Wall clock time and date at job start Tue Mar 31 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51746 * 2 1 4 4 C 1.53090 * 109.52470 * 120.18421 * 2 1 3 5 5 O 1.42902 * 109.41780 * 177.51784 * 4 2 1 6 6 C 1.42908 * 114.09585 * 298.84313 * 5 4 2 7 7 C 1.53090 * 109.41105 * 61.15848 * 6 5 4 8 8 C 1.53171 * 109.52688 * 239.87513 * 2 1 3 9 9 H 1.09007 * 109.54419 * 63.24042 * 8 2 1 10 10 C 1.50711 * 109.54154 * 303.06934 * 8 2 1 11 11 O 1.21273 * 119.99504 * 335.12436 * 10 8 2 12 12 N 1.34775 * 120.00076 * 155.12682 * 10 8 2 13 13 C 1.47082 * 120.87703 * 4.81831 * 12 10 8 14 14 C 1.53700 * 108.27380 * 128.75825 * 13 12 10 15 15 N 1.46896 * 109.25987 * 54.07594 * 14 13 12 16 16 C 1.46904 * 111.00070 * 172.60895 * 15 14 13 17 17 C 1.50702 * 109.46920 * 59.25760 * 16 15 14 18 18 O 1.21287 * 120.00002 * 5.48118 * 17 16 15 19 19 N 1.34778 * 119.99701 * 185.47833 * 17 16 15 20 20 C 1.37092 * 119.99652 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00657 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99782 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99789 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47306 * 89.99872 * 24 22 20 26 26 H 1.48498 * 109.46870 * 210.00006 * 24 22 20 27 27 H 1.48501 * 109.47179 * 329.99744 * 24 22 20 28 28 C 1.46899 * 111.26990 * 296.75946 * 15 14 13 29 29 C 1.47076 * 120.88293 * 185.09209 * 12 10 8 30 30 H 1.09001 * 109.46635 * 175.43535 * 1 2 3 31 31 H 1.08991 * 109.47445 * 295.43587 * 1 2 3 32 32 H 1.09001 * 109.47282 * 55.43941 * 1 2 3 33 33 H 1.09003 * 109.48152 * 297.50358 * 4 2 1 34 34 H 1.09004 * 109.47772 * 57.53171 * 4 2 1 35 35 H 1.08995 * 109.48196 * 301.17677 * 6 5 4 36 36 H 1.08994 * 109.47626 * 181.13819 * 6 5 4 37 37 H 1.09002 * 109.51940 * 182.48456 * 7 6 5 38 38 H 1.09004 * 109.52435 * 62.30011 * 7 6 5 39 39 H 1.09000 * 109.62720 * 248.51415 * 13 12 10 40 40 H 1.08991 * 109.63391 * 9.10225 * 13 12 10 41 41 H 1.09005 * 109.64379 * 294.07106 * 14 13 12 42 42 H 1.09001 * 109.44346 * 173.95761 * 14 13 12 43 43 H 1.08996 * 109.47074 * 179.26492 * 16 15 14 44 44 H 1.08999 * 109.46750 * 299.26127 * 16 15 14 45 45 H 0.96997 * 120.00483 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99461 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.48903 * 303.14260 * 28 15 14 48 48 H 1.09002 * 109.51330 * 183.07907 * 28 15 14 49 49 H 1.09001 * 109.62844 * 350.90178 * 29 12 10 50 50 H 1.09001 * 109.62756 * 111.47309 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7254 1.2472 5 8 3.4695 -0.7748 1.2159 6 6 4.0044 -1.4815 0.0950 7 6 3.5716 -0.7863 -1.1985 8 6 2.0420 -0.7245 -1.2486 9 1 1.7279 -0.1813 -2.1400 10 6 1.4801 -2.1225 -1.2863 11 8 1.1389 -2.6667 -0.2576 12 7 1.3568 -2.7677 -2.4631 13 6 1.8605 -2.1692 -3.7085 14 6 2.7499 -3.2043 -4.4155 15 7 1.9964 -4.4535 -4.5877 16 6 2.7455 -5.4107 -5.4128 17 6 4.0677 -5.7131 -4.7561 18 8 4.3164 -5.2625 -3.6578 19 7 4.9738 -6.4843 -5.3891 20 6 6.1764 -6.7598 -4.7914 21 1 6.3976 -6.3593 -3.8132 22 6 7.1108 -7.5545 -5.4443 23 7 6.8414 -8.0424 -6.6344 24 14 8.7492 -7.9306 -4.6296 25 1 8.6272 -9.1705 -3.8216 26 1 9.7888 -8.1198 -5.6729 27 1 9.1340 -6.8002 -3.7467 28 6 1.6390 -5.0434 -3.2906 29 6 0.7096 -4.0864 -2.5368 30 1 -0.3632 -1.0244 -0.0818 31 1 -0.3634 0.4413 0.9280 32 1 -0.3634 0.5830 -0.8463 33 1 1.7159 -0.1896 2.1388 34 1 1.6432 -1.7399 1.2668 35 1 3.6317 -2.5057 0.0994 36 1 5.0926 -1.4902 0.1564 37 1 3.9417 -1.3488 -2.0557 38 1 3.9781 0.2248 -1.2222 39 1 1.0220 -1.9023 -4.3518 40 1 2.4455 -1.2793 -3.4767 41 1 3.6387 -3.3956 -3.8140 42 1 3.0469 -2.8212 -5.3917 43 1 2.1707 -6.3313 -5.5135 44 1 2.9196 -4.9814 -6.3995 45 1 4.7750 -6.8444 -6.2675 46 1 7.4938 -8.5968 -7.0903 47 1 2.5433 -5.2090 -2.7049 48 1 1.1302 -5.9939 -3.4508 49 1 0.5333 -4.4646 -1.5298 50 1 -0.2375 -4.0002 -3.0695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113315942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:36 Heat of formation + Delta-G solvation = -125.758706 kcal Electronic energy + Delta-G solvation = -31773.510200 eV Core-core repulsion = 27606.980203 eV Total energy + Delta-G solvation = -4166.529998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11651 -40.85825 -39.45884 -38.23443 -36.16762 -35.47733 -35.22722 -33.36859 -33.24170 -32.02432 -30.19749 -28.07829 -27.42539 -26.48714 -25.32693 -24.69337 -23.42399 -22.89010 -21.53382 -21.04952 -20.02820 -19.43472 -18.24695 -17.80427 -17.27180 -17.07446 -16.84707 -16.61764 -16.56402 -16.20029 -16.08546 -15.67691 -15.52050 -15.50028 -15.23950 -15.01658 -14.86621 -14.27605 -14.08651 -13.69392 -13.54847 -13.36783 -13.20200 -13.11309 -12.99698 -12.93307 -12.76857 -12.49843 -12.47183 -12.29586 -12.17437 -12.09357 -12.06008 -11.95136 -11.66104 -11.53827 -11.40805 -10.99895 -10.69874 -10.06058 -10.01845 -9.74751 -9.02965 -8.49322 -5.98808 1.32865 1.38095 1.49604 1.55812 1.96528 1.99829 2.25849 2.91781 2.94665 3.17078 3.24167 3.38161 3.57844 3.69319 3.89559 3.91300 4.00052 4.06767 4.17406 4.24563 4.33443 4.34888 4.45773 4.47424 4.52334 4.58334 4.60572 4.65926 4.68338 4.69280 4.69981 4.74317 4.79913 4.85157 4.93887 5.01053 5.08013 5.12520 5.21791 5.27937 5.35768 5.38858 5.51505 5.80833 5.98820 6.00937 6.21125 6.42765 6.56090 7.09284 7.16358 7.53016 8.08163 8.65978 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.003040 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.949359 B = 9209.635896 C =10390.312939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.102 0.898 4 C 0.038 3.962 5 O -0.397 6.397 6 C 0.057 3.943 7 C -0.140 4.140 8 C -0.104 4.104 9 H 0.126 0.874 10 C 0.518 3.482 11 O -0.571 6.571 12 N -0.610 5.610 13 C 0.117 3.883 14 C 0.021 3.979 15 N -0.496 5.496 16 C 0.050 3.950 17 C 0.407 3.593 18 O -0.623 6.623 19 N -0.569 5.569 20 C -0.332 4.332 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.917 5.917 24 Si 0.987 3.013 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.275 1.275 28 C 0.030 3.970 29 C 0.126 3.874 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.032 0.968 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 16.305 3.344 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.120 0.880 4 C -0.038 4.038 5 O -0.317 6.317 6 C -0.019 4.019 7 C -0.177 4.177 8 C -0.125 4.125 9 H 0.144 0.856 10 C 0.308 3.692 11 O -0.452 6.452 12 N -0.342 5.342 13 C -0.005 4.005 14 C -0.108 4.108 15 N -0.218 5.218 16 C -0.082 4.082 17 C 0.194 3.806 18 O -0.511 6.511 19 N -0.206 5.206 20 C -0.462 4.462 21 H 0.093 0.907 22 C -0.210 4.210 23 N -0.558 5.558 24 Si 0.811 3.189 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.099 4.099 29 C 0.003 3.997 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.050 0.950 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.459 16.389 4.346 21.648 hybrid contribution 1.670 -1.495 0.079 2.243 sum -11.789 14.894 4.425 19.504 Atomic orbital electron populations 1.21791 0.93441 1.01912 1.03118 1.21571 0.97174 0.99963 0.93120 0.87972 1.23234 0.79986 1.02276 0.98341 1.87840 1.21833 1.76094 1.45892 1.22530 0.99309 0.93746 0.86359 1.22145 0.93538 1.03904 0.98145 1.21552 0.96382 0.92254 1.02292 0.85597 1.21086 0.77022 0.88673 0.82424 1.90534 1.52195 1.69379 1.33051 1.48312 1.58304 1.19590 1.08002 1.22143 0.98658 0.95494 0.84213 1.22794 0.96066 0.90383 1.01528 1.62555 1.40292 1.04091 1.14895 1.22175 0.89400 0.98626 0.97993 1.22186 0.88482 0.82535 0.87395 1.90444 1.80653 1.56879 1.23088 1.42120 1.14671 1.44573 1.19213 1.19587 0.93494 1.30222 1.02878 0.90719 1.25972 1.02705 0.96045 0.96280 1.69658 1.37764 1.34450 1.13908 0.85012 0.77397 0.78519 0.77946 1.19916 1.19376 1.19942 1.22568 0.98768 0.97867 0.90694 1.21592 0.95597 0.82044 1.00460 0.93834 0.91320 0.90809 0.88432 0.91329 0.96183 0.88221 0.90575 0.87311 0.88244 0.87606 0.94365 0.88759 0.87209 0.86591 0.76967 0.91253 0.94985 0.89585 0.90651 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.95 71.98 0.64 -1.81 16 2 C -0.10 -1.87 2.67 -10.71 -0.03 -1.90 16 3 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.04 0.93 5.83 72.01 0.42 1.35 16 5 O -0.40 -11.27 10.77 -148.98 -1.60 -12.88 16 6 C 0.06 1.59 6.58 72.01 0.47 2.06 16 7 C -0.14 -2.94 5.35 30.68 0.16 -2.78 16 8 C -0.10 -2.04 1.73 -11.42 -0.02 -2.06 16 9 H 0.13 1.70 6.81 -2.38 -0.02 1.69 16 10 C 0.52 13.79 5.06 87.66 0.44 14.24 16 11 O -0.57 -18.93 11.02 -3.01 -0.03 -18.96 16 12 N -0.61 -15.42 3.00 -817.07 -2.45 -17.87 16 13 C 0.12 2.36 6.16 86.50 0.53 2.89 16 14 C 0.02 0.58 5.13 86.54 0.44 1.02 16 15 N -0.50 -14.16 4.83 -898.88 -4.34 -18.50 16 16 C 0.05 1.55 5.84 85.56 0.50 2.05 16 17 C 0.41 17.91 7.18 87.66 0.63 18.54 16 18 O -0.62 -31.73 11.25 -3.05 -0.03 -31.76 16 19 N -0.57 -27.91 5.29 -306.99 -1.62 -29.53 16 20 C -0.33 -18.39 9.68 84.04 0.81 -17.57 16 21 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 22 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 23 N -0.92 -48.54 13.05 21.67 0.28 -48.26 16 24 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.03 0.93 5.21 86.38 0.45 1.38 16 29 C 0.13 3.35 6.61 86.35 0.57 3.92 16 30 H 0.04 0.96 6.10 -2.39 -0.01 0.95 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.11 5.15 -2.38 -0.01 2.10 16 35 H 0.02 0.68 7.02 -2.39 -0.02 0.66 16 36 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.08 1.71 7.14 -2.39 -0.02 1.69 16 38 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.68 4.91 -2.39 -0.01 1.67 16 41 H 0.04 1.43 5.70 -2.38 -0.01 1.41 16 42 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 43 H 0.11 3.05 8.06 -2.39 -0.02 3.03 16 44 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.03 1.33 5.77 -2.39 -0.01 1.32 16 48 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 49 H 0.08 2.24 7.04 -2.39 -0.02 2.23 16 50 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -70.19 374.08 -1.04 -71.23 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: 0.23 Total: 40.67 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 6.51 Total: 21.28 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -8.13 Total: -114.17 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -1.67 Total: -63.60 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.19 -1.04 -71.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113315942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.532 kcal (2) G-P(sol) polarization free energy of solvation -70.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds