Wall clock time and date at job start Tue Mar 31 2020 22:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.57536 * 2 1 4 4 C 1.53094 * 109.52142 * 239.84036 * 2 1 3 5 5 O 1.42903 * 109.41523 * 182.49232 * 4 2 1 6 6 C 1.42898 * 114.10218 * 61.15228 * 5 4 2 7 7 C 1.53092 * 109.41783 * 298.84889 * 6 5 4 8 8 C 1.53170 * 109.16543 * 57.60433 * 7 6 5 9 9 H 1.09000 * 109.61725 * 62.93004 * 8 7 6 10 10 C 1.50699 * 109.54672 * 183.15488 * 8 7 6 11 11 O 1.21283 * 120.00319 * 94.58797 * 10 8 7 12 12 N 1.34778 * 120.00217 * 274.58878 * 10 8 7 13 13 C 1.47075 * 120.88144 * 175.13162 * 12 10 8 14 14 C 1.53244 * 108.51997 * 231.20469 * 13 12 10 15 15 N 1.46898 * 109.34422 * 306.17392 * 14 13 12 16 16 C 1.46894 * 111.00460 * 187.25367 * 15 14 13 17 17 C 1.50692 * 109.47303 * 169.99703 * 16 15 14 18 18 O 1.21296 * 120.00234 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00044 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00017 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00169 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00162 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99534 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00142 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47728 * 59.99711 * 24 22 20 26 26 H 1.48499 * 109.47336 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46928 * 299.99145 * 24 22 20 28 28 C 1.46900 * 111.26974 * 63.09867 * 15 14 13 29 29 C 1.47083 * 120.87836 * 355.15378 * 12 10 8 30 30 H 1.09002 * 109.47248 * 299.84756 * 1 2 3 31 31 H 1.09006 * 109.47259 * 59.84278 * 1 2 3 32 32 H 1.09004 * 109.47809 * 179.84479 * 1 2 3 33 33 H 1.09003 * 109.47636 * 302.46957 * 4 2 1 34 34 H 1.08999 * 109.48278 * 62.50754 * 4 2 1 35 35 H 1.08996 * 109.47822 * 58.82917 * 6 5 4 36 36 H 1.09003 * 109.48278 * 178.86289 * 6 5 4 37 37 H 1.09002 * 109.51912 * 297.70137 * 7 6 5 38 38 H 1.09002 * 109.52353 * 177.51146 * 7 6 5 39 39 H 1.08996 * 109.62939 * 111.49978 * 13 12 10 40 40 H 1.08993 * 109.63495 * 350.91583 * 13 12 10 41 41 H 1.09001 * 109.49514 * 186.20804 * 14 13 12 42 42 H 1.09002 * 109.48773 * 66.13322 * 14 13 12 43 43 H 1.08999 * 109.47198 * 49.99274 * 16 15 14 44 44 H 1.09003 * 109.47068 * 290.00132 * 16 15 14 45 45 H 0.96995 * 119.99853 * 0.02562 * 19 17 16 46 46 H 0.97001 * 120.00068 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.49026 * 56.85635 * 28 15 14 48 48 H 1.08996 * 109.49244 * 176.93728 * 28 15 14 49 49 H 1.08996 * 109.62673 * 248.50037 * 29 12 10 50 50 H 1.09004 * 109.62912 * 8.89015 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0269 0.0000 4 6 2.0415 -0.7249 -1.2476 5 8 3.4693 -0.7745 -1.2162 6 6 4.0042 -1.4817 -0.0956 7 6 3.5715 -0.7872 1.1982 8 6 2.0418 -0.7253 1.2484 9 1 1.6353 -1.7363 1.2750 10 6 1.6077 0.0252 2.4810 11 8 1.3712 1.2130 2.4159 12 7 1.4823 -0.6234 3.6557 13 6 1.1637 0.1077 4.8914 14 6 2.1828 -0.2855 5.9662 15 7 2.2098 -1.7482 6.0993 16 6 3.0457 -2.1582 7.2355 17 6 2.8565 -3.6309 7.4927 18 8 2.1001 -4.2758 6.7975 19 7 3.5285 -4.2318 8.4946 20 6 3.3568 -5.5718 8.7282 21 1 2.6833 -6.1459 8.1093 22 6 4.0492 -6.1912 9.7615 23 7 4.8691 -5.4927 10.5144 24 14 3.8158 -8.0170 10.0794 25 1 4.2119 -8.7846 8.8714 26 1 4.6611 -8.4316 11.2278 27 1 2.3892 -8.2866 10.3916 28 6 2.6605 -2.3882 4.8561 29 6 1.6609 -2.0812 3.7359 30 1 -0.3634 0.5115 0.8914 31 1 -0.3634 0.5163 -0.8886 32 1 -0.3635 -1.0277 -0.0028 33 1 1.6430 -1.7393 -1.2676 34 1 1.7159 -0.1886 -2.1389 35 1 3.6314 -2.5059 -0.1006 36 1 5.0925 -1.4905 -0.1570 37 1 3.9779 0.2239 1.2224 38 1 3.9415 -1.3502 2.0552 39 1 0.1600 -0.1563 5.2246 40 1 1.2211 1.1805 4.7074 41 1 1.8977 0.1612 6.9187 42 1 3.1714 0.0718 5.6780 43 1 2.7556 -1.5943 8.1220 44 1 4.0928 -1.9610 7.0060 45 1 4.1337 -3.7163 9.0503 46 1 5.3528 -5.9251 11.2354 47 1 3.6425 -2.0015 4.5834 48 1 2.7218 -3.4663 5.0036 49 1 0.7050 -2.5555 3.9580 50 1 2.0439 -2.4559 2.7867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113315940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:31 Heat of formation + Delta-G solvation = -109.951622 kcal Electronic energy + Delta-G solvation = -30768.270232 eV Core-core repulsion = 26602.425681 eV Total energy + Delta-G solvation = -4165.844551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94714 -39.35524 -38.51506 -37.29182 -34.67646 -34.58061 -33.82923 -32.55175 -31.32260 -31.07693 -28.99089 -27.35804 -26.33958 -25.42231 -23.88140 -23.68729 -22.65531 -21.62201 -20.39292 -19.31949 -18.83393 -17.95247 -17.47574 -16.55612 -16.49396 -16.10576 -15.57463 -15.48884 -15.13478 -15.03326 -14.81023 -14.66931 -14.45307 -14.30270 -13.96637 -13.77846 -13.66893 -13.41469 -13.17660 -12.59580 -12.46823 -12.40095 -12.25192 -12.01065 -11.79128 -11.64985 -11.57628 -11.38104 -11.30147 -11.16839 -11.14518 -10.92728 -10.85791 -10.66372 -10.48423 -10.26574 -10.11530 -9.55839 -9.51482 -8.90662 -8.43011 -8.04550 -7.95167 -6.46927 -3.88054 2.47274 2.83190 3.15788 3.22421 3.26106 3.55774 3.82172 3.88313 4.17462 4.19092 4.28010 4.39807 4.56605 4.69682 4.87196 4.88200 4.94821 5.01528 5.08502 5.09693 5.17481 5.18448 5.21920 5.27048 5.32481 5.34044 5.36626 5.42156 5.45127 5.54157 5.66846 5.72628 5.73304 5.74906 5.82402 5.84652 5.95521 6.03110 6.08013 6.12373 6.19743 6.43253 6.85984 7.07748 7.24144 7.34002 7.49812 8.00179 8.04940 8.55397 9.12199 9.48257 9.99300 10.70585 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002354 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.114228 B =11891.123950 C =12665.864288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.091 0.909 4 C 0.066 3.934 5 O -0.382 6.382 6 C 0.063 3.937 7 C -0.145 4.145 8 C -0.107 4.107 9 H 0.095 0.905 10 C 0.524 3.476 11 O -0.544 6.544 12 N -0.611 5.611 13 C 0.119 3.881 14 C 0.041 3.959 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.579 6.579 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.039 3.961 29 C 0.112 3.888 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.273 0.727 47 H 0.027 0.973 48 H 0.116 0.884 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 10.541 -17.647 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 H 0.109 0.891 4 C -0.011 4.011 5 O -0.300 6.300 6 C -0.014 4.014 7 C -0.183 4.183 8 C -0.129 4.129 9 H 0.113 0.887 10 C 0.312 3.688 11 O -0.422 6.422 12 N -0.344 5.344 13 C -0.004 4.004 14 C -0.088 4.088 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.464 6.464 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.089 4.089 29 C -0.011 4.011 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.134 0.866 49 H 0.100 0.900 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.002 10.597 -18.016 21.281 hybrid contribution 0.999 -0.521 0.976 1.490 sum -3.003 10.077 -17.040 20.023 Atomic orbital electron populations 1.21784 0.94066 1.01830 1.02863 1.21635 0.96722 1.01204 0.93223 0.89065 1.22695 0.80921 0.99697 0.97769 1.87943 1.20370 1.76399 1.45336 1.22582 0.99446 0.94528 0.84797 1.22165 0.93389 1.03240 0.99543 1.21477 0.97341 1.00616 0.93419 0.88721 1.20456 0.76677 0.87474 0.84166 1.90663 1.50715 1.15609 1.85183 1.48275 1.69696 1.08659 1.07783 1.21686 0.98781 0.97257 0.82672 1.22512 0.98029 0.88917 0.99363 1.61488 1.53243 1.05644 1.03503 1.21851 0.95364 0.96844 0.94410 1.19695 0.85121 0.88104 0.84272 1.90472 1.40268 1.65728 1.49923 1.41870 1.39467 1.09873 1.28632 1.19641 1.24763 0.84202 1.14378 0.87922 1.25271 0.96118 1.00494 0.96002 1.69602 1.27681 1.37033 1.19895 0.85917 0.78403 0.82018 0.77884 1.19902 1.20971 1.19856 1.22642 0.94597 1.03088 0.88570 1.21972 1.01071 0.79121 0.98934 0.91618 0.92175 0.92728 0.92970 0.88532 0.92712 0.88332 0.90281 0.90113 0.90612 0.88968 0.89474 0.94769 0.89171 0.93455 0.77477 0.91761 0.95530 0.86576 0.89964 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.96 37.15 0.33 -0.96 16 2 C -0.11 -1.02 2.07 -90.48 -0.19 -1.20 16 3 H 0.09 1.03 7.77 -51.93 -0.40 0.63 16 4 C 0.07 0.54 6.13 37.21 0.23 0.76 16 5 O -0.38 -3.78 10.77 -35.23 -0.38 -4.16 16 6 C 0.06 0.51 6.84 37.20 0.25 0.77 16 7 C -0.15 -1.31 5.31 -26.60 -0.14 -1.45 16 8 C -0.11 -1.04 1.28 -91.59 -0.12 -1.16 16 9 H 0.09 0.81 6.32 -51.93 -0.33 0.48 16 10 C 0.52 6.52 6.05 -10.99 -0.07 6.46 16 11 O -0.54 -8.34 14.69 5.55 0.08 -8.26 16 12 N -0.61 -7.46 3.01 -172.46 -0.52 -7.98 16 13 C 0.12 1.44 6.58 -3.60 -0.02 1.42 16 14 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 15 N -0.51 -7.92 4.37 -235.77 -1.03 -8.95 16 16 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 17 C 0.44 9.84 7.44 -10.99 -0.08 9.75 16 18 O -0.58 -14.54 13.91 5.54 0.08 -14.46 16 19 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 20 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 21 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 24 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 C 0.04 0.57 5.26 -3.70 -0.02 0.55 16 29 C 0.11 1.33 6.42 -3.60 -0.02 1.31 16 30 H 0.06 0.72 6.74 -51.93 -0.35 0.37 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.70 7.90 -51.93 -0.41 0.29 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.13 7.10 -51.93 -0.37 0.76 16 41 H 0.09 0.97 7.99 -51.93 -0.41 0.55 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 44 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.12 2.03 5.76 -51.93 -0.30 1.73 16 49 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.08 0.81 5.26 -51.93 -0.27 0.53 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -31.59 388.40 -8.57 -40.16 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.17 Total: 9.49 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.13 Total: 9.77 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.88 Total: -53.87 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.22 Total: -26.89 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.59 -8.57 -40.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113315940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.788 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds