Wall clock time and date at job start Tue Mar 31 2020 23:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99770 * 2 1 4 4 H 1.08992 * 109.47315 * 29.99646 * 3 2 1 5 5 C 1.53009 * 109.47004 * 269.99830 * 3 2 1 6 6 C 1.52998 * 109.47019 * 150.00061 * 3 2 1 7 7 C 1.50698 * 109.47476 * 294.99450 * 6 3 2 8 8 O 1.21283 * 119.99420 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00613 * 179.97438 * 7 6 3 10 10 C 1.46493 * 120.00200 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.55112 * 40.51687 * 10 9 7 12 12 C 1.54839 * 110.74548 * 277.55618 * 10 9 7 13 13 C 1.57333 * 103.38955 * 241.02821 * 12 10 9 14 14 H 1.08996 * 115.51360 * 158.94581 * 13 12 10 15 15 C 1.55855 * 105.76049 * 288.89478 * 13 12 10 16 16 C 1.54834 * 103.51690 * 71.20028 * 15 13 12 17 17 C 1.55848 * 103.52381 * 359.97438 * 16 15 13 18 18 H 1.08994 * 115.58257 * 158.89103 * 17 16 15 19 19 N 1.50652 * 100.34823 * 33.58334 * 13 12 10 20 20 C 1.46900 * 111.00088 * 61.76200 * 19 13 12 21 21 C 1.50705 * 109.46996 * 69.08115 * 20 19 13 22 22 O 1.21294 * 119.99849 * 0.02562 * 21 20 19 23 23 N 1.34773 * 120.00092 * 180.02562 * 21 20 19 24 24 C 1.37098 * 120.00140 * 180.02562 * 23 21 20 25 25 H 1.08006 * 119.99782 * 0.02562 * 24 23 21 26 26 C 1.38947 * 120.00093 * 179.97438 * 24 23 21 27 27 N 1.31415 * 120.00051 * 179.97438 * 26 24 23 28 28 Si 1.86795 * 119.99932 * 0.02562 * 26 24 23 29 29 H 1.48498 * 109.47449 * 89.99841 * 28 26 24 30 30 H 1.48504 * 109.47211 * 209.99559 * 28 26 24 31 31 H 1.48506 * 109.47363 * 329.99511 * 28 26 24 32 32 H 1.09000 * 109.47542 * 60.00369 * 1 2 3 33 33 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47151 * 299.99995 * 1 2 3 35 35 H 1.09001 * 109.47126 * 300.00061 * 5 3 2 36 36 H 1.08997 * 109.47098 * 60.00010 * 5 3 2 37 37 H 1.08997 * 109.46973 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47242 * 174.99602 * 6 3 2 39 39 H 1.09001 * 109.47413 * 55.00269 * 6 3 2 40 40 H 0.97002 * 119.99673 * 0.02562 * 9 7 6 41 41 H 1.09001 * 110.61052 * 359.93929 * 12 10 9 42 42 H 1.09003 * 110.60861 * 122.91964 * 12 10 9 43 43 H 1.08999 * 110.61120 * 189.70488 * 15 13 12 44 44 H 1.08994 * 110.61415 * 312.68638 * 15 13 12 45 45 H 1.09006 * 110.61015 * 241.48800 * 16 15 13 46 46 H 1.09004 * 110.61582 * 118.51174 * 16 15 13 47 47 H 1.08997 * 109.46863 * 309.08379 * 20 19 13 48 48 H 1.09000 * 109.47156 * 189.08262 * 20 19 13 49 49 H 0.97002 * 119.99811 * 359.97438 * 23 21 20 50 50 H 0.96998 * 119.99444 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5137 5 6 2.2176 1.7714 -1.4426 6 6 3.3588 1.2633 0.7212 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7337 2.5901 9 7 4.1952 0.8302 3.0085 10 6 3.9840 0.4996 4.4199 11 1 3.2198 -0.2708 4.5222 12 6 3.5962 1.7628 5.2271 13 6 4.7549 1.8900 6.2838 14 1 4.8870 2.8806 6.7186 15 6 4.5390 0.7207 7.2914 16 6 4.9221 -0.5371 6.4738 17 6 5.3177 0.0400 5.0812 18 1 5.9501 -0.6019 4.4681 19 7 5.9147 1.3655 5.4780 20 6 6.1596 2.2065 4.2987 21 6 6.6900 3.5467 4.7389 22 8 6.8489 3.7782 5.9189 23 7 6.9878 4.4879 3.8214 24 6 7.4709 5.7069 4.2218 25 1 7.6132 5.9127 5.2725 26 6 7.7784 6.6771 3.2759 27 7 8.2410 7.8457 3.6597 28 14 7.5330 6.3208 1.4587 29 1 6.1599 6.7190 1.0572 30 1 8.5238 7.0912 0.6650 31 1 7.7203 4.8689 1.2092 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.8829 1.0774 -1.9564 36 1 1.2568 1.8014 -1.9564 37 1 2.6613 2.7669 -1.4426 38 1 3.8426 2.2370 0.6443 39 1 3.9931 0.5052 0.2617 40 1 5.0934 0.9819 2.6750 41 1 3.5616 2.6375 4.5776 42 1 2.6396 1.6185 5.7294 43 1 5.1953 0.8320 8.1545 44 1 3.4962 0.6719 7.6048 45 1 4.0692 -1.2095 6.3820 46 1 5.7683 -1.0494 6.9317 47 1 5.2268 2.3466 3.7524 48 1 6.8903 1.7212 3.6517 49 1 6.8611 4.3026 2.8777 50 1 8.4553 8.5231 2.9993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110376109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:43 Heat of formation + Delta-G solvation = -103.491617 kcal Electronic energy + Delta-G solvation = -31384.544578 eV Core-core repulsion = 27218.980153 eV Total energy + Delta-G solvation = -4165.564424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45862 -40.53042 -39.79891 -38.71613 -36.01188 -35.33466 -33.80175 -33.77655 -33.11602 -30.73588 -30.19554 -28.63068 -28.05804 -27.38321 -25.74552 -23.62055 -22.28326 -21.73521 -21.68731 -20.95274 -20.72725 -19.82445 -18.31857 -17.85133 -17.62874 -17.55535 -17.02682 -16.72406 -16.40400 -16.16898 -15.94335 -15.69592 -15.50050 -15.14046 -14.89580 -14.54184 -14.52020 -14.16838 -13.85510 -13.72263 -13.48910 -13.27416 -13.21920 -13.06791 -12.93766 -12.89842 -12.74482 -12.55400 -12.40823 -12.32110 -12.31808 -12.07114 -11.97607 -11.71762 -11.66709 -11.47399 -11.31734 -10.77815 -10.50862 -10.39940 -10.23581 -10.08928 -9.46907 -8.40266 -6.01427 1.28940 1.36117 1.45341 1.67696 1.97389 2.14063 2.24278 2.58655 2.88695 3.08017 3.15936 3.57136 3.65436 3.71679 3.78778 3.86499 4.03148 4.11066 4.17853 4.21118 4.28089 4.35007 4.39392 4.42895 4.48675 4.50407 4.51223 4.58967 4.60682 4.71450 4.73242 4.76029 4.82423 4.90455 4.93521 5.03087 5.07068 5.20103 5.25192 5.30694 5.31408 5.49271 5.53350 5.70131 5.88010 6.01251 6.29990 6.50583 6.60517 6.89435 7.26408 7.40457 7.98526 8.77597 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.004433 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.770612 B = 6315.070910 C = 9318.542592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.398 6.398 3 C 0.095 3.905 4 H 0.051 0.949 5 C -0.170 4.170 6 C -0.143 4.143 7 C 0.511 3.489 8 O -0.569 6.569 9 N -0.721 5.721 10 C 0.124 3.876 11 H 0.095 0.905 12 C -0.156 4.156 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.111 4.111 16 C -0.102 4.102 17 C 0.047 3.953 18 H 0.145 0.855 19 N -0.488 5.488 20 C 0.015 3.985 21 C 0.453 3.547 22 O -0.609 6.609 23 N -0.590 5.590 24 C -0.327 4.327 25 H 0.052 0.948 26 C -0.017 4.017 27 N -0.937 5.937 28 Si 0.962 3.038 29 H -0.257 1.257 30 H -0.277 1.277 31 H -0.223 1.223 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.412 0.588 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.124 0.876 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.354 -20.541 -11.305 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.317 6.317 3 C 0.037 3.963 4 H 0.069 0.931 5 C -0.227 4.227 6 C -0.183 4.183 7 C 0.299 3.701 8 O -0.448 6.448 9 N -0.376 5.376 10 C 0.017 3.983 11 H 0.113 0.887 12 C -0.197 4.197 13 C -0.063 4.063 14 H 0.100 0.900 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.061 4.061 18 H 0.163 0.837 19 N -0.211 5.211 20 C -0.117 4.117 21 C 0.241 3.759 22 O -0.493 6.493 23 N -0.232 5.232 24 C -0.457 4.457 25 H 0.070 0.930 26 C -0.215 4.215 27 N -0.578 5.578 28 Si 0.782 3.218 29 H -0.181 1.181 30 H -0.202 1.202 31 H -0.145 1.145 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.251 0.749 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.142 0.858 49 H 0.224 0.776 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.266 -20.514 -9.958 25.893 hybrid contribution -0.445 1.438 -1.030 1.824 sum -12.711 -19.076 -10.988 25.421 Atomic orbital electron populations 1.22748 0.80450 1.03030 0.99760 1.87825 1.20605 1.28131 1.95139 1.21901 0.93522 0.84894 0.96031 0.93076 1.22260 1.02974 1.02547 0.94939 1.22008 0.99405 1.06582 0.90258 1.21147 0.84346 0.75496 0.89072 1.90670 1.24808 1.50536 1.78766 1.46431 1.10357 1.71697 1.09090 1.22634 0.99426 0.96155 0.80060 0.88711 1.23921 0.99771 0.97752 0.98220 1.24677 0.87767 0.98726 0.95107 0.89998 1.22569 1.01641 0.93472 0.97250 1.22529 1.02344 0.96487 0.92619 1.24965 0.91812 0.91912 0.97443 0.83744 1.67514 1.35821 1.02521 1.15214 1.22516 1.02633 0.91365 0.95141 1.20843 0.82176 0.86949 0.85980 1.90538 1.57755 1.81633 1.19347 1.41977 1.60180 1.12793 1.08269 1.18974 1.41683 0.90376 0.94636 0.93008 1.26152 0.95930 0.94261 1.05192 1.69817 1.44537 1.06217 1.37193 0.85407 0.79382 0.81032 0.76007 1.18126 1.20192 1.14547 0.93057 0.89140 0.95147 0.90971 0.92094 0.90114 0.85207 0.85760 0.74900 0.93155 0.90323 0.91843 0.89983 0.88944 0.89688 0.89041 0.85796 0.77564 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.82 113.37 1.23 1.88 16 2 O -0.40 -8.60 9.58 -135.19 -1.30 -9.89 16 3 C 0.09 1.69 2.27 30.60 0.07 1.76 16 4 H 0.05 1.07 7.60 -2.39 -0.02 1.05 16 5 C -0.17 -2.15 9.53 71.99 0.69 -1.47 16 6 C -0.14 -2.16 5.41 29.85 0.16 -2.00 16 7 C 0.51 11.10 7.67 87.66 0.67 11.77 16 8 O -0.57 -16.87 15.21 10.75 0.16 -16.70 16 9 N -0.72 -13.30 3.75 -435.04 -1.63 -14.93 16 10 C 0.12 2.57 2.48 46.59 0.12 2.69 16 11 H 0.09 2.05 7.52 -2.39 -0.02 2.03 16 12 C -0.16 -4.15 5.53 32.75 0.18 -3.97 16 13 C 0.05 1.40 4.30 46.69 0.20 1.60 16 14 H 0.08 3.27 6.87 -2.39 -0.02 3.25 16 15 C -0.11 -2.57 6.46 32.21 0.21 -2.36 16 16 C -0.10 -1.79 6.45 32.21 0.21 -1.58 16 17 C 0.05 0.90 4.58 46.12 0.21 1.11 16 18 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 19 N -0.49 -14.05 5.31 -805.83 -4.28 -18.33 16 20 C 0.02 0.45 4.02 85.56 0.34 0.79 16 21 C 0.45 20.12 7.58 87.66 0.66 20.78 16 22 O -0.61 -33.64 14.37 -3.07 -0.04 -33.69 16 23 N -0.59 -27.09 5.09 -306.98 -1.56 -28.65 16 24 C -0.33 -19.01 10.16 84.04 0.85 -18.15 16 25 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 26 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 27 N -0.94 -56.28 13.96 21.66 0.30 -55.98 16 28 Si 0.96 37.20 27.74 68.60 1.90 39.11 16 29 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 30 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 31 H -0.22 -6.88 6.52 99.48 0.65 -6.23 16 32 H 0.05 0.72 7.87 -2.39 -0.02 0.71 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.76 7.87 -2.39 -0.02 0.74 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 5.73 6.49 -92.71 -0.60 5.13 16 41 H 0.05 1.54 7.03 -2.39 -0.02 1.52 16 42 H 0.08 2.01 7.89 -2.39 -0.02 1.99 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.62 7.89 -2.39 -0.02 1.60 16 45 H 0.09 1.25 7.85 -2.38 -0.02 1.23 16 46 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.09 2.36 3.51 -2.39 -0.01 2.35 16 48 H 0.12 2.75 7.99 -2.39 -0.02 2.73 16 49 H 0.39 14.38 5.76 -92.71 -0.53 13.84 16 50 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -83.66 389.56 -0.41 -84.07 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.23 Total: 42.61 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.27 Total: 12.38 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -7.17 Total: -117.89 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.18 Total: -60.28 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.11 kcal Total: -83.66 -0.41 -84.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110376109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.419 kcal (2) G-P(sol) polarization free energy of solvation -83.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds