Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99770 * 2 1 4 4 H 1.08992 * 109.47315 * 29.99646 * 3 2 1 5 5 C 1.53009 * 109.47004 * 269.99830 * 3 2 1 6 6 C 1.52998 * 109.47019 * 150.00061 * 3 2 1 7 7 C 1.50698 * 109.47476 * 294.99450 * 6 3 2 8 8 O 1.21283 * 119.99420 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00613 * 179.97438 * 7 6 3 10 10 C 1.46493 * 120.00200 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.55112 * 40.51687 * 10 9 7 12 12 C 1.54839 * 110.74548 * 277.55618 * 10 9 7 13 13 C 1.57333 * 103.38955 * 241.02821 * 12 10 9 14 14 H 1.08996 * 115.51360 * 158.94581 * 13 12 10 15 15 C 1.55855 * 105.76049 * 288.89478 * 13 12 10 16 16 C 1.54834 * 103.51690 * 71.20028 * 15 13 12 17 17 C 1.55848 * 103.52381 * 359.97438 * 16 15 13 18 18 H 1.08994 * 115.58257 * 158.89103 * 17 16 15 19 19 N 1.50652 * 100.34823 * 33.58334 * 13 12 10 20 20 C 1.46900 * 111.00088 * 61.76200 * 19 13 12 21 21 C 1.50705 * 109.46996 * 69.08115 * 20 19 13 22 22 O 1.21294 * 119.99849 * 0.02562 * 21 20 19 23 23 N 1.34773 * 120.00092 * 180.02562 * 21 20 19 24 24 C 1.37098 * 120.00140 * 180.02562 * 23 21 20 25 25 H 1.08006 * 119.99782 * 0.02562 * 24 23 21 26 26 C 1.38947 * 120.00093 * 179.97438 * 24 23 21 27 27 N 1.31415 * 120.00051 * 179.97438 * 26 24 23 28 28 Si 1.86795 * 119.99932 * 0.02562 * 26 24 23 29 29 H 1.48498 * 109.47449 * 89.99841 * 28 26 24 30 30 H 1.48504 * 109.47211 * 209.99559 * 28 26 24 31 31 H 1.48506 * 109.47363 * 329.99511 * 28 26 24 32 32 H 1.09000 * 109.47542 * 60.00369 * 1 2 3 33 33 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47151 * 299.99995 * 1 2 3 35 35 H 1.09001 * 109.47126 * 300.00061 * 5 3 2 36 36 H 1.08997 * 109.47098 * 60.00010 * 5 3 2 37 37 H 1.08997 * 109.46973 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47242 * 174.99602 * 6 3 2 39 39 H 1.09001 * 109.47413 * 55.00269 * 6 3 2 40 40 H 0.97002 * 119.99673 * 0.02562 * 9 7 6 41 41 H 1.09001 * 110.61052 * 359.93929 * 12 10 9 42 42 H 1.09003 * 110.60861 * 122.91964 * 12 10 9 43 43 H 1.08999 * 110.61120 * 189.70488 * 15 13 12 44 44 H 1.08994 * 110.61415 * 312.68638 * 15 13 12 45 45 H 1.09006 * 110.61015 * 241.48800 * 16 15 13 46 46 H 1.09004 * 110.61582 * 118.51174 * 16 15 13 47 47 H 1.08997 * 109.46863 * 309.08379 * 20 19 13 48 48 H 1.09000 * 109.47156 * 189.08262 * 20 19 13 49 49 H 0.97002 * 119.99811 * 359.97438 * 23 21 20 50 50 H 0.96998 * 119.99444 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5137 5 6 2.2176 1.7714 -1.4426 6 6 3.3588 1.2633 0.7212 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7337 2.5901 9 7 4.1952 0.8302 3.0085 10 6 3.9840 0.4996 4.4199 11 1 3.2198 -0.2708 4.5222 12 6 3.5962 1.7628 5.2271 13 6 4.7549 1.8900 6.2838 14 1 4.8870 2.8806 6.7186 15 6 4.5390 0.7207 7.2914 16 6 4.9221 -0.5371 6.4738 17 6 5.3177 0.0400 5.0812 18 1 5.9501 -0.6019 4.4681 19 7 5.9147 1.3655 5.4780 20 6 6.1596 2.2065 4.2987 21 6 6.6900 3.5467 4.7389 22 8 6.8489 3.7782 5.9189 23 7 6.9878 4.4879 3.8214 24 6 7.4709 5.7069 4.2218 25 1 7.6132 5.9127 5.2725 26 6 7.7784 6.6771 3.2759 27 7 8.2410 7.8457 3.6597 28 14 7.5330 6.3208 1.4587 29 1 6.1599 6.7190 1.0572 30 1 8.5238 7.0912 0.6650 31 1 7.7203 4.8689 1.2092 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.8829 1.0774 -1.9564 36 1 1.2568 1.8014 -1.9564 37 1 2.6613 2.7669 -1.4426 38 1 3.8426 2.2370 0.6443 39 1 3.9931 0.5052 0.2617 40 1 5.0934 0.9819 2.6750 41 1 3.5616 2.6375 4.5776 42 1 2.6396 1.6185 5.7294 43 1 5.1953 0.8320 8.1545 44 1 3.4962 0.6719 7.6048 45 1 4.0692 -1.2095 6.3820 46 1 5.7683 -1.0494 6.9317 47 1 5.2268 2.3466 3.7524 48 1 6.8903 1.7212 3.6517 49 1 6.8611 4.3026 2.8777 50 1 8.4553 8.5231 2.9993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110376109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = -76.260773 kcal Electronic energy + Delta-G solvation = -31383.363760 eV Core-core repulsion = 27218.980153 eV Total energy + Delta-G solvation = -4164.383606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39053 -39.57141 -38.10178 -37.84602 -34.38866 -34.01401 -33.06758 -32.05976 -31.58018 -29.74230 -29.27091 -27.74059 -26.75431 -26.50224 -24.02282 -22.74362 -21.48285 -20.75005 -20.25919 -19.79771 -19.18148 -18.11841 -17.37771 -17.07961 -16.62785 -16.29740 -15.54545 -15.46991 -15.29306 -14.99624 -14.81571 -14.74880 -14.37891 -13.75622 -13.52053 -13.35487 -13.13284 -12.90647 -12.85386 -12.51018 -12.46719 -12.32559 -12.25697 -12.06239 -11.94542 -11.69151 -11.63655 -11.51857 -11.34898 -11.24626 -11.03718 -10.96509 -10.69290 -10.59802 -10.35534 -10.00730 -9.86910 -9.71885 -9.59312 -9.12336 -8.66605 -8.23385 -8.17766 -6.33770 -3.85213 2.57362 2.96504 2.99887 3.01146 3.10695 3.58804 3.70107 3.79780 4.06331 4.43575 4.48120 4.51059 4.63169 4.67621 4.86538 4.90193 5.04364 5.11613 5.14580 5.15141 5.19489 5.20690 5.27422 5.28973 5.35045 5.38329 5.42090 5.43769 5.49265 5.57884 5.61185 5.65973 5.70183 5.78167 5.88064 5.88360 5.95722 6.01636 6.14107 6.21692 6.38439 6.46622 6.76667 7.02771 7.06207 7.34826 7.55238 8.11564 8.13729 8.57211 8.92633 9.39324 9.80388 10.79528 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.004433 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.770612 B = 6315.070910 C = 9318.542592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.101 3.899 4 H 0.069 0.931 5 C -0.176 4.176 6 C -0.145 4.145 7 C 0.516 3.484 8 O -0.531 6.531 9 N -0.729 5.729 10 C 0.115 3.885 11 H 0.093 0.907 12 C -0.164 4.164 13 C 0.058 3.942 14 H 0.130 0.870 15 C -0.115 4.115 16 C -0.108 4.108 17 C 0.035 3.965 18 H 0.116 0.884 19 N -0.464 5.464 20 C 0.001 3.999 21 C 0.456 3.544 22 O -0.559 6.559 23 N -0.592 5.592 24 C -0.304 4.304 25 H 0.120 0.880 26 C 0.041 3.959 27 N -0.881 5.881 28 Si 0.878 3.122 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.270 1.270 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.401 0.599 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.368 0.632 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -17.369 -7.640 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.043 3.957 4 H 0.087 0.913 5 C -0.234 4.234 6 C -0.185 4.185 7 C 0.302 3.698 8 O -0.407 6.407 9 N -0.383 5.383 10 C 0.009 3.991 11 H 0.111 0.889 12 C -0.204 4.204 13 C -0.050 4.050 14 H 0.147 0.853 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.075 4.075 18 H 0.133 0.867 19 N -0.187 5.187 20 C -0.131 4.131 21 C 0.241 3.759 22 O -0.441 6.441 23 N -0.231 5.231 24 C -0.433 4.433 25 H 0.137 0.863 26 C -0.162 4.162 27 N -0.521 5.521 28 Si 0.705 3.295 29 H -0.197 1.197 30 H -0.201 1.201 31 H -0.195 1.195 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.238 0.762 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.201 0.799 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.928 -17.310 -6.288 21.942 hybrid contribution -0.533 0.396 -2.373 2.464 sum -12.460 -16.914 -8.661 22.723 Atomic orbital electron populations 1.22683 0.81089 1.02328 0.99750 1.87868 1.19747 1.27061 1.94971 1.21765 0.93484 0.85771 0.94714 0.91331 1.22311 1.02608 1.01881 0.96561 1.21907 0.99314 1.04745 0.92559 1.20576 0.84866 0.76430 0.87880 1.90679 1.23259 1.48825 1.77917 1.46507 1.09898 1.72234 1.09640 1.22769 0.99075 0.97483 0.79761 0.88897 1.24019 1.00185 0.97496 0.98684 1.24858 0.86808 0.99697 0.93643 0.85277 1.22590 1.00891 0.93752 0.98098 1.22492 1.01061 0.97309 0.93736 1.24805 0.92271 0.93816 0.96596 0.86656 1.67521 1.35032 1.00943 1.15169 1.22562 1.01244 0.94920 0.94373 1.19564 0.84307 0.85174 0.86815 1.90551 1.56369 1.80277 1.16856 1.42189 1.59829 1.14121 1.06988 1.19422 1.39349 0.87439 0.97051 0.86284 1.25028 0.97409 0.95343 0.98372 1.69620 1.43372 1.04624 1.34530 0.86699 0.79005 0.78409 0.85430 1.19690 1.20146 1.19519 0.94664 0.90112 0.93585 0.91630 0.92170 0.91274 0.87427 0.87908 0.76209 0.90929 0.90569 0.90702 0.91435 0.91318 0.90544 0.90982 0.89556 0.79941 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.82 101.05 1.09 1.46 16 2 O -0.38 -4.44 9.58 -49.66 -0.48 -4.92 16 3 C 0.10 1.02 2.27 -26.73 -0.06 0.96 16 4 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 5 C -0.18 -1.40 9.53 37.16 0.35 -1.04 16 6 C -0.15 -1.37 5.41 -27.88 -0.15 -1.52 16 7 C 0.52 6.32 7.67 -10.99 -0.08 6.24 16 8 O -0.53 -8.25 15.21 -8.87 -0.13 -8.38 16 9 N -0.73 -8.02 3.75 -51.44 -0.19 -8.21 16 10 C 0.12 1.36 2.48 -65.47 -0.16 1.20 16 11 H 0.09 1.15 7.52 -51.93 -0.39 0.76 16 12 C -0.16 -2.23 5.53 -23.40 -0.13 -2.36 16 13 C 0.06 0.87 4.30 -61.72 -0.27 0.61 16 14 H 0.13 2.36 6.87 -51.93 -0.36 2.01 16 15 C -0.12 -1.38 6.46 -24.24 -0.16 -1.53 16 16 C -0.11 -1.12 6.45 -24.24 -0.16 -1.27 16 17 C 0.03 0.39 4.58 -62.57 -0.29 0.11 16 18 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 19 N -0.46 -7.05 5.31 -206.06 -1.09 -8.14 16 20 C 0.00 0.02 4.02 -4.97 -0.02 0.00 16 21 C 0.46 10.02 7.58 -10.98 -0.08 9.94 16 22 O -0.56 -14.59 14.37 5.55 0.08 -14.51 16 23 N -0.59 -13.62 5.09 -10.96 -0.06 -13.68 16 24 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 25 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 26 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 27 N -0.88 -25.45 13.96 55.50 0.77 -24.67 16 28 Si 0.88 18.78 27.74 -169.99 -4.71 14.06 16 29 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 30 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 31 H -0.27 -5.14 6.52 56.52 0.37 -4.77 16 32 H 0.03 0.28 7.87 -51.93 -0.41 -0.13 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.77 6.49 -40.82 -0.26 3.50 16 41 H 0.07 1.12 7.03 -51.93 -0.36 0.75 16 42 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.70 7.89 -51.93 -0.41 0.30 16 45 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.03 3.51 -51.93 -0.18 0.85 16 48 H 0.09 1.17 7.99 -51.93 -0.42 0.75 16 49 H 0.37 7.35 5.76 -40.82 -0.24 7.12 16 50 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -34.44 389.56 -8.31 -42.75 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -8.01 Total: 14.62 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.36 Total: 5.22 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.57 Total: -54.70 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.53 Total: -27.81 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.44 -8.31 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110376109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.516 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds