Wall clock time and date at job start Tue Mar 31 2020 22:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52711 * 2 1 4 4 C 1.53088 * 109.57622 * 239.84288 * 2 1 3 5 5 O 1.42905 * 109.41441 * 297.67439 * 4 2 1 6 6 C 1.42903 * 114.09999 * 298.84337 * 5 4 2 7 7 C 1.53090 * 109.41685 * 61.15354 * 6 5 4 8 8 C 1.53177 * 109.16374 * 302.39645 * 7 6 5 9 9 H 1.09004 * 109.61958 * 297.06891 * 8 7 6 10 10 C 1.50696 * 109.54630 * 176.84757 * 8 7 6 11 11 O 1.21285 * 119.99471 * 335.94974 * 10 8 7 12 12 N 1.34774 * 120.00463 * 155.94929 * 10 8 7 13 13 C 1.47075 * 120.88430 * 175.33272 * 12 10 8 14 14 C 1.53240 * 108.52399 * 231.20970 * 13 12 10 15 15 N 1.46905 * 109.33620 * 306.16683 * 14 13 12 16 16 C 1.46898 * 110.99642 * 187.24881 * 15 14 13 17 17 C 1.50705 * 109.46880 * 169.99981 * 16 15 14 18 18 O 1.21289 * 119.99777 * 0.02562 * 17 16 15 19 19 N 1.34769 * 120.00053 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00094 * 179.97438 * 19 17 16 21 21 H 1.08005 * 120.00024 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00262 * 179.72571 * 20 19 17 23 23 N 1.31413 * 119.99524 * 0.28138 * 22 20 19 24 24 Si 1.86795 * 120.00139 * 180.27681 * 22 20 19 25 25 H 1.48504 * 109.47019 * 90.00198 * 24 22 20 26 26 H 1.48502 * 109.47244 * 210.00118 * 24 22 20 27 27 H 1.48496 * 109.47245 * 330.00337 * 24 22 20 28 28 C 1.46905 * 111.26788 * 63.10679 * 15 14 13 29 29 C 1.47082 * 120.87858 * 355.35724 * 12 10 8 30 30 H 1.09002 * 109.46802 * 304.78531 * 1 2 3 31 31 H 1.09003 * 109.46846 * 64.77973 * 1 2 3 32 32 H 1.08993 * 109.47236 * 184.78012 * 1 2 3 33 33 H 1.09004 * 109.48472 * 57.65252 * 4 2 1 34 34 H 1.08999 * 109.48628 * 177.68324 * 4 2 1 35 35 H 1.08997 * 109.48146 * 181.14498 * 6 5 4 36 36 H 1.09011 * 109.47517 * 301.17332 * 6 5 4 37 37 H 1.09003 * 109.52154 * 182.49013 * 7 6 5 38 38 H 1.08996 * 109.52065 * 62.30197 * 7 6 5 39 39 H 1.08995 * 109.63295 * 111.49871 * 13 12 10 40 40 H 1.09007 * 109.79056 * 351.00959 * 13 12 10 41 41 H 1.08997 * 109.49309 * 186.21040 * 14 13 12 42 42 H 1.08998 * 109.51395 * 66.14010 * 14 13 12 43 43 H 1.09007 * 109.47139 * 50.00861 * 16 15 14 44 44 H 1.08992 * 109.47799 * 289.99970 * 16 15 14 45 45 H 0.97001 * 120.00364 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99429 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.49122 * 56.85120 * 28 15 14 48 48 H 1.08993 * 109.49220 * 176.93298 * 28 15 14 49 49 H 1.09002 * 109.62358 * 248.50046 * 29 12 10 50 50 H 1.08997 * 109.62678 * 9.08085 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7246 -1.2472 5 8 1.6123 -2.0869 -1.2159 6 6 2.0995 -2.8272 -0.0949 7 6 1.5889 -2.1871 1.1986 8 6 2.0418 -0.7246 1.2487 9 1 3.1306 -0.6794 1.2760 10 6 1.4789 -0.0645 2.4809 11 8 0.4762 -0.5061 3.0010 12 7 2.0897 1.0166 3.0050 13 6 1.5025 1.7370 4.1448 14 6 1.4372 3.2280 3.7970 15 7 2.7704 3.6913 3.3896 16 6 2.7897 5.1495 3.2131 17 6 4.2123 5.6155 3.0387 18 8 5.1205 4.8119 3.0589 19 7 4.4752 6.9252 2.8603 20 6 5.7693 7.3493 2.7021 21 1 6.5781 6.6337 2.7200 22 6 6.0400 8.6990 2.5124 23 7 5.0559 9.5696 2.4902 24 14 7.8026 9.2757 2.2891 25 1 8.1501 9.2580 0.8454 26 1 7.9417 10.6576 2.8148 27 1 8.7173 8.3701 3.0296 28 6 3.2227 3.0075 2.1706 29 6 3.3611 1.5075 2.4518 30 1 -0.3633 0.5863 0.8440 31 1 -0.3633 0.4379 -0.9297 32 1 -0.3633 -1.0240 0.0856 33 1 1.6467 -0.2386 -2.1388 34 1 3.1321 -0.6880 -1.2668 35 1 1.7441 -3.8558 -0.1564 36 1 3.1895 -2.8182 -0.0993 37 1 1.9953 -2.7239 2.0558 38 1 0.5001 -2.2322 1.2223 39 1 2.1247 1.5941 5.0282 40 1 0.4976 1.3623 4.3402 41 1 1.1075 3.7911 4.6701 42 1 0.7334 3.3805 2.9788 43 1 2.3560 5.6276 4.0915 44 1 2.2091 5.4165 2.3302 45 1 3.7489 7.5680 2.8445 46 1 5.2449 10.5118 2.3582 47 1 2.4940 3.1627 1.3749 48 1 4.1878 3.4107 1.8642 49 1 4.1620 1.3425 3.1726 50 1 3.5847 0.9802 1.5245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113315941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:33 Heat of formation + Delta-G solvation = -129.805973 kcal Electronic energy + Delta-G solvation = -30960.646107 eV Core-core repulsion = 26793.940607 eV Total energy + Delta-G solvation = -4166.705500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92554 -40.55966 -39.78053 -38.57277 -36.06023 -35.57851 -35.19989 -33.25227 -32.83870 -32.18651 -30.28199 -28.32653 -27.50537 -26.64099 -25.34312 -24.74072 -24.03602 -22.45300 -21.06838 -20.71566 -19.87717 -19.42479 -18.35272 -17.80838 -17.58544 -16.97344 -16.70309 -16.62704 -16.48212 -16.34719 -16.12457 -15.89730 -15.64182 -15.39523 -15.28135 -14.98715 -14.64580 -14.42823 -14.19108 -13.87143 -13.65200 -13.50493 -13.22274 -13.01295 -12.97241 -12.79362 -12.66823 -12.48066 -12.41712 -12.36077 -12.29950 -12.17825 -12.13061 -12.07116 -11.58485 -11.42871 -11.29844 -10.88858 -10.35404 -10.32602 -9.98767 -9.77685 -9.22929 -8.44709 -5.92806 1.39139 1.43459 1.51958 1.55626 1.88038 2.07547 2.29330 2.71481 2.96345 3.22590 3.34526 3.37355 3.59371 3.65027 3.81540 3.92059 3.95837 4.08489 4.12561 4.18661 4.20777 4.25136 4.39167 4.44320 4.45725 4.48444 4.51035 4.56349 4.61663 4.68429 4.70793 4.75845 4.78204 4.82373 4.88575 4.92350 5.00295 5.05344 5.10850 5.14560 5.36350 5.42344 5.43706 5.81363 6.04679 6.12717 6.27032 6.35920 6.62414 7.08356 7.15224 7.59154 8.13966 8.72713 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.002414 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.636677 B =11596.811394 C =12364.388848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.088 0.912 4 C 0.067 3.933 5 O -0.396 6.396 6 C 0.062 3.938 7 C -0.136 4.136 8 C -0.106 4.106 9 H 0.113 0.887 10 C 0.523 3.477 11 O -0.575 6.575 12 N -0.611 5.611 13 C 0.119 3.881 14 C 0.047 3.953 15 N -0.530 5.530 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.610 6.610 19 N -0.575 5.575 20 C -0.328 4.328 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.274 1.274 27 H -0.272 1.272 28 C 0.042 3.958 29 C 0.121 3.879 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.038 0.962 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 -18.857 -4.998 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 H 0.106 0.894 4 C -0.009 4.009 5 O -0.315 6.315 6 C -0.014 4.014 7 C -0.174 4.174 8 C -0.127 4.127 9 H 0.130 0.870 10 C 0.313 3.687 11 O -0.455 6.455 12 N -0.344 5.344 13 C -0.004 4.004 14 C -0.081 4.081 15 N -0.255 5.255 16 C -0.073 4.073 17 C 0.232 3.768 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.458 4.458 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.199 1.199 27 H -0.197 1.197 28 C -0.086 4.086 29 C -0.002 4.002 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.056 0.944 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.098 -19.612 -4.488 21.688 hybrid contribution -0.008 1.516 -0.152 1.523 sum -8.106 -18.096 -4.641 20.365 Atomic orbital electron populations 1.21726 0.94621 1.01944 1.01166 1.21719 0.97092 1.00229 0.94160 0.89368 1.22723 0.99511 0.81639 0.97073 1.87924 1.74730 1.23001 1.45823 1.22709 0.98975 0.95914 0.83846 1.22059 1.02396 0.93284 0.99620 1.21502 1.02408 0.96647 0.92134 0.86959 1.20925 0.83168 0.79475 0.85121 1.90652 1.27172 1.64308 1.63366 1.48320 1.23921 1.28864 1.33273 1.21658 0.99926 0.90137 0.88657 1.22522 0.88446 0.95685 1.01416 1.61479 1.25895 1.03501 1.34671 1.21721 0.93282 0.89221 1.03059 1.20654 0.91690 0.82347 0.82152 1.90454 1.48456 1.53981 1.56665 1.41949 1.08555 1.06783 1.63985 1.19652 0.85306 0.92681 1.48125 0.90059 1.26016 1.03432 0.95340 0.96587 1.69676 1.33293 1.03331 1.50053 0.84953 0.77376 0.77530 0.78665 1.19655 1.19890 1.19673 1.22533 1.01476 0.94373 0.90222 1.21910 0.84789 0.93087 1.00398 0.94753 0.91501 0.92480 0.87459 0.91151 0.87390 0.91383 0.90336 0.91455 0.90737 0.88990 0.87857 0.94372 0.87138 0.91708 0.77141 0.91424 0.94611 0.89771 0.90822 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.35 71.98 0.60 -2.08 16 2 C -0.11 -1.84 2.66 -10.70 -0.03 -1.87 16 3 H 0.09 1.40 7.78 -2.39 -0.02 1.38 16 4 C 0.07 0.92 6.26 72.01 0.45 1.38 16 5 O -0.40 -6.76 10.28 -148.98 -1.53 -8.30 16 6 C 0.06 0.83 6.84 72.01 0.49 1.32 16 7 C -0.14 -2.29 4.65 30.68 0.14 -2.15 16 8 C -0.11 -1.85 1.55 -11.42 -0.02 -1.87 16 9 H 0.11 1.55 6.38 -2.38 -0.02 1.54 16 10 C 0.52 12.44 5.71 87.66 0.50 12.94 16 11 O -0.58 -17.38 15.05 -3.05 -0.05 -17.42 16 12 N -0.61 -14.17 3.01 -817.94 -2.46 -16.63 16 13 C 0.12 2.76 6.58 86.35 0.57 3.33 16 14 C 0.05 1.10 5.62 86.38 0.49 1.58 16 15 N -0.53 -15.67 4.37 -899.80 -3.93 -19.61 16 16 C 0.06 1.88 5.45 85.56 0.47 2.34 16 17 C 0.44 19.81 7.44 87.66 0.65 20.47 16 18 O -0.61 -31.11 13.91 -3.06 -0.04 -31.15 16 19 N -0.58 -28.28 5.29 -306.98 -1.62 -29.90 16 20 C -0.33 -17.95 9.68 84.04 0.81 -17.13 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -48.84 13.05 21.67 0.28 -48.56 16 24 Si 0.99 41.86 29.55 68.60 2.03 43.88 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 C 0.04 1.19 5.26 86.38 0.45 1.64 16 29 C 0.12 2.70 6.40 86.35 0.55 3.26 16 30 H 0.03 0.80 7.10 -2.39 -0.02 0.78 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.22 6.05 -2.39 -0.01 1.21 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.43 6.15 -2.39 -0.01 1.42 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.17 7.11 -2.38 -0.02 2.15 16 41 H 0.10 2.06 7.99 -2.39 -0.02 2.04 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 3.14 7.97 -2.38 -0.02 3.12 16 44 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 45 H 0.39 18.59 7.90 -92.71 -0.73 17.86 16 46 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 47 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.08 2.95 5.76 -2.39 -0.01 2.94 16 49 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.11 1.86 5.18 -2.39 -0.01 1.85 16 Total: -1.00 -68.52 384.16 -0.50 -69.02 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.22 Total: 35.78 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.60 Total: 22.88 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -7.73 Total: -114.69 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -1.62 Total: -56.87 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -68.52 -0.50 -69.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113315941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -68.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds