Wall clock time and date at job start Tue Mar 31 2020 23:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.53000 * 109.47185 * 180.02562 * 3 2 1 5 5 C 1.52990 * 109.47211 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47508 * 54.99477 * 5 4 3 7 7 C 1.53001 * 109.47023 * 294.99355 * 5 4 3 8 8 C 1.50703 * 109.47398 * 174.99677 * 5 4 3 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 5 4 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 5 12 12 H 1.09004 * 115.51982 * 350.14327 * 11 10 8 13 13 C 1.53005 * 117.44191 * 204.71985 * 11 10 8 14 14 H 1.09001 * 119.52274 * 5.65060 * 13 11 10 15 15 C 1.54377 * 118.12385 * 160.68214 * 13 11 10 16 16 N 1.48556 * 104.59439 * 87.23559 * 15 13 11 17 17 C 1.46895 * 111.00170 * 200.95515 * 16 15 13 18 18 C 1.50706 * 109.47498 * 189.99874 * 17 16 15 19 19 O 1.21291 * 119.99551 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99973 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99552 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99663 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99981 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00198 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47161 * 90.00117 * 25 23 21 27 27 H 1.48508 * 109.47190 * 210.00162 * 25 23 21 28 28 H 1.48507 * 109.47236 * 330.00160 * 25 23 21 29 29 C 1.48562 * 104.22048 * 320.51284 * 16 15 13 30 30 C 1.52999 * 117.44391 * 135.49708 * 11 10 8 31 31 H 1.09000 * 119.52999 * 355.89725 * 30 11 10 32 32 H 1.08998 * 109.47327 * 60.00181 * 1 2 3 33 33 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46984 * 299.99878 * 1 2 3 35 35 H 1.08997 * 109.47082 * 59.99631 * 3 2 1 36 36 H 1.09006 * 109.47056 * 299.99906 * 3 2 1 37 37 H 1.08997 * 109.47295 * 59.99386 * 4 3 2 38 38 H 1.09006 * 109.46681 * 299.99688 * 4 3 2 39 39 H 1.08992 * 109.47503 * 300.00327 * 7 5 4 40 40 H 1.08998 * 109.46818 * 60.00401 * 7 5 4 41 41 H 1.09008 * 109.47076 * 179.97438 * 7 5 4 42 42 H 0.97001 * 119.99727 * 359.97438 * 10 8 5 43 43 H 1.09000 * 110.41086 * 206.00755 * 15 13 11 44 44 H 1.08996 * 110.41604 * 328.45332 * 15 13 11 45 45 H 1.08997 * 109.47417 * 310.00037 * 17 16 15 46 46 H 1.09002 * 109.47230 * 69.99642 * 17 16 15 47 47 H 0.96990 * 120.00514 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00147 * 180.02562 * 24 23 21 49 49 H 1.09005 * 110.41117 * 158.26414 * 29 16 15 50 50 H 1.08996 * 110.40936 * 280.58341 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7674 3.1535 0.8422 7 6 3.8079 3.2969 -1.3069 8 6 5.6552 2.4655 0.1233 9 8 6.1735 1.3719 0.2033 10 7 6.4182 3.5762 0.1457 11 6 7.8744 3.4623 0.2594 12 1 8.2510 2.4654 0.4885 13 6 8.6310 4.6546 0.8485 14 1 8.0724 5.5015 1.2470 15 6 10.0540 4.4145 1.3968 16 7 10.9424 4.5811 0.2178 17 6 12.2354 3.9186 0.4351 18 6 13.1913 4.3103 -0.6621 19 8 12.8308 5.0667 -1.5391 20 7 14.4465 3.8194 -0.6694 21 6 15.3163 4.1762 -1.6673 22 1 14.9956 4.8503 -2.4477 23 6 16.6104 3.6706 -1.6745 24 7 17.4443 4.0129 -2.6307 25 14 17.1654 2.5052 -0.3243 26 1 16.8820 1.1054 -0.7311 27 1 18.6239 2.6690 -0.0975 28 1 16.4317 2.8145 0.9292 29 6 10.1960 3.9399 -0.8952 30 6 8.7244 4.3424 -0.6592 31 1 8.2361 4.9679 -1.4065 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6886 1.8464 0.8899 36 1 1.6886 1.8464 -0.8900 37 1 3.8568 0.6438 -0.8908 38 1 3.8574 0.6436 0.8892 39 1 4.1983 2.7258 -2.1491 40 1 2.7249 3.3815 -1.3960 41 1 4.2509 4.2929 -1.3062 42 1 6.0036 4.4508 0.0821 43 1 10.2959 5.1519 2.1622 44 1 10.1413 3.4052 1.7989 45 1 12.6431 4.2245 1.3986 46 1 12.0957 2.8376 0.4265 47 1 14.7347 3.2143 0.0317 48 1 18.3476 3.6597 -2.6360 49 1 10.5448 4.3200 -1.8554 50 1 10.3073 2.8565 -0.8530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115266662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:15 Heat of formation + Delta-G solvation = -106.096476 kcal Electronic energy + Delta-G solvation = -28653.543620 eV Core-core repulsion = 24487.866240 eV Total energy + Delta-G solvation = -4165.677380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59708 -40.70732 -39.81445 -38.87343 -36.43721 -35.89955 -35.83066 -33.82519 -33.54903 -30.23338 -29.44532 -29.14441 -27.22113 -26.59375 -25.81516 -23.92187 -22.62365 -22.00525 -21.41136 -21.17857 -20.75287 -20.15778 -18.38229 -18.00713 -17.65111 -17.24006 -17.01003 -16.85506 -16.34716 -16.28988 -16.25007 -15.82395 -15.45024 -15.08171 -14.89355 -14.82466 -14.74440 -14.40759 -14.07612 -13.97775 -13.88424 -13.54049 -13.39557 -13.13037 -12.99906 -12.76782 -12.60466 -12.52078 -12.43696 -12.41564 -12.21292 -11.98483 -11.92044 -11.88856 -11.86454 -11.50178 -11.11295 -10.87318 -10.56281 -10.41483 -10.24508 -9.83218 -9.39161 -8.41451 -6.02197 1.29624 1.34926 1.43718 1.48252 1.84032 1.95858 2.22561 2.58445 2.70886 2.86181 3.14593 3.22869 3.49889 3.63115 3.65742 3.82403 3.88046 3.98306 4.04672 4.17062 4.19995 4.27799 4.31900 4.33549 4.40549 4.45014 4.47503 4.51989 4.56394 4.57533 4.61301 4.78927 4.86114 4.89124 4.90782 4.91984 5.01221 5.10838 5.12185 5.23881 5.32716 5.43823 5.52380 5.79211 5.87814 5.99858 6.26830 6.46794 6.59876 6.88355 7.18036 7.39796 7.97306 8.76292 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.001622 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.152559 B =17259.526504 C =17605.163639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.061 3.939 4 C -0.100 4.100 5 C -0.094 4.094 6 H 0.134 0.866 7 C -0.148 4.148 8 C 0.518 3.482 9 O -0.583 6.583 10 N -0.683 5.683 11 C 0.112 3.888 12 H 0.112 0.888 13 C -0.145 4.145 14 H 0.149 0.851 15 C 0.058 3.942 16 N -0.508 5.508 17 C 0.042 3.958 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.593 5.593 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.231 1.231 29 C 0.066 3.934 30 C -0.172 4.172 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.420 0.580 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.061 0.939 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.792 -3.031 13.410 37.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.115 4.115 6 H 0.151 0.849 7 C -0.205 4.205 8 C 0.306 3.694 9 O -0.463 6.463 10 N -0.334 5.334 11 C 0.005 3.995 12 H 0.130 0.870 13 C -0.164 4.164 14 H 0.166 0.834 15 C -0.069 4.069 16 N -0.232 5.232 17 C -0.089 4.089 18 C 0.240 3.760 19 O -0.490 6.490 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.783 3.217 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.154 1.154 29 C -0.062 4.062 30 C -0.193 4.193 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.259 0.741 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.143 0.857 46 H 0.096 0.904 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -34.248 -2.898 12.678 36.634 hybrid contribution 0.817 -0.854 -0.024 1.182 sum -33.431 -3.752 12.654 35.942 Atomic orbital electron populations 1.22917 0.79350 1.03657 1.01102 1.87852 1.21630 1.29417 1.95677 1.22669 0.92462 0.84379 1.01946 1.21234 0.93920 0.95825 1.02840 1.21201 0.88786 0.98327 1.03188 0.84853 1.21917 1.04023 1.00557 0.94014 1.21262 0.90618 0.83354 0.74132 1.90723 1.75969 1.28649 1.50919 1.45157 1.04563 1.10001 1.73638 1.21539 0.80127 0.96386 1.01464 0.87005 1.23907 0.96793 1.00443 0.95305 0.83386 1.22780 0.89366 1.01859 0.92852 1.65217 1.01539 1.52023 1.04431 1.22014 0.90307 0.98541 0.98072 1.20845 0.82982 0.83491 0.88689 1.90532 1.77516 1.39558 1.41415 1.42033 1.11362 1.44607 1.25522 1.19003 0.93527 1.28103 1.05093 0.92693 1.26084 0.94944 0.99730 1.00467 1.69801 1.07190 1.45709 1.34848 0.85384 0.78917 0.78494 0.78857 1.18374 1.19890 1.15393 1.22513 0.91486 0.96144 0.96069 1.23839 0.95036 1.05108 0.95270 0.85511 0.92885 0.89171 0.92817 0.91366 0.91212 0.92652 0.92336 0.93338 0.89071 0.90065 0.74150 0.87456 0.92378 0.85746 0.90374 0.77553 0.91162 0.91997 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.43 -6.90 10.70 -148.98 -1.59 -8.50 16 3 C 0.06 0.66 5.69 71.98 0.41 1.06 16 4 C -0.10 -1.49 4.40 30.59 0.13 -1.36 16 5 C -0.09 -0.93 2.72 -11.54 -0.03 -0.96 16 6 H 0.13 0.50 8.14 -2.39 -0.02 0.49 16 7 C -0.15 -0.93 8.84 71.98 0.64 -0.29 16 8 C 0.52 9.34 7.15 87.66 0.63 9.97 16 9 O -0.58 -16.75 15.49 -3.04 -0.05 -16.80 16 10 N -0.68 -9.55 5.46 -442.52 -2.41 -11.96 16 11 C 0.11 2.16 5.97 44.99 0.27 2.43 16 12 H 0.11 2.73 7.40 -2.38 -0.02 2.71 16 13 C -0.14 -2.52 7.05 -9.90 -0.07 -2.59 16 14 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.06 1.21 6.26 86.45 0.54 1.75 16 16 N -0.51 -15.57 4.98 -886.06 -4.41 -19.98 16 17 C 0.04 1.34 5.32 85.56 0.46 1.80 16 18 C 0.45 21.02 7.63 87.66 0.67 21.69 16 19 O -0.61 -34.42 14.80 -3.06 -0.05 -34.46 16 20 N -0.59 -28.65 5.09 -306.98 -1.56 -30.22 16 21 C -0.33 -19.58 10.16 84.04 0.85 -18.73 16 22 H 0.05 3.90 7.39 -2.91 -0.02 3.88 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 25 Si 0.96 39.48 27.74 68.60 1.90 41.39 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.23 -7.95 6.52 99.48 0.65 -7.31 16 29 C 0.07 2.05 5.73 86.45 0.50 2.55 16 30 C -0.17 -3.87 7.05 -9.90 -0.07 -3.94 16 31 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.49 6.57 -2.38 -0.02 0.47 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.12 7.95 -2.38 -0.02 1.10 16 39 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.09 0.23 6.57 -2.39 -0.02 0.22 16 41 H 0.08 0.25 7.57 -2.38 -0.02 0.23 16 42 H 0.42 2.84 8.25 -92.71 -0.76 2.08 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 45 H 0.12 3.19 8.08 -2.39 -0.02 3.17 16 46 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 47 H 0.39 15.57 5.76 -92.72 -0.53 15.04 16 48 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.06 2.42 7.24 -2.38 -0.02 2.41 16 50 H 0.04 1.24 7.75 -2.39 -0.02 1.22 16 Total: -1.00 -87.83 405.43 -1.63 -89.47 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.40 Total: 33.32 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.64 Total: 14.55 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -8.08 Total: -118.97 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -1.69 Total: -59.76 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.39 kcal Total: -87.83 -1.63 -89.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115266662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.630 kcal (2) G-P(sol) polarization free energy of solvation -87.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds