Wall clock time and date at job start Tue Mar 31 2020 23:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.53000 * 109.47185 * 180.02562 * 3 2 1 5 5 C 1.52990 * 109.47211 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47508 * 54.99477 * 5 4 3 7 7 C 1.53001 * 109.47023 * 294.99355 * 5 4 3 8 8 C 1.50703 * 109.47398 * 174.99677 * 5 4 3 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 5 4 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 5 12 12 H 1.09004 * 115.51982 * 350.14327 * 11 10 8 13 13 C 1.53005 * 117.44191 * 204.71985 * 11 10 8 14 14 H 1.09001 * 119.52274 * 5.65060 * 13 11 10 15 15 C 1.54377 * 118.12385 * 160.68214 * 13 11 10 16 16 N 1.48556 * 104.59439 * 87.23559 * 15 13 11 17 17 C 1.46895 * 111.00170 * 200.95515 * 16 15 13 18 18 C 1.50706 * 109.47498 * 189.99874 * 17 16 15 19 19 O 1.21291 * 119.99551 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99973 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99552 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99663 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99981 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00198 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47161 * 90.00117 * 25 23 21 27 27 H 1.48508 * 109.47190 * 210.00162 * 25 23 21 28 28 H 1.48507 * 109.47236 * 330.00160 * 25 23 21 29 29 C 1.48562 * 104.22048 * 320.51284 * 16 15 13 30 30 C 1.52999 * 117.44391 * 135.49708 * 11 10 8 31 31 H 1.09000 * 119.52999 * 355.89725 * 30 11 10 32 32 H 1.08998 * 109.47327 * 60.00181 * 1 2 3 33 33 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46984 * 299.99878 * 1 2 3 35 35 H 1.08997 * 109.47082 * 59.99631 * 3 2 1 36 36 H 1.09006 * 109.47056 * 299.99906 * 3 2 1 37 37 H 1.08997 * 109.47295 * 59.99386 * 4 3 2 38 38 H 1.09006 * 109.46681 * 299.99688 * 4 3 2 39 39 H 1.08992 * 109.47503 * 300.00327 * 7 5 4 40 40 H 1.08998 * 109.46818 * 60.00401 * 7 5 4 41 41 H 1.09008 * 109.47076 * 179.97438 * 7 5 4 42 42 H 0.97001 * 119.99727 * 359.97438 * 10 8 5 43 43 H 1.09000 * 110.41086 * 206.00755 * 15 13 11 44 44 H 1.08996 * 110.41604 * 328.45332 * 15 13 11 45 45 H 1.08997 * 109.47417 * 310.00037 * 17 16 15 46 46 H 1.09002 * 109.47230 * 69.99642 * 17 16 15 47 47 H 0.96990 * 120.00514 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00147 * 180.02562 * 24 23 21 49 49 H 1.09005 * 110.41117 * 158.26414 * 29 16 15 50 50 H 1.08996 * 110.40936 * 280.58341 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7674 3.1535 0.8422 7 6 3.8079 3.2969 -1.3069 8 6 5.6552 2.4655 0.1233 9 8 6.1735 1.3719 0.2033 10 7 6.4182 3.5762 0.1457 11 6 7.8744 3.4623 0.2594 12 1 8.2510 2.4654 0.4885 13 6 8.6310 4.6546 0.8485 14 1 8.0724 5.5015 1.2470 15 6 10.0540 4.4145 1.3968 16 7 10.9424 4.5811 0.2178 17 6 12.2354 3.9186 0.4351 18 6 13.1913 4.3103 -0.6621 19 8 12.8308 5.0667 -1.5391 20 7 14.4465 3.8194 -0.6694 21 6 15.3163 4.1762 -1.6673 22 1 14.9956 4.8503 -2.4477 23 6 16.6104 3.6706 -1.6745 24 7 17.4443 4.0129 -2.6307 25 14 17.1654 2.5052 -0.3243 26 1 16.8820 1.1054 -0.7311 27 1 18.6239 2.6690 -0.0975 28 1 16.4317 2.8145 0.9292 29 6 10.1960 3.9399 -0.8952 30 6 8.7244 4.3424 -0.6592 31 1 8.2361 4.9679 -1.4065 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6886 1.8464 0.8899 36 1 1.6886 1.8464 -0.8900 37 1 3.8568 0.6438 -0.8908 38 1 3.8574 0.6436 0.8892 39 1 4.1983 2.7258 -2.1491 40 1 2.7249 3.3815 -1.3960 41 1 4.2509 4.2929 -1.3062 42 1 6.0036 4.4508 0.0821 43 1 10.2959 5.1519 2.1622 44 1 10.1413 3.4052 1.7989 45 1 12.6431 4.2245 1.3986 46 1 12.0957 2.8376 0.4265 47 1 14.7347 3.2143 0.0317 48 1 18.3476 3.6597 -2.6360 49 1 10.5448 4.3200 -1.8554 50 1 10.3073 2.8565 -0.8530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115266662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:16 Heat of formation + Delta-G solvation = -76.174027 kcal Electronic energy + Delta-G solvation = -28652.246085 eV Core-core repulsion = 24487.866240 eV Total energy + Delta-G solvation = -4164.379845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70697 -39.67885 -38.39903 -38.06852 -35.38991 -35.21283 -33.90422 -32.66645 -31.61712 -29.70970 -28.40489 -27.76288 -26.82110 -25.53238 -24.53458 -22.92350 -21.74475 -21.09656 -20.39214 -20.07865 -19.29588 -18.23895 -17.70524 -17.14885 -16.72861 -16.50486 -15.92323 -15.62963 -15.34583 -15.24420 -14.97002 -14.76198 -14.39707 -14.25364 -13.72008 -13.55693 -13.49621 -13.26870 -13.10145 -12.90239 -12.59912 -12.39165 -12.34730 -12.19491 -12.12450 -11.81461 -11.76664 -11.50166 -11.42244 -11.38833 -11.35177 -11.13602 -10.85999 -10.57587 -10.20486 -10.14194 -10.03774 -9.95203 -9.53198 -9.01477 -8.61396 -8.16262 -8.09042 -6.28526 -3.79817 2.22689 2.55697 3.04763 3.08971 3.17063 3.30655 3.51859 3.76994 3.94040 4.12243 4.13344 4.35573 4.42592 4.45405 4.53984 4.67737 4.70852 4.72293 4.82465 4.87559 4.87925 4.91127 4.95926 5.05720 5.17885 5.18436 5.23120 5.24391 5.27913 5.45057 5.49481 5.55256 5.62064 5.66045 5.71641 5.72534 5.82823 5.90328 5.95485 5.98872 6.21377 6.32889 6.68437 6.96412 7.07460 7.11133 7.61059 7.86487 8.17023 8.63248 8.98121 9.45350 9.86732 10.84707 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.001622 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.152559 B =17259.526504 C =17605.163639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.102 4.102 5 C -0.106 4.106 6 H 0.100 0.900 7 C -0.150 4.150 8 C 0.522 3.478 9 O -0.531 6.531 10 N -0.699 5.699 11 C 0.104 3.896 12 H 0.133 0.867 13 C -0.167 4.167 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.483 5.483 17 C 0.031 3.969 18 C 0.455 3.545 19 O -0.558 6.558 20 N -0.593 5.593 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.067 3.933 30 C -0.161 4.161 31 H 0.119 0.881 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.402 0.598 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.053 0.947 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.104 0.896 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.430 -2.969 9.842 34.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.140 4.140 5 C -0.127 4.127 6 H 0.118 0.882 7 C -0.207 4.207 8 C 0.309 3.691 9 O -0.406 6.406 10 N -0.348 5.348 11 C -0.003 4.003 12 H 0.151 0.849 13 C -0.188 4.188 14 H 0.137 0.863 15 C -0.068 4.068 16 N -0.207 5.207 17 C -0.101 4.101 18 C 0.240 3.760 19 O -0.439 6.439 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.523 5.523 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.060 4.060 30 C -0.181 4.181 31 H 0.137 0.863 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.237 0.763 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.071 0.929 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.122 0.878 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -31.836 -2.877 9.091 33.233 hybrid contribution 0.142 -0.938 1.205 1.534 sum -31.694 -3.814 10.296 33.542 Atomic orbital electron populations 1.22752 0.80914 1.02910 0.99945 1.87898 1.19753 1.27930 1.95403 1.22605 0.93971 0.84803 1.00239 1.21289 0.92323 0.95163 1.05189 1.21203 0.91772 0.98805 1.00945 0.88153 1.21887 1.02577 1.00347 0.95895 1.20550 0.89086 0.84019 0.75464 1.90739 1.74813 1.26614 1.48479 1.45288 1.05677 1.09258 1.74574 1.21812 0.78947 0.97239 1.02282 0.84927 1.23811 0.97479 1.00144 0.97322 0.86284 1.22659 0.89484 1.00464 0.94160 1.65285 1.01176 1.51590 1.02621 1.22099 0.91168 0.97028 0.99820 1.19579 0.82848 0.85346 0.88207 1.90551 1.76606 1.37668 1.39110 1.42204 1.11373 1.43815 1.25866 1.19425 0.91730 1.27605 1.04484 0.86289 1.25021 0.95773 0.98005 0.97321 1.69619 1.06464 1.44019 1.32163 0.86683 0.79290 0.81681 0.81798 1.19671 1.20191 1.19499 1.22676 0.89002 0.96637 0.97714 1.23999 0.96776 1.03692 0.93657 0.86311 0.94042 0.89532 0.94063 0.93295 0.92942 0.90126 0.90037 0.91498 0.91141 0.91806 0.76318 0.89298 0.93603 0.89030 0.92874 0.79752 0.91655 0.87782 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.32 10.70 -35.23 -0.38 -3.70 16 3 C 0.06 0.38 5.69 37.16 0.21 0.59 16 4 C -0.10 -0.78 4.40 -26.74 -0.12 -0.90 16 5 C -0.11 -0.64 2.72 -91.77 -0.25 -0.89 16 6 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 7 C -0.15 -0.67 8.84 37.16 0.33 -0.34 16 8 C 0.52 5.02 7.15 -10.98 -0.08 4.94 16 9 O -0.53 -7.49 15.49 5.55 0.09 -7.40 16 10 N -0.70 -5.69 5.46 -53.80 -0.29 -5.98 16 11 C 0.10 1.09 5.97 -67.93 -0.41 0.68 16 12 H 0.13 1.66 7.40 -51.93 -0.38 1.28 16 13 C -0.17 -1.72 7.05 -89.24 -0.63 -2.35 16 14 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.06 0.72 6.26 -2.19 -0.01 0.71 16 16 N -0.48 -7.72 4.98 -231.41 -1.15 -8.87 16 17 C 0.03 0.52 5.32 -4.98 -0.03 0.49 16 18 C 0.45 10.43 7.63 -10.98 -0.08 10.34 16 19 O -0.56 -15.03 14.80 5.55 0.08 -14.94 16 20 N -0.59 -14.26 5.09 -10.96 -0.06 -14.31 16 21 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 25 Si 0.88 19.56 27.74 -169.99 -4.71 14.85 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 C 0.07 1.03 5.73 -2.18 -0.01 1.02 16 30 C -0.16 -1.89 7.05 -89.24 -0.63 -2.52 16 31 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.05 0.25 6.57 -51.93 -0.34 -0.09 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.22 6.57 -51.93 -0.34 -0.12 16 41 H 0.06 0.21 7.57 -51.92 -0.39 -0.18 16 42 H 0.40 2.09 8.25 -40.82 -0.34 1.76 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 45 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 46 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 47 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.10 1.89 7.24 -51.93 -0.38 1.52 16 50 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -36.10 405.43 -8.63 -44.73 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.24 Total: 9.42 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.84 Total: 5.29 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.73 Total: -54.35 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.21 Total: -26.04 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.10 -8.63 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115266662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.447 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds