Wall clock time and date at job start Tue Mar 31 2020 23:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00297 * 2 1 4 4 H 1.09000 * 109.47179 * 330.00131 * 3 2 1 5 5 C 1.52998 * 109.47125 * 90.00231 * 3 2 1 6 6 C 1.52996 * 109.47196 * 210.00180 * 3 2 1 7 7 C 1.50698 * 109.47267 * 64.99979 * 6 3 2 8 8 O 1.21284 * 119.99988 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00056 * 180.02562 * 7 6 3 10 10 C 1.46501 * 119.99742 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.67358 * 32.04552 * 10 9 7 12 12 C 1.54844 * 110.61326 * 269.09789 * 10 9 7 13 13 C 1.55849 * 103.52006 * 241.49440 * 12 10 9 14 14 H 1.09000 * 116.15263 * 159.22533 * 13 12 10 15 15 C 1.57330 * 105.76078 * 288.80050 * 13 12 10 16 16 C 1.54838 * 103.38847 * 71.10596 * 15 13 12 17 17 C 1.55844 * 103.51715 * 0.40167 * 16 15 13 18 18 H 1.09005 * 115.58337 * 158.89457 * 17 16 15 19 19 N 1.50651 * 101.02984 * 32.99180 * 17 16 15 20 20 C 1.46901 * 110.99668 * 61.63329 * 19 17 16 21 21 C 1.50701 * 109.46921 * 169.99921 * 20 19 17 22 22 O 1.21294 * 119.99849 * 0.02562 * 21 20 19 23 23 N 1.34780 * 119.99795 * 179.97438 * 21 20 19 24 24 C 1.37101 * 119.99707 * 180.02562 * 23 21 20 25 25 H 1.08002 * 119.99704 * 359.97438 * 24 23 21 26 26 C 1.38941 * 119.99927 * 180.02562 * 24 23 21 27 27 N 1.31417 * 120.00180 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00273 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.46986 * 359.97438 * 28 26 24 30 30 H 1.48494 * 109.47457 * 119.99901 * 28 26 24 31 31 H 1.48501 * 109.47104 * 239.99973 * 28 26 24 32 32 H 1.09002 * 109.46881 * 59.99545 * 1 2 3 33 33 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46855 * 300.00181 * 1 2 3 35 35 H 1.09001 * 109.47046 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.47054 * 299.99855 * 5 3 2 37 37 H 1.08997 * 109.47473 * 60.00319 * 5 3 2 38 38 H 1.09002 * 109.47149 * 304.99748 * 6 3 2 39 39 H 1.08999 * 109.47177 * 184.99462 * 6 3 2 40 40 H 0.97000 * 120.00036 * 0.02562 * 9 7 6 41 41 H 1.08996 * 110.61145 * 122.98406 * 12 10 9 42 42 H 1.08997 * 110.61069 * 0.02562 * 12 10 9 43 43 H 1.08998 * 110.33388 * 312.80787 * 15 13 12 44 44 H 1.09002 * 111.01941 * 189.73549 * 15 13 12 45 45 H 1.08998 * 110.61130 * 241.89274 * 16 15 13 46 46 H 1.08996 * 110.74687 * 118.97206 * 16 15 13 47 47 H 1.09002 * 109.47401 * 49.99949 * 20 19 17 48 48 H 1.09001 * 109.46874 * 289.99962 * 20 19 17 49 49 H 0.96995 * 120.00011 * 0.02562 * 23 21 20 50 50 H 0.97000 * 119.99884 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1416 0.9236 -2.1733 8 8 2.0186 0.7335 -2.5902 9 7 4.1953 0.8300 -3.0085 10 6 3.9840 0.4993 -4.4200 11 1 3.0306 0.8955 -4.7695 12 6 4.0500 -1.0325 -4.6368 13 6 5.2535 -1.2110 -5.6108 14 1 5.7097 -2.2007 -5.6344 15 6 4.7649 -0.6569 -6.9999 16 6 4.6952 0.8729 -6.7711 17 6 5.1564 1.0415 -5.2920 18 1 5.5236 2.0321 -5.0234 19 7 6.1506 -0.0838 -5.1701 20 6 7.2677 0.0970 -6.1068 21 6 8.3536 -0.8993 -5.7917 22 8 8.2107 -1.6832 -4.8771 23 7 9.4831 -0.9200 -6.5268 24 6 10.4708 -1.8267 -6.2405 25 1 10.3439 -2.5241 -5.4256 26 6 11.6354 -1.8477 -6.9979 27 7 11.7900 -0.9988 -7.9891 28 14 12.9809 -3.0836 -6.6084 29 1 12.5648 -3.9211 -5.4548 30 1 13.2144 -3.9504 -7.7912 31 1 14.2332 -2.3614 -6.2689 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 2.6608 2.7673 1.4425 36 1 1.2569 1.8015 1.9564 37 1 2.8830 1.0775 1.9563 38 1 3.9931 0.5051 -0.2618 39 1 3.8427 2.2369 -0.6444 40 1 5.0935 0.9809 -2.6749 41 1 3.1294 -1.3954 -5.0937 42 1 4.2395 -1.5456 -3.6940 43 1 3.7789 -1.0541 -7.2405 44 1 5.4786 -0.8948 -7.7886 45 1 3.6746 1.2338 -6.8984 46 1 5.3728 1.3955 -7.4462 47 1 7.6631 1.1081 -6.0099 48 1 6.9158 -0.0594 -7.1265 49 1 9.5972 -0.2934 -7.2584 50 1 12.6029 -1.0138 -8.5181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110376108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:40 Heat of formation + Delta-G solvation = -119.515346 kcal Electronic energy + Delta-G solvation = -30264.323007 eV Core-core repulsion = 26098.063742 eV Total energy + Delta-G solvation = -4166.259265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10827 -40.57606 -39.65374 -38.71261 -35.95173 -35.38954 -33.81444 -33.27883 -32.40878 -30.89919 -30.20545 -28.74516 -27.89604 -27.36333 -25.88885 -23.56139 -22.27202 -21.78069 -21.13605 -20.73354 -20.48679 -19.77529 -18.14037 -17.80264 -17.78478 -17.54882 -16.83715 -16.62593 -16.32553 -16.06740 -15.93332 -15.74995 -15.53639 -15.21633 -15.03198 -14.51110 -14.23787 -13.82121 -13.75904 -13.53471 -13.47501 -13.38834 -13.17152 -12.96479 -12.91320 -12.80371 -12.67841 -12.48477 -12.37453 -12.29660 -12.17443 -12.11616 -12.07418 -11.76823 -11.63394 -11.47613 -11.37139 -10.73392 -10.47630 -10.33182 -9.98613 -9.96674 -9.41475 -8.45004 -5.92973 1.36514 1.41427 1.55302 1.75555 2.10502 2.27023 2.29914 2.75877 2.93289 3.21865 3.35231 3.43260 3.69233 3.81368 3.89888 3.92250 4.08923 4.20703 4.23790 4.28720 4.32068 4.36833 4.37573 4.47803 4.49648 4.50878 4.58194 4.60732 4.64066 4.70960 4.75675 4.78029 4.84576 4.91543 4.99518 5.02831 5.05687 5.11947 5.21101 5.27777 5.33532 5.42449 5.57474 5.75246 5.87321 6.10132 6.35353 6.63856 6.68205 7.16226 7.36551 7.60761 8.17561 8.72685 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.002256 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.803841 B =12410.782572 C =13266.707699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.095 3.905 4 H 0.061 0.939 5 C -0.169 4.169 6 C -0.139 4.139 7 C 0.512 3.488 8 O -0.577 6.577 9 N -0.712 5.712 10 C 0.161 3.839 11 H 0.097 0.903 12 C -0.114 4.114 13 C 0.047 3.953 14 H 0.082 0.918 15 C -0.153 4.153 16 C -0.142 4.142 17 C 0.043 3.957 18 H 0.137 0.863 19 N -0.487 5.487 20 C 0.039 3.961 21 C 0.444 3.556 22 O -0.618 6.618 23 N -0.578 5.578 24 C -0.328 4.328 25 H 0.076 0.924 26 C -0.014 4.014 27 N -0.921 5.921 28 Si 0.990 3.010 29 H -0.275 1.275 30 H -0.272 1.272 31 H -0.270 1.270 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.412 0.588 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.395 0.605 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.556 11.012 9.279 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.325 6.325 3 C 0.037 3.963 4 H 0.079 0.921 5 C -0.226 4.226 6 C -0.179 4.179 7 C 0.300 3.700 8 O -0.456 6.456 9 N -0.362 5.362 10 C 0.055 3.945 11 H 0.115 0.885 12 C -0.153 4.153 13 C -0.062 4.062 14 H 0.100 0.900 15 C -0.192 4.192 16 C -0.181 4.181 17 C -0.065 4.065 18 H 0.155 0.845 19 N -0.210 5.210 20 C -0.093 4.093 21 C 0.232 3.768 22 O -0.503 6.503 23 N -0.216 5.216 24 C -0.458 4.458 25 H 0.094 0.906 26 C -0.214 4.214 27 N -0.562 5.562 28 Si 0.814 3.186 29 H -0.200 1.200 30 H -0.197 1.197 31 H -0.196 1.196 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.248 0.752 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.229 0.771 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.879 10.155 10.052 24.482 hybrid contribution 0.944 -0.397 -1.121 1.518 sum -18.935 9.758 8.932 23.098 Atomic orbital electron populations 1.22747 0.80348 1.02862 0.99984 1.87860 1.20799 1.28667 1.95154 1.21945 0.93467 0.84805 0.96053 0.92135 1.22258 1.02874 1.02582 0.94913 1.21952 0.99229 1.06359 0.90324 1.21076 0.84207 0.75609 0.89087 1.90650 1.24816 1.51541 1.78639 1.45991 1.10214 1.70797 1.09236 1.21909 0.98017 0.93760 0.80841 0.88541 1.22928 0.96806 0.96804 0.98779 1.24605 0.92233 0.95416 0.93899 0.90018 1.23542 1.02140 0.96409 0.97115 1.23193 1.03545 0.95220 0.96147 1.24880 0.90882 0.96019 0.94718 0.84499 1.67360 1.05145 1.03462 1.44995 1.21976 0.91603 0.98870 0.96853 1.20861 0.84313 0.87531 0.84117 1.90492 1.81063 1.44899 1.33880 1.41942 1.15401 1.33225 1.31017 1.19637 0.96608 1.13740 1.15789 0.90632 1.25990 1.00221 0.99708 0.95466 1.69676 1.29069 1.37493 1.20007 0.84908 0.77650 0.77846 0.78165 1.19994 1.19698 1.19570 0.94696 0.89714 0.92796 0.89470 0.91975 0.91824 0.87580 0.84424 0.75201 0.90200 0.92810 0.89612 0.91873 0.88961 0.89799 0.87366 0.90263 0.77105 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.82 113.37 1.23 1.91 16 2 O -0.41 -9.50 9.58 -135.19 -1.29 -10.80 16 3 C 0.10 1.67 2.27 30.59 0.07 1.74 16 4 H 0.06 1.12 7.60 -2.39 -0.02 1.10 16 5 C -0.17 -2.01 9.53 71.98 0.69 -1.33 16 6 C -0.14 -2.23 5.41 29.85 0.16 -2.07 16 7 C 0.51 11.76 7.71 87.66 0.68 12.44 16 8 O -0.58 -17.31 15.07 10.75 0.16 -17.15 16 9 N -0.71 -15.17 5.07 -434.91 -2.21 -17.38 16 10 C 0.16 3.61 2.81 46.61 0.13 3.74 16 11 H 0.10 2.18 7.27 -2.39 -0.02 2.17 16 12 C -0.11 -3.05 6.24 32.21 0.20 -2.85 16 13 C 0.05 1.42 4.61 46.69 0.22 1.63 16 14 H 0.08 3.06 7.95 -2.39 -0.02 3.04 16 15 C -0.15 -3.54 5.69 32.75 0.19 -3.36 16 16 C -0.14 -2.62 5.65 32.21 0.18 -2.44 16 17 C 0.04 0.91 4.47 46.15 0.21 1.12 16 18 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 19 N -0.49 -14.69 5.09 -805.82 -4.10 -18.79 16 20 C 0.04 1.28 4.80 85.56 0.41 1.69 16 21 C 0.44 21.00 7.72 87.66 0.68 21.67 16 22 O -0.62 -34.38 15.58 -3.07 -0.05 -34.42 16 23 N -0.58 -29.55 5.29 -306.98 -1.62 -31.17 16 24 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 25 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 26 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 27 N -0.92 -49.64 13.05 21.66 0.28 -49.35 16 28 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 29 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 30 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 31 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 32 H 0.03 0.70 8.09 -2.39 -0.02 0.68 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 0.75 7.87 -2.38 -0.02 0.73 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.70 7.87 -2.38 -0.02 0.68 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.41 7.93 8.66 -92.71 -0.80 7.13 16 41 H 0.08 1.96 7.89 -2.39 -0.02 1.95 16 42 H 0.05 1.67 7.98 -2.39 -0.02 1.65 16 43 H 0.09 1.73 7.89 -2.39 -0.02 1.71 16 44 H 0.06 1.58 6.90 -2.39 -0.02 1.56 16 45 H 0.09 1.39 7.85 -2.39 -0.02 1.37 16 46 H 0.08 1.43 7.63 -2.39 -0.02 1.41 16 47 H 0.11 3.10 8.09 -2.39 -0.02 3.08 16 48 H 0.08 2.38 5.02 -2.39 -0.01 2.36 16 49 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -74.88 399.28 -1.07 -75.95 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.57 Total: 42.14 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 6.31 Total: 15.71 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -7.65 Total: -116.69 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -1.18 Total: -62.37 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.88 -1.07 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110376108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.565 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds