Wall clock time and date at job start Tue Mar 31 2020 23:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00271 * 2 1 4 4 C 1.52998 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46834 * 55.00489 * 4 3 2 6 6 C 1.52998 * 109.47156 * 295.00236 * 4 3 2 7 7 C 1.53004 * 109.46954 * 174.99882 * 4 3 2 8 8 C 1.50697 * 109.46860 * 185.00115 * 7 4 3 9 9 O 1.21279 * 120.00336 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99568 * 180.02562 * 8 7 4 11 11 C 1.46500 * 119.99660 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.86162 * 31.21058 * 11 10 8 13 13 C 1.54625 * 110.97258 * 267.37561 * 11 10 8 14 14 C 1.51287 * 104.25868 * 266.46602 * 13 11 10 15 15 O 1.21278 * 124.94364 * 164.00691 * 14 13 11 16 16 N 1.34415 * 110.11157 * 344.14071 * 14 13 11 17 17 C 1.46503 * 124.34768 * 179.43608 * 16 14 13 18 18 C 1.53947 * 113.74146 * 320.96468 * 17 16 14 19 19 N 1.47809 * 86.03580 * 90.88098 * 18 17 16 20 20 C 1.36935 * 134.45373 * 204.64193 * 19 18 17 21 21 H 1.08002 * 120.00390 * 172.62180 * 20 19 18 22 22 C 1.38813 * 119.99974 * 352.62084 * 20 19 18 23 23 N 1.31614 * 120.00421 * 353.36635 * 22 20 19 24 24 Si 1.86809 * 120.00035 * 173.36727 * 22 20 19 25 25 H 1.48500 * 109.46973 * 94.01450 * 24 22 20 26 26 H 1.48500 * 109.47017 * 214.01502 * 24 22 20 27 27 H 1.48499 * 109.46841 * 334.01387 * 24 22 20 28 28 C 1.47572 * 91.05350 * 24.54864 * 19 18 17 29 29 C 1.46758 * 111.30272 * 359.17272 * 16 14 13 30 30 H 1.09003 * 109.46800 * 59.99705 * 1 2 3 31 31 H 1.08995 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47012 * 299.99919 * 1 2 3 33 33 H 1.09005 * 109.46718 * 59.99742 * 3 2 1 34 34 H 1.09000 * 109.46851 * 300.00100 * 3 2 1 35 35 H 1.08995 * 109.46979 * 60.00248 * 6 4 3 36 36 H 1.09007 * 109.46813 * 179.97438 * 6 4 3 37 37 H 1.08999 * 109.46984 * 299.99768 * 6 4 3 38 38 H 1.09002 * 109.46658 * 65.00076 * 7 4 3 39 39 H 1.08995 * 109.47189 * 305.00416 * 7 4 3 40 40 H 0.96994 * 120.00048 * 359.97438 * 10 8 7 41 41 H 1.09004 * 110.48373 * 25.35953 * 13 11 10 42 42 H 1.08992 * 110.48808 * 148.00233 * 13 11 10 43 43 H 1.09000 * 112.94296 * 189.36854 * 17 16 14 44 44 H 1.08996 * 113.76619 * 205.14803 * 18 17 16 45 45 H 1.09005 * 113.76893 * 336.53909 * 18 17 16 46 46 H 0.96998 * 120.00502 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.77013 * 221.15210 * 28 19 18 48 48 H 1.09006 * 113.77067 * 89.75363 * 28 19 18 49 49 H 1.09010 * 110.24725 * 136.27620 * 29 16 14 50 50 H 1.08999 * 110.24770 * 258.28146 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5682 -0.8410 6 6 3.9952 0.5368 1.3082 7 6 4.1574 2.5769 -0.1251 8 6 5.6539 2.4493 -0.2480 9 8 6.1720 1.3528 -0.2367 10 7 6.4166 3.5538 -0.3706 11 6 7.8714 3.4297 -0.4906 12 1 8.1414 2.5031 -0.9973 13 6 8.5509 3.5217 0.8953 14 6 8.9069 4.9850 1.0393 15 8 9.2032 5.5285 2.0822 16 7 8.8443 5.5958 -0.1565 17 6 9.1180 7.0186 -0.3733 18 6 8.5790 7.9307 0.7436 19 7 9.8990 7.7534 1.3846 20 6 10.3581 7.8319 2.6723 21 1 11.3714 7.5379 2.9033 22 6 9.5212 8.2893 3.6809 23 7 8.3328 8.7698 3.3826 24 14 10.0816 8.2228 5.4617 25 1 10.6931 9.5230 5.8370 26 1 8.9137 7.9536 6.3385 27 1 11.0835 7.1390 5.6251 28 6 10.5226 7.4556 0.0807 29 6 8.4725 4.6529 -1.2179 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.5522 -0.4550 1.3977 36 1 5.0819 0.4503 1.3085 37 1 3.6793 1.1533 2.1498 38 1 3.9143 3.1647 0.7601 39 1 3.7611 3.0732 -1.0109 40 1 6.0022 4.4307 -0.3800 41 1 7.8594 3.2154 1.6803 42 1 9.4524 2.9096 0.9195 43 1 8.8574 7.3532 -1.3773 44 1 8.3817 8.9524 0.4195 45 1 7.7537 7.4949 1.3068 46 1 7.7481 9.0897 4.0873 47 1 11.2463 6.6413 0.1155 48 1 10.8975 8.3376 -0.4387 49 1 7.7300 5.1016 -1.8780 50 1 9.3545 4.3579 -1.7864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108583766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:56 Heat of formation + Delta-G solvation = -65.505900 kcal Electronic energy + Delta-G solvation = -30517.308740 eV Core-core repulsion = 26353.391500 eV Total energy + Delta-G solvation = -4163.917240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77610 -40.68718 -39.05353 -38.62477 -37.35234 -35.60290 -34.90671 -33.91953 -31.57537 -29.32765 -29.00864 -28.19447 -27.86525 -26.50626 -26.28513 -25.13651 -22.99578 -22.11530 -21.67617 -20.90525 -19.23848 -18.68820 -18.31386 -17.87441 -17.24336 -17.10838 -16.93024 -16.79391 -16.30320 -16.09537 -15.89915 -15.77636 -15.31590 -15.18132 -15.01072 -14.54389 -14.45447 -14.14238 -14.05832 -13.88870 -13.39242 -13.26915 -13.10607 -13.05406 -12.91716 -12.79195 -12.64592 -12.52158 -12.43754 -12.38932 -12.05910 -11.98684 -11.83484 -11.63815 -11.58049 -11.38514 -10.75862 -10.73528 -10.56233 -10.40604 -9.94571 -9.34909 -8.64156 -7.76905 -4.98602 1.37980 1.41476 1.48967 1.67748 1.97828 2.14543 2.23500 2.55479 2.93829 3.42617 3.47823 3.52313 3.64739 3.73561 3.90041 3.92552 3.98323 4.10083 4.24515 4.29846 4.47722 4.50179 4.51602 4.52922 4.61622 4.64815 4.68947 4.70539 4.75040 4.75192 4.83809 4.87831 4.88598 4.93622 4.96719 4.97870 5.13213 5.27725 5.29964 5.34451 5.41669 5.56130 5.59759 6.04958 6.12969 6.29019 6.51476 6.56890 7.07417 7.29474 7.68630 7.79739 8.72774 9.43292 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.002555 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.289877 B =10954.953366 C =11897.848793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.065 3.935 4 C -0.070 4.070 5 H 0.071 0.929 6 C -0.147 4.147 7 C -0.132 4.132 8 C 0.517 3.483 9 O -0.570 6.570 10 N -0.715 5.715 11 C 0.146 3.854 12 H 0.127 0.873 13 C -0.159 4.159 14 C 0.479 3.521 15 O -0.512 6.512 16 N -0.605 5.605 17 C 0.136 3.864 18 C 0.161 3.839 19 N -0.618 5.618 20 C -0.169 4.169 21 H 0.055 0.945 22 C -0.066 4.066 23 N -0.956 5.956 24 Si 0.956 3.044 25 H -0.286 1.286 26 H -0.300 1.300 27 H -0.284 1.284 28 C 0.100 3.900 29 C 0.106 3.894 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.413 0.587 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.030 0.970 45 H 0.022 0.978 46 H 0.238 0.762 47 H 0.036 0.964 48 H 0.061 0.939 49 H 0.113 0.887 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 -14.246 -17.662 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.011 4.011 4 C -0.089 4.089 5 H 0.089 0.911 6 C -0.204 4.204 7 C -0.172 4.172 8 C 0.305 3.695 9 O -0.449 6.449 10 N -0.367 5.367 11 C 0.040 3.960 12 H 0.145 0.855 13 C -0.201 4.201 14 C 0.265 3.735 15 O -0.385 6.385 16 N -0.341 5.341 17 C 0.032 3.968 18 C 0.035 3.965 19 N -0.343 5.343 20 C -0.299 4.299 21 H 0.073 0.927 22 C -0.257 4.257 23 N -0.608 5.608 24 Si 0.787 3.213 25 H -0.214 1.214 26 H -0.227 1.227 27 H -0.210 1.210 28 C -0.026 4.026 29 C -0.016 4.016 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.249 0.751 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.159 0.841 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.079 0.921 49 H 0.131 0.869 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.902 -14.787 -16.773 25.816 hybrid contribution 0.062 0.812 1.854 2.025 sum -12.840 -13.975 -14.919 24.140 Atomic orbital electron populations 1.22897 0.79665 1.03595 1.00862 1.87847 1.21242 1.28964 1.95610 1.22646 0.92574 0.84448 1.01475 1.20752 0.93190 0.95608 0.99348 0.91067 1.21839 1.01536 1.00552 0.96517 1.21681 0.90060 0.98729 1.06725 1.21012 0.90406 0.83619 0.74451 1.90680 1.75811 1.27520 1.50867 1.46027 1.06465 1.09900 1.74285 1.21766 0.80057 1.00427 0.93735 0.85527 1.22756 1.03164 0.93919 1.00276 1.21496 0.77875 0.89787 0.84301 1.91102 1.45459 1.70861 1.31064 1.47978 1.69695 1.07851 1.08561 1.22594 0.95095 0.79933 0.99218 1.22362 0.89582 0.94843 0.89718 1.45961 1.06310 1.81412 1.00657 1.18785 0.95836 1.31321 0.83960 0.92673 1.25151 0.97422 1.02806 1.00347 1.69938 1.10180 1.49984 1.30724 0.85379 0.76423 0.77227 0.82273 1.21368 1.22700 1.20966 1.23233 0.95778 0.97495 0.86096 1.22547 1.01868 0.87725 0.89443 0.92880 0.88992 0.93426 0.92396 0.91267 0.93097 0.92810 0.93019 0.87363 0.85344 0.75113 0.90300 0.86868 0.84096 0.95230 0.95973 0.95339 0.94535 0.92109 0.86897 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.53 10.24 -148.98 -1.53 -9.06 16 3 C 0.06 0.91 5.32 71.98 0.38 1.29 16 4 C -0.07 -1.19 2.27 -10.79 -0.02 -1.22 16 5 H 0.07 1.45 7.95 -2.39 -0.02 1.43 16 6 C -0.15 -3.15 8.83 71.98 0.64 -2.52 16 7 C -0.13 -1.74 5.17 29.85 0.15 -1.58 16 8 C 0.52 9.95 7.55 87.66 0.66 10.61 16 9 O -0.57 -15.19 13.61 -3.02 -0.04 -15.23 16 10 N -0.71 -12.05 5.12 -437.53 -2.24 -14.29 16 11 C 0.15 2.67 3.53 46.05 0.16 2.84 16 12 H 0.13 2.12 7.54 -2.39 -0.02 2.10 16 13 C -0.16 -4.37 6.58 30.59 0.20 -4.17 16 14 C 0.48 18.06 7.49 87.90 0.66 18.72 16 15 O -0.51 -27.18 13.16 -3.02 -0.04 -27.22 16 16 N -0.61 -17.34 3.15 -799.70 -2.52 -19.86 16 17 C 0.14 4.34 4.93 46.75 0.23 4.57 16 18 C 0.16 7.49 6.36 86.44 0.55 8.04 16 19 N -0.62 -32.59 2.17 -716.74 -1.56 -34.14 16 20 C -0.17 -10.34 8.81 84.03 0.74 -9.59 16 21 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 22 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 23 N -0.96 -61.70 11.75 21.65 0.25 -61.45 16 24 Si 0.96 51.31 29.56 68.60 2.03 53.34 16 25 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 26 H -0.30 -16.22 7.11 99.48 0.71 -15.51 16 27 H -0.28 -15.00 7.11 99.48 0.71 -14.29 16 28 C 0.10 3.91 8.50 86.49 0.74 4.64 16 29 C 0.11 1.67 6.97 86.84 0.61 2.27 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 1.14 7.82 -2.39 -0.02 1.12 16 36 H 0.05 1.39 5.95 -2.38 -0.01 1.38 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.41 5.77 8.66 -92.71 -0.80 4.97 16 41 H 0.08 2.45 8.09 -2.39 -0.02 2.43 16 42 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.02 1.19 7.30 -2.38 -0.02 1.18 16 46 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 48 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.11 1.12 8.08 -2.38 -0.02 1.10 16 50 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -90.38 400.46 1.89 -88.49 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.13 Total: 7.65 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: 7.41 Total: 31.78 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.06 Total: -129.75 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -1.61 Total: -51.50 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.03 Total: 53.34 kcal Total: -90.38 1.89 -88.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108583766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.982 kcal (2) G-P(sol) polarization free energy of solvation -90.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds