 * 119.99305 * 179.97438 * 23 22 20 47 47 H 1.09006 * 113.76311 * 221.14969 * 28 19 18 48 48 H 1.09001 * 113.77174 * 89.75680 * 28 19 18 49 49 H 1.09005 * 110.24777 * 223.98597 * 29 16 14 50 50 H 1.09001 * 110.24142 * 101.98382 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1572 2.5768 0.1262 8 6 5.6537 2.4493 0.2504 9 8 6.1719 1.3528 0.2390 10 7 6.4162 3.5537 0.3740 11 6 7.8711 3.4298 0.4941 12 1 8.2318 2.5546 -0.0461 13 6 8.3015 3.3812 1.9784 14 6 9.5988 4.1587 2.0142 15 8 10.4030 4.1268 2.9214 16 7 9.7299 4.8907 0.8945 17 6 10.8757 5.7555 0.6016 18 6 12.2269 5.1644 1.0427 19 7 12.5500 6.5255 1.5201 20 6 13.7132 7.2137 1.7405 21 1 13.6787 8.2311 2.1009 22 6 14.9368 6.6034 1.5006 23 7 14.9788 5.3636 1.0609 24 14 16.5235 7.5424 1.8005 25 1 16.5976 7.9460 3.2276 26 1 17.6823 6.6744 1.4702 27 1 16.5520 8.7534 0.9414 28 6 11.1163 6.8455 1.6616 29 6 8.5776 4.7127 0.0031 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8462 -0.8901 35 1 3.6809 1.1524 -2.1485 36 1 5.0828 0.4498 -1.3057 37 1 3.5532 -0.4556 -1.3959 38 1 3.7603 3.0735 1.0116 39 1 3.9149 3.1643 -0.7593 40 1 6.0021 4.4310 0.3790 41 1 7.5523 3.8600 2.6089 42 1 8.4655 2.3510 2.2946 43 1 10.8740 6.1311 -0.4217 44 1 12.1443 4.4270 1.8410 45 1 12.8509 4.8285 0.2145 46 1 15.8338 4.9373 0.8929 47 1 10.8552 7.8494 1.3266 48 1 10.7067 6.6030 2.6422 49 1 8.9130 4.5881 -1.0266 50 1 7.9052 5.5670 0.0808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108583764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:50 Heat of formation + Delta-G solvation = -53.616208 kcal Electronic energy + Delta-G solvation = -29384.618849 eV Core-core repulsion = 25221.217185 eV Total energy + Delta-G solvation = -4163.401664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80746 -39.87521 -38.46565 -37.27794 -36.47621 -35.01015 -34.15195 -32.19208 -30.56905 -28.59775 -27.68330 -27.49776 -26.84827 -25.79308 -24.72953 -23.42488 -22.25140 -21.16049 -20.56316 -20.19388 -18.33728 -17.76658 -17.01863 -16.76223 -16.52831 -16.45429 -16.11174 -15.75975 -15.46791 -15.22597 -14.90067 -14.48757 -14.20432 -14.03669 -13.73305 -13.55411 -13.49498 -13.37911 -13.24951 -12.65111 -12.58268 -12.43048 -12.07219 -11.95161 -11.81294 -11.55930 -11.46842 -11.41857 -11.29089 -11.17876 -11.05254 -10.82621 -10.69855 -10.18444 -10.12790 -10.10086 -9.98688 -9.64881 -9.48001 -9.13933 -8.65343 -8.19034 -6.80550 -5.70723 -3.02861 2.30677 2.62322 2.92564 3.26292 3.40463 3.43767 3.48239 3.49508 4.18145 4.30591 4.42053 4.47696 4.52599 4.57816 4.73644 4.82571 4.84539 4.87921 4.92516 4.95305 4.97343 5.09239 5.22414 5.23532 5.32993 5.35944 5.41365 5.47906 5.54147 5.61702 5.65746 5.75593 5.82739 5.83742 5.94631 6.09315 6.22838 6.28975 6.51884 6.58228 6.71580 6.87741 7.12321 7.30306 7.49251 7.59805 7.63844 7.90283 8.02470 8.55208 9.09634 9.75985 10.65047 11.46437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.045145 B = 0.001693 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.072222 B =16535.287709 C =16594.843900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.065 3.935 4 C -0.076 4.076 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.136 4.136 8 C 0.517 3.483 9 O -0.527 6.527 10 N -0.722 5.722 11 C 0.134 3.866 12 H 0.114 0.886 13 C -0.167 4.167 14 C 0.515 3.485 15 O -0.507 6.507 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.112 3.888 29 C 0.099 3.901 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.403 0.597 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.254 0.746 47 H 0.042 0.958 48 H 0.040 0.960 49 H 0.085 0.915 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.470 -5.486 -6.347 32.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.012 4.012 4 C -0.094 4.094 5 H 0.107 0.893 6 C -0.207 4.207 7 C -0.176 4.176 8 C 0.304 3.696 9 O -0.402 6.402 10 N -0.374 5.374 11 C 0.028 3.972 12 H 0.132 0.868 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.382 6.382 16 N -0.341 5.341 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 C -0.015 4.015 29 C -0.026 4.026 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.238 0.762 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -30.102 -6.380 -5.886 31.329 hybrid contribution 0.323 1.277 0.246 1.340 sum -29.779 -5.103 -5.640 30.735 Atomic orbital electron populations 1.22743 0.81044 1.02844 0.99901 1.87896 1.19573 1.27802 1.95372 1.22597 0.93703 0.84805 1.00068 1.20832 0.92057 0.95185 1.01370 0.89334 1.21897 1.03172 1.00712 0.94911 1.21652 0.92021 0.99351 1.04592 1.20573 0.89299 0.84201 0.75568 1.90725 1.74794 1.26076 1.48641 1.45964 1.06584 1.09519 1.75375 1.21816 0.79952 0.99498 0.95950 0.86794 1.22824 0.97226 1.03164 0.97629 1.20603 0.87323 0.79874 0.82114 1.90794 1.46121 1.64459 1.36780 1.48505 1.20298 1.45849 1.19482 1.24085 0.84752 0.92203 0.99403 1.22784 0.87354 0.89072 0.98093 1.45692 0.99197 1.11293 1.76892 1.18936 0.82163 0.95421 1.38479 0.90260 1.24800 0.97448 0.96332 1.01793 1.69821 1.24421 1.11818 1.50514 0.86181 0.82890 0.78567 0.77991 1.21178 1.21539 1.21098 1.22913 0.86956 0.95566 0.96085 1.22209 0.88575 0.96299 0.95520 0.94096 0.94118 0.89592 0.93306 0.93215 0.93552 0.90555 0.92108 0.88562 0.88487 0.76241 0.87954 0.87832 0.87635 0.92647 0.91099 0.93582 0.94017 0.94282 0.89669 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.14 10.24 -35.23 -0.36 -3.50 16 3 C 0.06 0.39 5.32 37.16 0.20 0.58 16 4 C -0.08 -0.53 2.27 -90.62 -0.21 -0.74 16 5 H 0.09 0.81 7.96 -51.93 -0.41 0.39 16 6 C -0.15 -1.23 8.83 37.16 0.33 -0.90 16 7 C -0.14 -0.66 5.17 -27.88 -0.14 -0.81 16 8 C 0.52 4.15 7.55 -10.98 -0.08 4.07 16 9 O -0.53 -6.45 13.60 5.56 0.08 -6.37 16 10 N -0.72 -4.66 5.15 -52.23 -0.27 -4.93 16 11 C 0.13 1.24 3.53 -66.30 -0.23 1.01 16 12 H 0.11 1.22 7.53 -51.93 -0.39 0.83 16 13 C -0.17 -1.96 6.59 -26.74 -0.18 -2.14 16 14 C 0.51 8.70 7.42 -10.86 -0.08 8.62 16 15 O -0.51 -11.37 14.60 5.56 0.08 -11.29 16 16 N -0.61 -9.22 3.15 -166.64 -0.53 -9.74 16 17 C 0.10 1.86 4.81 -70.15 -0.34 1.53 16 18 C 0.15 3.85 6.90 -2.83 -0.02 3.83 16 19 N -0.60 -16.36 3.70 -177.87 -0.66 -17.02 16 20 C -0.22 -6.50 10.70 -15.06 -0.16 -6.66 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -28.32 11.39 55.49 0.63 -27.69 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.11 2.43 8.43 -2.97 -0.03 2.41 16 29 C 0.10 0.95 7.08 -3.12 -0.02 0.93 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 37 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.40 1.38 8.43 -40.82 -0.34 1.03 16 41 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 44 H 0.06 1.54 5.75 -51.93 -0.30 1.24 16 45 H 0.07 1.93 7.16 -51.93 -0.37 1.55 16 46 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.04 0.90 7.22 -51.93 -0.37 0.53 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.52 7.80 -51.93 -0.40 0.11 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -38.15 401.37 -8.30 -46.46 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.35 Total: -2.41 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 0.05 Total: 12.68 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.82 Total: -59.38 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.20 Total: -21.16 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.15 -8.30 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108583764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.161 kcal (2) G-P(sol) polarization free energy of solvation -38.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds