Wall clock time and date at job start Tue Mar 31 2020 23:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46752 * 2 1 4 4 C 1.50693 * 109.47232 * 120.00055 * 2 1 3 5 5 O 1.21278 * 120.00187 * 100.25244 * 4 2 1 6 6 N 1.34775 * 120.00026 * 280.24475 * 4 2 1 7 7 C 1.47088 * 120.86039 * 354.79400 * 6 4 2 8 8 C 1.53244 * 108.51402 * 231.18668 * 7 6 4 9 9 N 1.46892 * 109.36313 * 306.20780 * 8 7 6 10 10 C 1.46901 * 111.00007 * 187.24243 * 9 8 7 11 11 C 1.50699 * 109.47155 * 169.99930 * 10 9 8 12 12 O 1.21289 * 120.00212 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99723 * 179.97438 * 11 10 9 14 14 C 1.37102 * 119.99732 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00166 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99885 * 180.02562 * 14 13 11 17 17 N 1.31406 * 119.99911 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99827 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47181 * 59.99759 * 18 16 14 20 20 H 1.48505 * 109.47203 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47165 * 299.99819 * 18 16 14 22 22 C 1.46898 * 111.26958 * 63.09823 * 9 8 7 23 23 C 1.47079 * 120.88293 * 174.84316 * 6 4 2 24 24 C 1.53004 * 109.46872 * 240.00433 * 2 1 3 25 25 H 1.08997 * 109.86502 * 298.98447 * 24 2 1 26 26 C 1.54098 * 109.88031 * 59.99630 * 24 2 1 27 27 C 1.54809 * 104.18703 * 121.45239 * 26 24 2 28 28 C 1.54997 * 102.09290 * 20.87984 * 27 26 24 29 29 O 1.43740 * 109.87552 * 177.82775 * 24 2 1 30 30 H 1.08990 * 109.47625 * 53.30272 * 1 2 3 31 31 H 1.08998 * 109.46722 * 173.30487 * 1 2 3 32 32 H 1.08999 * 109.47028 * 293.30033 * 1 2 3 33 33 H 1.08995 * 109.60787 * 111.49485 * 7 6 4 34 34 H 1.08998 * 109.64956 * 350.90625 * 7 6 4 35 35 H 1.09007 * 109.49080 * 186.23567 * 8 7 6 36 36 H 1.09001 * 109.49330 * 66.19010 * 8 7 6 37 37 H 1.09001 * 109.47349 * 290.00154 * 10 9 8 38 38 H 1.09004 * 109.47505 * 50.00257 * 10 9 8 39 39 H 0.96999 * 120.00652 * 0.02562 * 13 11 10 40 40 H 0.97002 * 119.99963 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49591 * 56.85252 * 22 9 8 42 42 H 1.09002 * 109.49423 * 176.91040 * 22 9 8 43 43 H 1.09003 * 109.63056 * 9.07430 * 23 6 4 44 44 H 1.09003 * 109.78501 * 248.59015 * 23 6 4 45 45 H 1.09001 * 110.48380 * 240.12944 * 26 24 2 46 46 H 1.08994 * 110.49047 * 2.64601 * 26 24 2 47 47 H 1.09003 * 110.90391 * 139.07377 * 27 26 24 48 48 H 1.08994 * 110.91045 * 262.64374 * 27 26 24 49 49 H 1.08999 * 110.61846 * 81.47375 * 28 27 26 50 50 H 1.08998 * 110.61889 * 204.31799 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4108 -1.8601 1.1548 6 7 2.0613 -0.0680 2.4148 7 6 1.7154 1.3586 2.5080 8 6 2.8361 2.0829 3.2615 9 7 3.0688 1.4143 4.5486 10 6 4.0142 2.1770 5.3747 11 6 4.0414 1.6023 6.7675 12 8 3.3424 0.6506 7.0446 13 7 4.8433 2.1452 7.7050 14 6 4.8684 1.6219 8.9720 15 1 4.2460 0.7745 9.2187 16 6 5.6947 2.1820 9.9386 17 7 6.4524 3.2127 9.6382 18 14 5.7283 1.4695 11.6651 19 1 6.1568 0.0488 11.6061 20 1 6.6845 2.2402 12.5001 21 1 4.3709 1.5528 12.2615 22 6 3.5330 0.0340 4.3558 23 6 2.4406 -0.7745 3.6478 24 6 2.0400 -0.7212 -1.2493 25 1 1.6951 -1.7551 -1.2469 26 6 1.5314 -0.0021 -2.5138 27 6 2.8226 0.3896 -3.2728 28 6 3.8622 -0.5908 -2.6724 29 8 3.4765 -0.6821 -1.2841 30 1 -0.3634 0.6140 -0.8239 31 1 -0.3633 -1.0207 -0.1198 32 1 -0.3633 0.4065 0.9438 33 1 0.7767 1.4727 3.0501 34 1 1.6168 1.7780 1.5068 35 1 2.5460 3.1189 3.4370 36 1 3.7497 2.0568 2.6675 37 1 5.0106 2.1160 4.9369 38 1 3.6997 3.2198 5.4181 39 1 5.4026 2.9060 7.4833 40 1 7.0289 3.6039 10.3131 41 1 4.4368 0.0359 3.7465 42 1 3.7487 -0.4160 5.3249 43 1 2.8211 -1.7654 3.3998 44 1 1.5730 -0.8683 4.3010 45 1 0.9235 -0.6760 -3.1174 46 1 0.9608 0.8865 -2.2439 47 1 2.7083 0.2269 -4.3445 48 1 3.0973 1.4237 -3.0653 49 1 3.7936 -1.5659 -3.1547 50 1 4.8702 -0.1870 -2.7674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113317951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:10 Heat of formation + Delta-G solvation = -128.704582 kcal Electronic energy + Delta-G solvation = -30408.988427 eV Core-core repulsion = 26242.330687 eV Total energy + Delta-G solvation = -4166.657741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66014 -40.55895 -39.91752 -38.57489 -36.09263 -35.53629 -34.91841 -33.27339 -32.84306 -32.06826 -30.22972 -28.83070 -27.43690 -26.01531 -25.24508 -24.62903 -23.33249 -22.30958 -21.33391 -21.00443 -19.94734 -19.82734 -18.52892 -17.82242 -17.44293 -16.96993 -16.80719 -16.61490 -16.50054 -16.14454 -16.03682 -15.98968 -15.42167 -15.29826 -15.27489 -14.81212 -14.52245 -14.32286 -14.13539 -13.92657 -13.51892 -13.27537 -13.23286 -12.98665 -12.90705 -12.83120 -12.61407 -12.50181 -12.43486 -12.34988 -12.24712 -12.16767 -12.08415 -12.03062 -11.93500 -11.45722 -11.44992 -10.70584 -10.62813 -10.32894 -10.00167 -9.75928 -9.24067 -8.45870 -5.94155 1.39622 1.41437 1.52133 1.62195 1.91396 2.06336 2.28564 2.71774 2.89641 3.20859 3.35461 3.44023 3.59874 3.76816 3.91086 3.96708 3.98112 4.07376 4.11208 4.14204 4.21151 4.27928 4.34153 4.42096 4.45324 4.49006 4.54320 4.57567 4.62687 4.74698 4.80030 4.81589 4.83659 4.86850 4.87162 4.93896 5.01138 5.04796 5.16348 5.24844 5.29090 5.41464 5.42848 5.79800 6.01669 6.02218 6.14094 6.43574 6.61477 7.13821 7.15478 7.57508 8.13304 8.71276 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.002061 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.814400 B =13582.877258 C =13756.946527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.120 0.880 4 C 0.516 3.484 5 O -0.586 6.586 6 N -0.613 5.613 7 C 0.112 3.888 8 C 0.036 3.964 9 N -0.527 5.527 10 C 0.059 3.941 11 C 0.441 3.559 12 O -0.613 6.613 13 N -0.574 5.574 14 C -0.331 4.331 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.920 5.920 18 Si 0.992 3.008 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.051 3.949 23 C 0.129 3.871 24 C 0.088 3.912 25 H 0.051 0.949 26 C -0.144 4.144 27 C -0.148 4.148 28 C 0.032 3.968 29 O -0.403 6.403 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.037 0.963 37 H 0.061 0.939 38 H 0.121 0.879 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 2.364 -27.996 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 H 0.138 0.862 4 C 0.306 3.694 5 O -0.466 6.466 6 N -0.346 5.346 7 C -0.010 4.010 8 C -0.091 4.091 9 N -0.252 5.252 10 C -0.072 4.072 11 C 0.228 3.772 12 O -0.499 6.499 13 N -0.212 5.212 14 C -0.461 4.461 15 H 0.097 0.903 16 C -0.214 4.214 17 N -0.561 5.561 18 Si 0.815 3.185 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.196 1.196 22 C -0.078 4.078 23 C 0.005 3.995 24 C 0.030 3.970 25 H 0.069 0.931 26 C -0.182 4.182 27 C -0.185 4.185 28 C -0.044 4.044 29 O -0.323 6.323 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.117 0.883 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.181 1.221 -27.307 29.533 hybrid contribution 1.567 -0.341 0.788 1.787 sum -9.614 0.880 -26.519 28.221 Atomic orbital electron populations 1.21801 0.89360 1.03495 1.04855 1.21610 0.99361 1.01169 0.90264 0.86184 1.21281 0.76655 0.86486 0.85003 1.90655 1.49637 1.20450 1.85878 1.48326 1.67438 1.12106 1.06724 1.22171 0.98162 0.78074 1.02598 1.22700 0.98370 0.99797 0.88278 1.61501 1.46206 1.01560 1.15944 1.21742 0.95969 0.99235 0.90275 1.20770 0.82646 0.85912 0.87874 1.90465 1.46013 1.31148 1.82296 1.41934 1.38608 1.30881 1.09776 1.19604 1.24222 1.14687 0.87548 0.90336 1.26021 0.95343 0.96418 1.03578 1.69662 1.26440 1.23241 1.36802 0.85009 0.78346 0.78120 0.76982 1.19931 1.19514 1.19630 1.22378 0.95289 0.90100 1.00045 1.21403 0.97718 0.95453 0.84881 1.22657 0.81049 0.98481 0.94792 0.93052 1.23068 0.98637 1.02095 0.94368 1.23132 0.93875 1.00147 1.01364 1.23762 1.00177 0.99256 0.81208 1.88956 1.21465 1.95185 1.26724 0.87658 0.92745 0.90786 0.89399 0.85795 0.86491 0.94461 0.92096 0.86151 0.77029 0.91341 0.96017 0.90617 0.90779 0.91033 0.89169 0.87701 0.88254 0.89756 0.92314 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.74 71.98 0.63 -0.84 16 2 C -0.10 -1.74 1.56 -11.54 -0.02 -1.76 16 3 H 0.12 1.50 6.31 -2.39 -0.02 1.49 16 4 C 0.52 14.13 6.60 87.66 0.58 14.71 16 5 O -0.59 -21.78 15.33 -1.68 -0.03 -21.80 16 6 N -0.61 -15.96 3.01 -817.92 -2.46 -18.42 16 7 C 0.11 2.01 5.91 86.35 0.51 2.52 16 8 C 0.04 0.78 5.62 86.39 0.49 1.26 16 9 N -0.53 -16.72 4.37 -899.81 -3.93 -20.65 16 10 C 0.06 2.00 5.45 85.56 0.47 2.47 16 11 C 0.44 20.87 7.44 87.66 0.65 21.53 16 12 O -0.61 -33.62 13.91 -3.06 -0.04 -33.66 16 13 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 14 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 15 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 16 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 17 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 18 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.05 1.79 5.26 86.38 0.45 2.25 16 23 C 0.13 4.16 6.61 86.35 0.57 4.73 16 24 C 0.09 1.65 2.51 30.97 0.08 1.72 16 25 H 0.05 1.19 7.88 -2.39 -0.02 1.17 16 26 C -0.14 -1.33 6.10 31.58 0.19 -1.14 16 27 C -0.15 -1.33 7.15 31.90 0.23 -1.11 16 28 C 0.03 0.50 7.72 72.67 0.56 1.06 16 29 O -0.40 -9.94 10.74 -147.64 -1.59 -11.52 16 30 H 0.10 0.44 6.75 -2.39 -0.02 0.42 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.75 7.60 -2.39 -0.02 0.73 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.12 1.29 5.53 -2.39 -0.01 1.28 16 35 H 0.12 1.84 7.99 -2.38 -0.02 1.82 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 38 H 0.12 3.39 7.97 -2.39 -0.02 3.38 16 39 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 40 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 3.27 5.76 -2.39 -0.01 3.26 16 43 H 0.07 2.61 7.04 -2.39 -0.02 2.60 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.10 0.51 6.49 -2.39 -0.02 0.49 16 47 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -79.27 390.64 -0.47 -79.74 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.22 Total: 32.54 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 6.67 Total: 29.08 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -7.74 Total: -119.73 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.65 Total: -66.98 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.27 -0.47 -79.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113317951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.966 kcal (2) G-P(sol) polarization free energy of solvation -79.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds