Wall clock time and date at job start Tue Mar 31 2020 23:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47122 * 2 1 4 4 C 1.53001 * 109.47109 * 240.00433 * 2 1 3 5 5 N 1.46502 * 109.46972 * 294.38558 * 4 2 1 6 6 C 1.34775 * 119.99992 * 174.96292 * 5 4 2 7 7 O 1.21344 * 119.99794 * 0.02562 * 6 5 4 8 8 C 1.49451 * 119.99712 * 179.97438 * 6 5 4 9 9 O 1.21344 * 120.00493 * 0.02562 * 8 6 5 10 10 N 1.34775 * 119.99712 * 179.97438 * 8 6 5 11 11 C 1.47432 * 125.64882 * 359.69089 * 10 8 6 12 12 C 1.55135 * 104.72019 * 155.81854 * 11 10 8 13 13 C 1.55158 * 101.48779 * 37.29699 * 12 11 10 14 14 O 1.42897 * 110.71852 * 82.69293 * 13 12 11 15 15 C 1.50689 * 110.87218 * 205.89891 * 13 12 11 16 16 H 1.08000 * 120.00026 * 355.06058 * 15 13 12 17 17 C 1.37882 * 120.00337 * 175.06548 * 15 13 12 18 18 N 1.31518 * 119.99450 * 359.97438 * 17 15 13 19 19 Si 1.86789 * 120.00524 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47267 * 119.99852 * 19 17 15 22 22 H 1.48499 * 109.47388 * 239.99984 * 19 17 15 23 23 C 1.47023 * 125.65174 * 180.02562 * 10 8 6 24 24 N 1.46899 * 109.47272 * 120.00268 * 2 1 3 25 25 C 1.46900 * 111.00077 * 171.94433 * 24 2 1 26 26 C 1.46899 * 110.99811 * 295.89437 * 24 2 1 27 27 C 1.52999 * 117.50061 * 243.74849 * 26 24 2 28 28 C 1.52998 * 117.49911 * 175.08829 * 26 24 2 29 29 H 1.09001 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46861 * 299.99504 * 1 2 3 31 31 H 1.08996 * 109.47091 * 60.00097 * 1 2 3 32 32 H 1.09001 * 109.46955 * 174.38745 * 4 2 1 33 33 H 1.08995 * 109.47388 * 54.38124 * 4 2 1 34 34 H 0.97007 * 119.99845 * 354.96016 * 5 4 2 35 35 H 1.08995 * 110.36648 * 274.74997 * 11 10 8 36 36 H 1.08997 * 110.36297 * 37.07295 * 11 10 8 37 37 H 1.09002 * 111.19159 * 279.18983 * 12 11 10 38 38 H 1.08995 * 110.90292 * 155.28023 * 12 11 10 39 39 H 0.96699 * 114.00207 * 185.02548 * 14 13 12 40 40 H 0.96996 * 120.00017 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.88471 * 300.44487 * 23 10 8 42 42 H 1.09009 * 109.87923 * 61.44800 * 23 10 8 43 43 H 1.09000 * 109.47039 * 54.46075 * 25 24 2 44 44 H 1.09001 * 109.47046 * 174.46181 * 25 24 2 45 45 H 1.09000 * 109.46785 * 294.46475 * 25 24 2 46 46 H 1.09002 * 115.55023 * 29.41670 * 26 24 2 47 47 H 1.09005 * 117.49876 * 359.97438 * 27 26 24 48 48 H 1.09002 * 117.50426 * 145.02146 * 27 26 24 49 49 H 1.09001 * 117.50039 * 214.98175 * 28 26 24 50 50 H 1.08999 * 117.49993 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6651 -2.1359 -1.1837 6 6 1.9209 -2.9499 -2.2270 7 8 2.4622 -2.5110 -3.2204 8 6 1.5390 -4.3932 -2.1598 9 8 0.9981 -4.8321 -1.1662 10 7 1.7943 -5.2070 -3.2033 11 6 2.4359 -4.8062 -4.4687 12 6 3.0506 -6.1150 -5.0309 13 6 1.9711 -7.1575 -4.6369 14 8 0.9074 -7.1691 -5.5911 15 6 2.5760 -8.5307 -4.4989 16 1 3.6146 -8.6908 -4.7480 17 6 1.8035 -9.5829 -4.0547 18 7 0.5389 -9.3879 -3.7509 19 14 2.5531 -11.2853 -3.8842 20 1 3.9822 -11.2394 -4.2856 21 1 2.4504 -11.7323 -2.4718 22 1 1.8231 -12.2376 -4.7591 23 6 1.4730 -6.6401 -3.2710 24 7 2.0197 -0.6925 1.1994 25 6 3.4754 -0.8808 1.1411 26 6 1.6305 0.0279 2.4190 27 6 2.7510 0.6011 3.2889 28 6 1.9651 -0.6243 3.7619 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1254 -0.6349 -1.3010 33 1 1.5969 -0.2687 -2.1364 34 1 1.2328 -2.4868 -0.3894 35 1 1.6943 -4.4053 -5.1596 36 1 3.2178 -4.0704 -4.2811 37 1 4.0039 -6.3398 -4.5525 38 1 3.1624 -6.0584 -6.1136 39 1 0.1705 -7.7477 -5.3517 40 1 -0.0047 -10.1281 -3.4388 41 1 1.9799 -7.1722 -2.4660 42 1 0.3954 -6.7827 -3.1883 43 1 3.9599 0.0814 0.9754 44 1 3.8247 -1.3062 2.0819 45 1 3.7218 -1.5573 0.3227 46 1 0.7033 0.5972 2.3531 47 1 3.7771 0.4433 2.9565 48 1 2.5609 1.5472 3.7957 49 1 1.2582 -0.4839 4.5797 50 1 2.4744 -1.5878 3.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118217680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:18 Heat of formation + Delta-G solvation = -69.940774 kcal Electronic energy + Delta-G solvation = -30601.948516 eV Core-core repulsion = 26437.838965 eV Total energy + Delta-G solvation = -4164.109551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46439 -39.58289 -38.34499 -37.15645 -36.22612 -34.35667 -33.26570 -32.22921 -31.03513 -30.10129 -28.00763 -27.59907 -25.91287 -25.52427 -23.65229 -22.70151 -22.10542 -21.44802 -19.84163 -19.70472 -19.39388 -17.37121 -17.28947 -17.13704 -16.47621 -15.90173 -15.76565 -15.29147 -15.19855 -14.78006 -14.64001 -14.44300 -14.11737 -13.94467 -13.53379 -13.02148 -12.93633 -12.90157 -12.87863 -12.64568 -12.34002 -12.29490 -11.98252 -11.84345 -11.72476 -11.56702 -11.51200 -11.36891 -11.07808 -11.00281 -10.92861 -10.73669 -10.64707 -10.56535 -10.45934 -10.14755 -9.31777 -9.15121 -9.05337 -8.66460 -8.52494 -8.31866 -7.96547 -6.28872 -4.37141 1.85128 2.69701 3.20601 3.23173 3.29554 3.33258 3.62341 3.66503 4.00936 4.27881 4.29193 4.49419 4.56974 4.64839 4.72240 4.79185 4.88176 4.93872 4.99735 5.16933 5.28140 5.34162 5.39826 5.44449 5.47890 5.53153 5.54947 5.66679 5.72930 5.79935 5.83819 5.91039 5.94989 6.08445 6.21297 6.41241 6.55106 6.63406 6.70558 6.77985 6.85410 6.87505 7.22194 7.30033 7.40801 7.72828 7.94274 8.05839 8.09826 8.49979 8.67251 9.29572 9.38351 10.79034 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.002448 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.707055 B =11433.589476 C =12137.882868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.061 0.939 4 C 0.124 3.876 5 N -0.695 5.695 6 C 0.509 3.491 7 O -0.523 6.523 8 C 0.506 3.494 9 O -0.536 6.536 10 N -0.577 5.577 11 C 0.099 3.901 12 C -0.121 4.121 13 C 0.247 3.753 14 O -0.583 6.583 15 C -0.535 4.535 16 H 0.068 0.932 17 C 0.069 3.931 18 N -0.895 5.895 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.101 3.899 24 N -0.505 5.505 25 C 0.015 3.985 26 C 0.020 3.980 27 C -0.221 4.221 28 C -0.169 4.169 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.420 0.580 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.382 0.618 40 H 0.270 0.730 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.121 0.879 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 20.350 10.421 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 H 0.079 0.921 4 C -0.001 4.001 5 N -0.350 5.350 6 C 0.290 3.710 7 O -0.399 6.399 8 C 0.288 3.712 9 O -0.415 6.415 10 N -0.309 5.309 11 C -0.023 4.023 12 C -0.159 4.159 13 C 0.207 3.793 14 O -0.392 6.392 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.134 4.134 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.020 4.020 24 N -0.228 5.228 25 C -0.133 4.133 26 C -0.089 4.089 27 C -0.260 4.260 28 C -0.207 4.207 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.258 0.742 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.232 0.768 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.318 20.328 10.024 22.784 hybrid contribution 0.113 -0.704 0.942 1.181 sum 2.431 19.624 10.966 22.611 Atomic orbital electron populations 1.21912 0.93288 1.03424 1.01971 1.21954 0.96758 0.96030 0.89116 0.92098 1.21501 1.00305 0.80963 0.97290 1.45666 1.61157 1.08910 1.19303 1.20424 0.79552 0.87694 0.83316 1.90689 1.41379 1.76663 1.31154 1.19582 0.81723 0.86276 0.83643 1.90731 1.43278 1.76382 1.31078 1.48700 1.55815 1.11635 1.14762 1.22672 0.97266 0.97945 0.84401 1.22855 0.98526 0.93503 1.00972 1.19529 0.84255 0.92521 0.83024 1.86127 1.32927 1.70332 1.49808 1.21540 0.97736 0.92714 1.45361 0.91389 1.25088 0.94907 0.99730 0.93649 1.69703 1.06347 1.32783 1.44507 0.86338 0.79463 0.83235 0.77816 1.19579 1.20789 1.20742 1.23210 1.01242 0.75450 1.02093 1.61870 1.13125 1.47237 1.00555 1.22577 0.86923 1.00478 1.03319 1.22695 0.98733 0.99988 0.87504 1.23587 0.98162 0.98319 1.05918 1.23073 1.03298 0.97299 0.97018 0.91176 0.92196 0.91677 0.91244 0.90195 0.74172 0.91446 0.89525 0.90469 0.90403 0.76817 0.92043 0.90979 0.91106 0.94962 0.90981 0.90555 0.86123 0.88276 0.88962 0.88472 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.04 37.16 0.34 -0.78 16 2 C 0.07 0.55 2.33 -67.71 -0.16 0.39 16 3 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 4 C 0.12 1.23 4.53 -4.04 -0.02 1.21 16 5 N -0.69 -9.04 4.80 -60.73 -0.29 -9.33 16 6 C 0.51 8.52 7.86 -11.59 -0.09 8.43 16 7 O -0.52 -9.31 13.77 5.50 0.08 -9.24 16 8 C 0.51 10.22 7.91 -11.59 -0.09 10.13 16 9 O -0.54 -11.87 16.80 5.50 0.09 -11.78 16 10 N -0.58 -12.34 3.32 -170.88 -0.57 -12.91 16 11 C 0.10 1.95 6.07 -2.40 -0.01 1.93 16 12 C -0.12 -2.50 6.24 -24.46 -0.15 -2.65 16 13 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 14 O -0.58 -14.72 13.07 -35.23 -0.46 -15.18 16 15 C -0.54 -13.97 8.13 -34.44 -0.28 -14.25 16 16 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 17 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 18 N -0.89 -23.66 10.96 55.43 0.61 -23.05 16 19 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.10 2.45 5.23 -3.06 -0.02 2.43 16 24 N -0.51 -4.31 4.18 -226.91 -0.95 -5.26 16 25 C 0.01 0.12 7.44 60.06 0.45 0.57 16 26 C 0.02 0.15 5.81 -67.71 -0.39 -0.25 16 27 C -0.22 -1.46 9.53 -26.69 -0.25 -1.72 16 28 C -0.17 -1.24 9.97 -26.70 -0.27 -1.50 16 29 H 0.07 0.65 7.34 -51.93 -0.38 0.27 16 30 H 0.06 0.39 6.31 -51.93 -0.33 0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.69 6.79 -51.93 -0.35 0.34 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.42 5.57 6.90 -40.82 -0.28 5.29 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.59 6.14 -51.93 -0.32 1.27 16 37 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.38 9.78 7.45 45.56 0.34 10.11 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.07 1.88 7.81 -51.93 -0.41 1.47 16 42 H 0.07 1.85 7.92 -51.92 -0.41 1.43 16 43 H 0.03 0.24 7.58 -51.93 -0.39 -0.16 16 44 H 0.07 0.59 6.24 -51.93 -0.32 0.26 16 45 H 0.08 0.74 6.46 -51.93 -0.34 0.41 16 46 H 0.12 0.80 6.22 -51.93 -0.32 0.47 16 47 H 0.10 0.67 5.92 -51.93 -0.31 0.36 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.10 0.81 7.57 -51.93 -0.39 0.41 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -28.93 391.78 -8.87 -37.80 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.14 Total: 16.07 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -1.12 Total: 11.59 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.20 Total: -50.56 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.29 Total: -36.20 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.93 -8.87 -37.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.145 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds