Wall clock time and date at job start Tue Mar 31 2020 23:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.50703 * 109.46860 * 240.00671 * 2 1 3 5 5 O 1.21276 * 120.00021 * 264.51083 * 4 2 1 6 6 N 1.34781 * 120.00025 * 84.51173 * 4 2 1 7 7 C 1.47080 * 120.88234 * 354.61520 * 6 4 2 8 8 C 1.53696 * 108.27715 * 128.75113 * 7 6 4 9 9 N 1.46897 * 109.25744 * 54.08463 * 8 7 6 10 10 C 1.46892 * 111.00210 * 172.60804 * 9 8 7 11 11 C 1.50704 * 109.47251 * 59.34541 * 10 9 8 12 12 O 1.21285 * 119.99909 * 5.62583 * 11 10 9 13 13 N 1.34773 * 119.99867 * 185.62396 * 11 10 9 14 14 C 1.37093 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00335 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00512 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99502 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00408 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47136 * 89.99204 * 18 16 14 20 20 H 1.48493 * 109.47134 * 209.99938 * 18 16 14 21 21 H 1.48502 * 109.46740 * 329.99703 * 18 16 14 22 22 C 1.46904 * 111.26675 * 296.75433 * 9 8 7 23 23 C 1.47082 * 120.87951 * 174.89084 * 6 4 2 24 24 C 1.52994 * 109.47207 * 120.00790 * 2 1 3 25 25 H 1.08998 * 109.82671 * 60.56506 * 24 2 1 26 26 C 1.54383 * 109.82971 * 299.58492 * 24 2 1 27 27 C 1.55303 * 102.25294 * 219.13506 * 26 24 2 28 28 C 1.54948 * 100.94280 * 34.13278 * 27 26 24 29 29 O 1.43239 * 109.82579 * 181.45308 * 24 2 1 30 30 H 1.09003 * 109.46989 * 184.64783 * 1 2 3 31 31 H 1.08994 * 109.46687 * 304.64078 * 1 2 3 32 32 H 1.09000 * 109.47381 * 64.64700 * 1 2 3 33 33 H 1.09001 * 109.62272 * 248.52144 * 7 6 4 34 34 H 1.09001 * 109.62863 * 9.09395 * 7 6 4 35 35 H 1.08997 * 109.64716 * 294.08076 * 8 7 6 36 36 H 1.09004 * 109.41737 * 173.94720 * 8 7 6 37 37 H 1.09005 * 109.47352 * 179.34977 * 10 9 8 38 38 H 1.09005 * 109.47273 * 299.34670 * 10 9 8 39 39 H 0.96997 * 120.00553 * 359.97438 * 13 11 10 40 40 H 0.97004 * 119.99927 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.49327 * 303.14759 * 22 9 8 42 42 H 1.09005 * 109.49160 * 183.06423 * 22 9 8 43 43 H 1.08998 * 109.62745 * 350.89200 * 23 6 4 44 44 H 1.08992 * 109.62945 * 111.48271 * 23 6 4 45 45 H 1.09003 * 110.84592 * 337.32131 * 26 24 2 46 46 H 1.08994 * 110.84500 * 100.94356 * 26 24 2 47 47 H 1.09002 * 111.12344 * 276.21367 * 27 26 24 48 48 H 1.08998 * 111.16467 * 152.07205 * 27 26 24 49 49 H 1.09006 * 110.30742 * 204.64079 * 28 27 26 50 50 H 1.09000 * 110.39511 * 82.51926 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3291 -1.8848 -1.1741 6 7 2.1517 -0.0402 -2.3939 7 6 1.6880 1.3503 -2.5152 8 6 2.8303 2.1892 -3.1098 9 7 3.2809 1.5736 -4.3651 10 6 4.2498 2.4350 -5.0557 11 6 5.4407 2.6685 -4.1622 12 8 5.5265 2.0864 -3.1016 13 7 6.4103 3.5243 -4.5416 14 6 7.4939 3.7364 -3.7290 15 1 7.5704 3.2181 -2.7846 16 6 8.4934 4.6190 -4.1198 17 7 8.4001 5.2501 -5.2687 18 14 9.9695 4.9085 -3.0122 19 1 11.0399 3.9363 -3.3498 20 1 10.4748 6.2905 -3.2120 21 1 9.5669 4.7289 -1.5941 22 6 3.8391 0.2350 -4.1319 23 6 2.7436 -0.6821 -3.5775 24 6 2.0400 -0.7214 1.2491 25 1 1.6882 -1.7530 1.2498 26 6 1.5386 0.0058 2.5152 27 6 2.7719 -0.0806 3.4551 28 6 3.9301 0.0215 2.4308 29 8 3.4720 -0.6963 1.2740 30 1 -0.3633 -1.0243 0.0833 31 1 -0.3632 0.5841 0.8455 32 1 -0.3634 0.4400 -0.9287 33 1 0.8195 1.3905 -3.1726 34 1 1.4233 1.7352 -1.5304 35 1 3.6611 2.2286 -2.4053 36 1 2.4726 3.1996 -3.3080 37 1 4.5757 1.9502 -5.9761 38 1 3.7817 3.3901 -5.2943 39 1 6.3419 3.9896 -5.3899 40 1 9.0980 5.8660 -5.5418 41 1 4.6558 0.3016 -3.4131 42 1 4.2131 -0.1719 -5.0714 43 1 3.1774 -1.6414 -3.2953 44 1 1.9747 -0.8334 -4.3350 45 1 1.2915 1.0441 2.2940 46 1 0.6839 -0.5138 2.9481 47 1 2.7974 -1.0338 3.9832 48 1 2.7922 0.7543 4.1556 49 1 4.8315 -0.4423 2.8315 50 1 4.1224 1.0641 2.1776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113317954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:18 Heat of formation + Delta-G solvation = -130.792696 kcal Electronic energy + Delta-G solvation = -31267.431652 eV Core-core repulsion = 27100.683364 eV Total energy + Delta-G solvation = -4166.748288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70005 -40.79883 -39.93911 -38.36930 -36.15420 -35.42301 -34.83137 -33.34135 -32.93331 -32.03596 -30.17257 -28.96177 -27.42422 -25.99296 -25.12147 -24.64789 -23.15730 -22.44140 -21.53425 -21.04242 -20.09065 -19.63908 -18.53535 -17.80162 -17.63973 -17.19806 -16.86205 -16.60938 -16.36450 -16.21942 -16.07471 -15.69656 -15.53767 -15.42148 -15.20012 -14.92245 -14.47572 -14.29017 -13.98654 -13.61535 -13.54084 -13.30757 -13.18316 -13.09953 -12.97936 -12.78334 -12.58096 -12.48542 -12.47442 -12.28803 -12.18402 -12.14883 -12.07849 -12.02008 -11.98809 -11.66343 -11.41544 -11.01195 -10.66423 -10.51270 -10.02253 -9.75538 -9.04342 -8.49535 -5.99206 1.32640 1.37410 1.49347 1.62454 1.98859 2.00466 2.25890 2.87184 2.93872 3.16538 3.23733 3.44090 3.53501 3.68323 3.92542 3.93236 4.01701 4.09554 4.14418 4.17106 4.26839 4.33239 4.35452 4.40143 4.49635 4.57080 4.58980 4.60462 4.67874 4.71297 4.76557 4.78228 4.82671 4.87872 4.89647 4.99174 5.02654 5.10184 5.22289 5.26216 5.29956 5.38145 5.48120 5.80448 5.97816 5.99730 6.12733 6.43584 6.56060 7.09066 7.17336 7.52372 8.08363 8.65839 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003204 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.749993 B = 8736.564878 C =10422.853963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 H 0.100 0.900 4 C 0.518 3.482 5 O -0.586 6.586 6 N -0.613 5.613 7 C 0.119 3.881 8 C 0.020 3.980 9 N -0.495 5.495 10 C 0.050 3.950 11 C 0.406 3.594 12 O -0.624 6.624 13 N -0.568 5.568 14 C -0.334 4.334 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.916 5.916 18 Si 0.988 3.012 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.275 1.275 22 C 0.031 3.969 23 C 0.127 3.873 24 C 0.090 3.910 25 H 0.071 0.929 26 C -0.138 4.138 27 C -0.146 4.146 28 C 0.033 3.967 29 O -0.412 6.412 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.034 0.966 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.030 0.970 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 -4.608 9.767 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.140 4.140 3 H 0.118 0.882 4 C 0.308 3.692 5 O -0.467 6.467 6 N -0.346 5.346 7 C -0.003 4.003 8 C -0.108 4.108 9 N -0.217 5.217 10 C -0.082 4.082 11 C 0.193 3.807 12 O -0.512 6.512 13 N -0.205 5.205 14 C -0.464 4.464 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.557 5.557 18 Si 0.812 3.188 19 H -0.199 1.199 20 H -0.192 1.192 21 H -0.200 1.200 22 C -0.098 4.098 23 C 0.004 3.996 24 C 0.032 3.968 25 H 0.089 0.911 26 C -0.176 4.176 27 C -0.183 4.183 28 C -0.043 4.043 29 O -0.332 6.332 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.127 0.873 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.099 0.901 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.526 -5.603 9.923 22.608 hybrid contribution 2.257 0.513 0.316 2.336 sum -17.269 -5.090 10.239 20.711 Atomic orbital electron populations 1.21756 0.88870 1.03622 1.04848 1.21825 1.00045 1.00456 0.91675 0.88241 1.21129 0.76554 0.86672 0.84869 1.90621 1.52338 1.18283 1.85427 1.48274 1.60666 1.14822 1.10821 1.22159 0.96432 0.78848 1.02849 1.22802 0.97746 0.98742 0.91545 1.62561 1.34837 1.01907 1.22435 1.22187 0.89089 1.00292 0.96600 1.22213 0.86838 0.82490 0.89176 1.90465 1.80376 1.53070 1.27290 1.42106 1.18905 1.39008 1.20502 1.19587 0.99392 1.24700 1.02684 0.90901 1.25976 1.01331 0.95578 0.98056 1.69657 1.36083 1.28477 1.21493 0.85004 0.77694 0.78074 0.78033 1.19878 1.19178 1.20041 1.22568 0.96421 0.89841 1.00981 1.21567 0.95810 0.95304 0.86964 1.22743 0.80419 0.99329 0.94316 0.91080 1.23219 0.99256 1.02372 0.92725 1.23254 0.92949 1.04367 0.97771 1.23595 0.98802 0.96305 0.85568 1.88564 1.21737 1.76177 1.46689 0.92133 0.88112 0.90583 0.88027 0.87601 0.94774 0.88513 0.87097 0.86409 0.76914 0.91206 0.95175 0.89349 0.91259 0.88924 0.88585 0.87321 0.89889 0.87554 0.90051 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.65 71.98 0.62 -1.23 16 2 C -0.12 -2.70 1.51 -11.54 -0.02 -2.72 16 3 H 0.10 2.19 6.51 -2.39 -0.02 2.17 16 4 C 0.52 16.56 6.53 87.66 0.57 17.13 16 5 O -0.59 -23.64 15.49 -3.01 -0.05 -23.68 16 6 N -0.61 -18.08 3.00 -817.04 -2.45 -20.54 16 7 C 0.12 2.73 5.96 86.50 0.52 3.24 16 8 C 0.02 0.61 5.13 86.54 0.44 1.06 16 9 N -0.50 -15.26 4.83 -898.85 -4.34 -19.60 16 10 C 0.05 1.64 5.84 85.56 0.50 2.14 16 11 C 0.41 18.61 7.18 87.66 0.63 19.24 16 12 O -0.62 -33.47 11.25 -3.05 -0.03 -33.50 16 13 N -0.57 -28.65 5.29 -306.99 -1.62 -30.27 16 14 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 15 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 16 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 17 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 18 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 C 0.03 1.05 5.21 86.38 0.45 1.50 16 23 C 0.13 3.86 6.58 86.35 0.57 4.43 16 24 C 0.09 2.17 2.64 31.06 0.08 2.25 16 25 H 0.07 1.91 7.86 -2.39 -0.02 1.89 16 26 C -0.14 -1.95 5.55 31.85 0.18 -1.78 16 27 C -0.15 -2.21 7.16 32.05 0.23 -1.98 16 28 C 0.03 0.80 7.78 72.65 0.56 1.37 16 29 O -0.41 -13.49 10.62 -148.97 -1.58 -15.07 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.80 7.22 -2.39 -0.02 0.78 16 32 H 0.08 0.92 7.39 -2.39 -0.02 0.90 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 1.94 5.25 -2.39 -0.01 1.92 16 35 H 0.03 1.39 5.71 -2.39 -0.01 1.37 16 36 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 37 H 0.11 3.24 8.07 -2.38 -0.02 3.22 16 38 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 39 H 0.40 18.95 7.90 -92.71 -0.73 18.21 16 40 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.03 1.36 5.76 -2.39 -0.01 1.34 16 42 H 0.09 2.72 8.05 -2.38 -0.02 2.70 16 43 H 0.07 2.39 7.10 -2.39 -0.02 2.37 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.10 1.06 7.56 -2.39 -0.02 1.05 16 46 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 50 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -78.81 386.50 -0.93 -79.74 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: 0.22 Total: 39.99 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 6.62 Total: 26.53 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -8.13 Total: -119.20 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -1.66 Total: -72.25 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -78.81 -0.93 -79.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113317954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.056 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds