Wall clock time and date at job start Tue Mar 31 2020 23:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00271 * 2 1 4 4 C 1.52998 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46834 * 55.00489 * 4 3 2 6 6 C 1.52998 * 109.47156 * 295.00236 * 4 3 2 7 7 C 1.53004 * 109.46954 * 174.99882 * 4 3 2 8 8 C 1.50697 * 109.46860 * 185.00115 * 7 4 3 9 9 O 1.21279 * 120.00336 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99568 * 180.02562 * 8 7 4 11 11 C 1.46500 * 119.99660 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.86162 * 31.21058 * 11 10 8 13 13 C 1.54625 * 110.97258 * 267.37561 * 11 10 8 14 14 C 1.51287 * 104.25868 * 266.46602 * 13 11 10 15 15 O 1.21278 * 124.94364 * 164.00691 * 14 13 11 16 16 N 1.34415 * 110.11157 * 344.14071 * 14 13 11 17 17 C 1.46503 * 124.34768 * 179.43608 * 16 14 13 18 18 C 1.53947 * 113.74146 * 320.96468 * 17 16 14 19 19 N 1.47809 * 86.03580 * 90.88098 * 18 17 16 20 20 C 1.36935 * 134.45373 * 204.64193 * 19 18 17 21 21 H 1.08002 * 120.00390 * 172.62180 * 20 19 18 22 22 C 1.38813 * 119.99974 * 352.62084 * 20 19 18 23 23 N 1.31614 * 120.00421 * 353.36635 * 22 20 19 24 24 Si 1.86809 * 120.00035 * 173.36727 * 22 20 19 25 25 H 1.48500 * 109.46973 * 94.01450 * 24 22 20 26 26 H 1.48500 * 109.47017 * 214.01502 * 24 22 20 27 27 H 1.48499 * 109.46841 * 334.01387 * 24 22 20 28 28 C 1.47572 * 91.05350 * 24.54864 * 19 18 17 29 29 C 1.46758 * 111.30272 * 359.17272 * 16 14 13 30 30 H 1.09003 * 109.46800 * 59.99705 * 1 2 3 31 31 H 1.08995 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47012 * 299.99919 * 1 2 3 33 33 H 1.09005 * 109.46718 * 59.99742 * 3 2 1 34 34 H 1.09000 * 109.46851 * 300.00100 * 3 2 1 35 35 H 1.08995 * 109.46979 * 60.00248 * 6 4 3 36 36 H 1.09007 * 109.46813 * 179.97438 * 6 4 3 37 37 H 1.08999 * 109.46984 * 299.99768 * 6 4 3 38 38 H 1.09002 * 109.46658 * 65.00076 * 7 4 3 39 39 H 1.08995 * 109.47189 * 305.00416 * 7 4 3 40 40 H 0.96994 * 120.00048 * 359.97438 * 10 8 7 41 41 H 1.09004 * 110.48373 * 25.35953 * 13 11 10 42 42 H 1.08992 * 110.48808 * 148.00233 * 13 11 10 43 43 H 1.09000 * 112.94296 * 189.36854 * 17 16 14 44 44 H 1.08996 * 113.76619 * 205.14803 * 18 17 16 45 45 H 1.09005 * 113.76893 * 336.53909 * 18 17 16 46 46 H 0.96998 * 120.00502 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.77013 * 221.15210 * 28 19 18 48 48 H 1.09006 * 113.77067 * 89.75363 * 28 19 18 49 49 H 1.09010 * 110.24725 * 136.27620 * 29 16 14 50 50 H 1.08999 * 110.24770 * 258.28146 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5682 -0.8410 6 6 3.9952 0.5368 1.3082 7 6 4.1574 2.5769 -0.1251 8 6 5.6539 2.4493 -0.2480 9 8 6.1720 1.3528 -0.2367 10 7 6.4166 3.5538 -0.3706 11 6 7.8714 3.4297 -0.4906 12 1 8.1414 2.5031 -0.9973 13 6 8.5509 3.5217 0.8953 14 6 8.9069 4.9850 1.0393 15 8 9.2032 5.5285 2.0822 16 7 8.8443 5.5958 -0.1565 17 6 9.1180 7.0186 -0.3733 18 6 8.5790 7.9307 0.7436 19 7 9.8990 7.7534 1.3846 20 6 10.3581 7.8319 2.6723 21 1 11.3714 7.5379 2.9033 22 6 9.5212 8.2893 3.6809 23 7 8.3328 8.7698 3.3826 24 14 10.0816 8.2228 5.4617 25 1 10.6931 9.5230 5.8370 26 1 8.9137 7.9536 6.3385 27 1 11.0835 7.1390 5.6251 28 6 10.5226 7.4556 0.0807 29 6 8.4725 4.6529 -1.2179 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.5522 -0.4550 1.3977 36 1 5.0819 0.4503 1.3085 37 1 3.6793 1.1533 2.1498 38 1 3.9143 3.1647 0.7601 39 1 3.7611 3.0732 -1.0109 40 1 6.0022 4.4307 -0.3800 41 1 7.8594 3.2154 1.6803 42 1 9.4524 2.9096 0.9195 43 1 8.8574 7.3532 -1.3773 44 1 8.3817 8.9524 0.4195 45 1 7.7537 7.4949 1.3068 46 1 7.7481 9.0897 4.0873 47 1 11.2463 6.6413 0.1155 48 1 10.8975 8.3376 -0.4387 49 1 7.7300 5.1016 -1.8780 50 1 9.3545 4.3579 -1.7864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108583766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:57 Heat of formation + Delta-G solvation = -36.965688 kcal Electronic energy + Delta-G solvation = -30516.071144 eV Core-core repulsion = 26353.391500 eV Total energy + Delta-G solvation = -4162.679644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.62464 -39.61729 -38.32752 -37.13055 -35.98156 -34.83116 -33.72476 -31.93235 -30.29130 -28.35620 -27.51081 -27.36134 -26.76230 -25.67304 -24.74656 -23.29430 -22.10580 -20.88922 -20.39635 -20.09252 -17.78576 -17.52355 -16.97018 -16.63350 -16.36377 -16.30794 -15.89276 -15.52052 -15.27656 -14.86307 -14.64764 -14.27503 -14.20822 -13.72288 -13.65238 -13.39103 -13.30876 -13.22080 -12.69976 -12.51268 -12.44212 -12.33524 -11.97464 -11.83056 -11.68349 -11.57448 -11.30810 -11.15699 -11.14097 -11.11390 -10.91421 -10.66487 -10.47594 -10.14537 -9.98967 -9.85380 -9.69614 -9.34514 -9.33155 -8.74200 -8.39332 -7.94893 -6.57538 -5.51242 -2.76184 2.49271 2.88623 3.43911 3.48605 3.52442 3.54619 3.59620 3.62747 4.39238 4.48840 4.58111 4.64554 4.70261 4.73140 4.89825 4.96698 4.96743 5.04653 5.09466 5.14000 5.21299 5.27601 5.29115 5.32904 5.47084 5.52421 5.53606 5.63544 5.67345 5.73592 5.76916 5.94675 5.96779 6.00153 6.09418 6.28384 6.33736 6.41829 6.54129 6.59316 6.83219 6.92419 7.26909 7.34346 7.52584 7.73496 7.86456 8.08905 8.21349 9.10738 9.28800 9.99830 10.83834 11.69317 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.002555 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.289877 B =10954.953366 C =11897.848793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.064 3.936 4 C -0.073 4.073 5 H 0.087 0.913 6 C -0.150 4.150 7 C -0.139 4.139 8 C 0.519 3.481 9 O -0.534 6.534 10 N -0.720 5.720 11 C 0.134 3.866 12 H 0.112 0.888 13 C -0.168 4.168 14 C 0.490 3.510 15 O -0.432 6.432 16 N -0.609 5.609 17 C 0.102 3.898 18 C 0.166 3.834 19 N -0.587 5.587 20 C -0.176 4.176 21 H 0.069 0.931 22 C -0.006 4.006 23 N -0.929 5.929 24 Si 0.903 3.097 25 H -0.295 1.295 26 H -0.294 1.294 27 H -0.284 1.284 28 C 0.103 3.897 29 C 0.103 3.897 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.404 0.596 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.246 0.754 47 H 0.040 0.960 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 -13.929 -14.438 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.092 4.092 5 H 0.105 0.895 6 C -0.208 4.208 7 C -0.179 4.179 8 C 0.306 3.694 9 O -0.411 6.411 10 N -0.372 5.372 11 C 0.029 3.971 12 H 0.130 0.870 13 C -0.210 4.210 14 C 0.274 3.726 15 O -0.298 6.298 16 N -0.347 5.347 17 C -0.002 4.002 18 C 0.039 3.961 19 N -0.312 5.312 20 C -0.304 4.304 21 H 0.087 0.913 22 C -0.201 4.201 23 N -0.578 5.578 24 Si 0.735 3.265 25 H -0.223 1.223 26 H -0.220 1.220 27 H -0.210 1.210 28 C -0.025 4.025 29 C -0.021 4.021 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.239 0.761 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.095 0.905 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.141 -14.458 -13.457 23.185 hybrid contribution -0.206 0.809 0.927 1.247 sum -12.347 -13.649 -12.530 22.266 Atomic orbital electron populations 1.22737 0.81131 1.02730 0.99935 1.87887 1.19508 1.27906 1.95387 1.22616 0.93763 0.84696 1.00165 1.20807 0.91974 0.95181 1.01201 0.89491 1.21900 1.03172 1.00612 0.95077 1.21667 0.92212 0.99258 1.04718 1.20524 0.89264 0.84150 0.75478 1.90684 1.74986 1.26155 1.49293 1.46038 1.06809 1.09570 1.74799 1.21809 0.79773 0.99325 0.96216 0.86974 1.22834 1.02616 0.97202 0.98306 1.20721 0.79340 0.88057 0.84531 1.91148 1.41749 1.68793 1.28123 1.47871 1.71185 1.07833 1.07821 1.22955 0.98672 0.79921 0.98646 1.22410 0.91657 0.93989 0.88024 1.45647 1.04021 1.81530 1.00042 1.18647 0.96587 1.33587 0.81589 0.91349 1.24535 0.96902 1.01421 0.97196 1.69789 1.09319 1.48129 1.30590 0.86223 0.77200 0.77119 0.85936 1.22315 1.22044 1.20952 1.22987 0.94109 0.96797 0.88582 1.22184 0.99699 0.89382 0.90876 0.94150 0.89669 0.94077 0.93114 0.93305 0.92202 0.90558 0.93446 0.88390 0.88633 0.76068 0.88584 0.87949 0.90149 0.94555 0.91901 0.94398 0.94225 0.94433 0.90453 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.73 10.24 -35.23 -0.36 -4.09 16 3 C 0.06 0.51 5.32 37.16 0.20 0.71 16 4 C -0.07 -0.67 2.27 -90.62 -0.21 -0.87 16 5 H 0.09 0.91 7.95 -51.93 -0.41 0.50 16 6 C -0.15 -1.60 8.83 37.16 0.33 -1.27 16 7 C -0.14 -1.08 5.17 -27.88 -0.14 -1.22 16 8 C 0.52 5.50 7.55 -10.99 -0.08 5.42 16 9 O -0.53 -7.38 13.61 5.56 0.08 -7.30 16 10 N -0.72 -7.08 5.12 -52.22 -0.27 -7.35 16 11 C 0.13 1.44 3.53 -66.30 -0.23 1.21 16 12 H 0.11 1.14 7.54 -51.93 -0.39 0.75 16 13 C -0.17 -2.38 6.58 -26.74 -0.18 -2.55 16 14 C 0.49 9.31 7.49 -10.86 -0.08 9.22 16 15 O -0.43 -11.04 13.16 5.56 0.07 -10.97 16 16 N -0.61 -9.60 3.15 -166.63 -0.53 -10.13 16 17 C 0.10 1.79 4.93 -70.15 -0.35 1.45 16 18 C 0.17 3.86 6.36 -2.84 -0.02 3.84 16 19 N -0.59 -15.33 2.17 -177.90 -0.39 -15.72 16 20 C -0.18 -5.22 8.81 -15.06 -0.13 -5.35 16 21 H 0.07 2.03 7.84 -52.49 -0.41 1.62 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.93 -28.89 11.75 55.49 0.65 -28.24 16 24 Si 0.90 24.08 29.56 -169.99 -5.02 19.06 16 25 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 26 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.28 -7.50 7.11 56.52 0.40 -7.09 16 28 C 0.10 2.11 8.50 -2.97 -0.03 2.08 16 29 C 0.10 1.07 6.97 -3.12 -0.02 1.05 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 36 H 0.08 0.96 5.95 -51.92 -0.31 0.65 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.40 3.50 8.66 -40.82 -0.35 3.14 16 41 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.66 7.30 -51.93 -0.38 1.28 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.65 8.08 -51.92 -0.42 0.23 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -38.15 400.46 -8.21 -46.36 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.56 Total: -2.40 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 0.07 Total: 14.75 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.53 Total: -61.44 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.21 Total: -22.36 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.02 Total: 19.06 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.15 -8.21 -46.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108583766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.395 kcal (2) G-P(sol) polarization free energy of solvation -38.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds