Wall clock time and date at job start Tue Mar 31 2020 23:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99919 * 2 1 4 4 C 1.53005 * 109.46849 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47128 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47081 * 54.99727 * 5 4 3 7 7 C 1.53006 * 109.47020 * 295.00179 * 5 4 3 8 8 C 1.50693 * 109.47385 * 174.99965 * 5 4 3 9 9 O 1.21289 * 119.99736 * 0.02562 * 8 5 4 10 10 N 1.34767 * 120.00151 * 179.97438 * 8 5 4 11 11 C 1.46505 * 120.00117 * 180.02562 * 10 8 5 12 12 H 1.09005 * 110.85600 * 322.66037 * 11 10 8 13 13 C 1.54623 * 110.97405 * 86.45195 * 11 10 8 14 14 C 1.51282 * 104.31101 * 93.25757 * 13 11 10 15 15 O 1.21286 * 124.94199 * 196.27917 * 14 13 11 16 16 N 1.34735 * 109.93792 * 16.31290 * 14 13 11 17 17 C 1.46502 * 124.30200 * 180.39884 * 16 14 13 18 18 C 1.53943 * 113.74020 * 38.69162 * 17 16 14 19 19 N 1.47813 * 86.03588 * 222.08654 * 18 17 16 20 20 C 1.36943 * 134.45664 * 204.64613 * 19 18 17 21 21 H 1.07998 * 119.99907 * 179.86259 * 20 19 18 22 22 C 1.38812 * 119.99619 * 359.86482 * 20 19 18 23 23 N 1.31617 * 120.00442 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47082 * 89.99704 * 24 22 20 26 26 H 1.48495 * 109.47443 * 209.99973 * 24 22 20 27 27 H 1.48500 * 109.47075 * 329.99952 * 24 22 20 28 28 C 1.47578 * 91.05394 * 24.54809 * 19 18 17 29 29 C 1.46768 * 111.35098 * 0.35387 * 16 14 13 30 30 H 1.09000 * 109.46851 * 300.00401 * 1 2 3 31 31 H 1.09005 * 109.46723 * 59.99909 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47236 * 60.00377 * 3 2 1 34 34 H 1.08996 * 109.47263 * 299.99733 * 3 2 1 35 35 H 1.08994 * 109.47107 * 60.00373 * 4 3 2 36 36 H 1.08996 * 109.47074 * 299.99976 * 4 3 2 37 37 H 1.09006 * 109.46884 * 300.00086 * 7 5 4 38 38 H 1.08997 * 109.47067 * 59.99473 * 7 5 4 39 39 H 1.08991 * 109.47116 * 180.02562 * 7 5 4 40 40 H 0.96997 * 120.00232 * 0.02562 * 10 8 5 41 41 H 1.09002 * 110.48860 * 212.00231 * 13 11 10 42 42 H 1.08998 * 110.48497 * 334.51125 * 13 11 10 43 43 H 1.08998 * 112.94782 * 170.28438 * 17 16 14 44 44 H 1.09001 * 113.77137 * 336.35026 * 18 17 16 45 45 H 1.09000 * 113.77221 * 107.74934 * 18 17 16 46 46 H 0.97001 * 120.00482 * 179.97438 * 23 22 20 47 47 H 1.08999 * 113.77263 * 221.15423 * 28 19 18 48 48 H 1.08998 * 113.76636 * 89.74950 * 28 19 18 49 49 H 1.09000 * 110.24529 * 224.01554 * 29 16 14 50 50 H 1.09007 * 110.24087 * 102.01818 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 1 3.7668 3.1538 0.8430 7 6 3.8089 3.2965 -1.3061 8 6 5.6551 2.4655 0.1258 9 8 6.1735 1.3719 0.2056 10 7 6.4182 3.5761 0.1473 11 6 7.8739 3.4625 0.2678 12 1 8.1453 2.6474 0.9386 13 6 8.5314 3.2796 -1.1197 14 6 8.8898 4.6844 -1.5518 15 8 9.1662 5.0131 -2.6861 16 7 8.8569 5.5140 -0.4906 17 6 9.1443 6.9491 -0.5553 18 6 8.5938 7.6350 -1.8188 19 7 9.8838 8.3552 -1.8653 20 6 10.2984 9.5466 -2.3982 21 1 11.3271 9.8575 -2.2905 22 6 9.3965 10.3546 -3.0768 23 7 8.1430 9.9756 -3.2085 24 14 9.9622 11.9795 -3.8045 25 1 10.4330 11.7615 -5.1958 26 1 8.8301 12.9404 -3.8097 27 1 11.0733 12.5282 -2.9862 28 6 10.5445 7.2766 -1.1050 29 6 8.4955 4.7964 0.7376 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6436 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 4.2000 2.7250 -2.1479 38 1 2.7260 3.3810 -1.3961 39 1 4.2527 4.2920 -1.3058 40 1 6.0037 4.4507 0.0831 41 1 9.4280 2.6649 -1.0389 42 1 7.8258 2.8332 -1.8203 43 1 8.9023 7.4731 0.3693 44 1 8.4401 6.9547 -2.6565 45 1 7.7358 8.2801 -1.6301 46 1 7.5127 10.5404 -3.6824 47 1 11.2409 7.6360 -0.3474 48 1 10.9649 6.4908 -1.7326 49 1 7.7672 5.3712 1.3098 50 1 9.3845 4.6071 1.3393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108591103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:10 Heat of formation + Delta-G solvation = -84.983991 kcal Electronic energy + Delta-G solvation = -29971.289954 eV Core-core repulsion = 25806.528080 eV Total energy + Delta-G solvation = -4164.761873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93735 -40.79098 -39.04576 -38.79697 -37.64592 -35.83607 -35.09923 -34.09165 -31.76376 -30.08709 -29.16711 -28.33565 -27.20644 -26.60771 -25.88696 -25.19706 -23.44457 -22.20503 -22.01666 -20.85027 -19.70328 -18.79001 -18.37880 -17.99796 -17.62095 -17.19287 -16.99396 -16.95323 -16.33183 -16.15403 -15.97954 -15.73669 -15.54153 -15.09398 -14.98329 -14.71066 -14.55332 -14.21094 -14.06197 -13.92823 -13.52768 -13.42536 -13.34252 -13.20823 -12.86502 -12.75575 -12.74068 -12.63181 -12.56818 -12.40659 -12.18845 -12.02856 -11.88550 -11.87366 -11.82918 -11.52047 -11.04841 -10.79231 -10.63741 -10.54506 -10.10283 -9.54782 -8.93698 -7.92916 -5.26960 1.42933 1.46394 1.54754 1.59293 1.63977 1.98783 2.10256 2.48310 2.89905 3.25386 3.35700 3.46565 3.49313 3.64805 3.80490 3.86866 3.92407 4.02330 4.23962 4.26919 4.28071 4.34140 4.44322 4.50310 4.54280 4.57341 4.59778 4.63255 4.70525 4.77342 4.82523 4.86149 4.88452 4.89697 4.92385 4.93332 5.04897 5.21958 5.23809 5.26891 5.33041 5.47214 5.48428 5.86478 5.90381 6.27135 6.27456 6.50922 6.88836 7.22748 7.25746 7.57296 8.52992 9.24248 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.002214 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.275245 B =12644.467507 C =13821.347347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.059 3.941 4 C -0.095 4.095 5 C -0.099 4.099 6 H 0.131 0.869 7 C -0.149 4.149 8 C 0.522 3.478 9 O -0.573 6.573 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.133 0.867 13 C -0.156 4.156 14 C 0.503 3.497 15 O -0.575 6.575 16 N -0.607 5.607 17 C 0.139 3.861 18 C 0.150 3.850 19 N -0.635 5.635 20 C -0.237 4.237 21 H 0.084 0.916 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.983 3.017 25 H -0.292 1.292 26 H -0.289 1.289 27 H -0.263 1.263 28 C 0.110 3.890 29 C 0.098 3.902 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.139 0.861 44 H 0.019 0.981 45 H 0.044 0.956 46 H 0.249 0.751 47 H 0.068 0.932 48 H 0.021 0.979 49 H 0.112 0.888 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -17.217 15.321 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.017 4.017 4 C -0.133 4.133 5 C -0.120 4.120 6 H 0.149 0.851 7 C -0.207 4.207 8 C 0.309 3.691 9 O -0.452 6.452 10 N -0.366 5.366 11 C 0.039 3.961 12 H 0.150 0.850 13 C -0.197 4.197 14 C 0.292 3.708 15 O -0.455 6.455 16 N -0.340 5.340 17 C 0.035 3.965 18 C 0.024 3.976 19 N -0.362 5.362 20 C -0.365 4.365 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.220 1.220 26 H -0.215 1.215 27 H -0.187 1.187 28 C -0.016 4.016 29 C -0.024 4.024 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.250 0.750 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.157 0.843 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.039 0.961 49 H 0.130 0.870 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.539 -17.605 14.667 26.121 hybrid contribution 0.015 1.421 -1.384 1.984 sum -12.524 -16.184 13.283 24.397 Atomic orbital electron populations 1.22917 0.79468 1.03688 1.00977 1.87840 1.21510 1.29258 1.95656 1.22678 0.92941 0.84369 1.01679 1.21196 0.93456 0.95580 1.03108 1.21205 0.90206 0.98294 1.02292 0.85131 1.21893 1.03729 1.00252 0.94805 1.20960 0.90189 0.83579 0.74340 1.90710 1.75765 1.27981 1.50695 1.46046 1.06424 1.09801 1.74344 1.21854 0.79926 0.99091 0.95217 0.84954 1.22773 1.04063 0.93408 0.99466 1.21580 0.75849 0.89201 0.84166 1.90760 1.50477 1.81485 1.22739 1.48552 1.68190 1.07493 1.09766 1.23352 0.95121 0.78412 0.99607 1.22568 0.90193 0.91021 0.93803 1.46152 1.08415 1.16835 1.64798 1.19430 0.95266 0.93362 1.28480 0.89795 1.25704 0.96009 1.02839 1.01608 1.70023 1.03604 1.39066 1.47419 0.85017 0.77263 0.78669 0.77996 1.21968 1.21524 1.18745 1.23019 0.95808 0.89366 0.93412 1.22695 1.02414 0.91169 0.86108 0.92852 0.93212 0.88941 0.91453 0.91847 0.92565 0.91577 0.93414 0.89440 0.91297 0.75009 0.85404 0.89293 0.84298 0.96330 0.93720 0.94225 0.91399 0.96141 0.87003 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.53 10.70 -148.98 -1.59 -9.12 16 3 C 0.06 0.78 5.69 71.98 0.41 1.19 16 4 C -0.10 -1.55 4.40 30.60 0.13 -1.42 16 5 C -0.10 -1.26 2.72 -11.54 -0.03 -1.29 16 6 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.15 -1.88 8.85 71.98 0.64 -1.24 16 8 C 0.52 9.40 7.15 87.66 0.63 10.03 16 9 O -0.57 -14.71 15.66 -3.06 -0.05 -14.76 16 10 N -0.71 -10.58 5.05 -437.54 -2.21 -12.79 16 11 C 0.14 2.21 3.43 46.05 0.16 2.37 16 12 H 0.13 1.72 7.73 -2.38 -0.02 1.70 16 13 C -0.16 -3.50 6.57 30.59 0.20 -3.30 16 14 C 0.50 16.53 7.42 87.85 0.65 17.18 16 15 O -0.58 -26.65 14.64 -3.05 -0.04 -26.69 16 16 N -0.61 -16.42 3.16 -799.22 -2.53 -18.94 16 17 C 0.14 4.89 4.81 46.75 0.22 5.11 16 18 C 0.15 7.52 6.90 86.44 0.60 8.11 16 19 N -0.64 -34.37 3.70 -716.71 -2.65 -37.03 16 20 C -0.24 -13.88 10.70 84.03 0.90 -12.98 16 21 H 0.08 4.68 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.95 -59.28 11.39 21.65 0.25 -59.03 16 24 Si 0.98 46.92 29.55 68.60 2.03 48.94 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 28 C 0.11 4.67 8.44 86.49 0.73 5.40 16 29 C 0.10 1.39 6.96 86.83 0.60 1.99 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.69 6.57 -2.39 -0.02 0.68 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.26 7.95 -2.39 -0.02 1.24 16 37 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.80 6.57 -2.39 -0.02 0.78 16 39 H 0.07 0.85 7.56 -2.39 -0.02 0.83 16 40 H 0.41 4.99 7.99 -92.71 -0.74 4.24 16 41 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.09 2.26 8.09 -2.39 -0.02 2.24 16 43 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.02 1.08 5.75 -2.39 -0.01 1.06 16 45 H 0.04 2.42 7.17 -2.39 -0.02 2.40 16 46 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 47 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.02 0.96 7.23 -2.39 -0.02 0.95 16 49 H 0.11 1.09 8.03 -2.39 -0.02 1.07 16 50 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -87.39 402.08 0.95 -86.44 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.20 Total: 13.89 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 7.56 Total: 29.10 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -7.15 Total: -127.80 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -1.69 Total: -50.57 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -87.39 0.95 -86.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108591103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.452 kcal (2) G-P(sol) polarization free energy of solvation -87.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds