Wall clock time and date at job start Tue Mar 31 2020 23:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47548 * 2 1 4 4 O 1.42898 * 109.47327 * 120.00308 * 2 1 3 5 5 C 1.52998 * 109.47217 * 240.00261 * 2 1 3 6 6 N 1.46496 * 109.47415 * 183.41249 * 5 2 1 7 7 C 1.34773 * 120.00038 * 94.67284 * 6 5 2 8 8 O 1.21351 * 120.00231 * 175.24142 * 7 6 5 9 9 C 1.49455 * 120.00096 * 355.23923 * 7 6 5 10 10 O 1.21349 * 119.99905 * 5.07358 * 9 7 6 11 11 N 1.34778 * 119.99994 * 185.07341 * 9 7 6 12 12 C 1.46504 * 119.99485 * 179.97438 * 11 9 7 13 13 C 1.53037 * 109.46093 * 274.74996 * 12 11 9 14 14 C 1.53190 * 109.30971 * 178.60469 * 13 12 11 15 15 N 1.46919 * 108.76617 * 54.65783 * 14 13 12 16 16 C 1.36940 * 120.63003 * 126.36293 * 15 14 13 17 17 H 1.08004 * 119.99874 * 324.61981 * 16 15 14 18 18 C 1.38808 * 120.00089 * 144.62421 * 16 15 14 19 19 N 1.31615 * 120.00464 * 4.09994 * 18 16 15 20 20 Si 1.86805 * 120.00116 * 184.10343 * 18 16 15 21 21 H 1.48507 * 109.47022 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47143 * 119.99520 * 20 18 16 23 23 H 1.48498 * 109.47139 * 239.99755 * 20 18 16 24 24 C 1.46923 * 118.73931 * 306.37901 * 15 14 13 25 25 C 1.53039 * 109.45406 * 154.69815 * 12 11 9 26 26 C 1.46504 * 120.00116 * 274.67275 * 6 5 2 27 27 C 1.53002 * 117.49930 * 197.51415 * 26 6 5 28 28 C 1.52996 * 117.50115 * 128.85278 * 26 6 5 29 29 H 1.09002 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46849 * 299.99868 * 1 2 3 31 31 H 1.08998 * 109.47824 * 59.99437 * 1 2 3 32 32 H 0.96695 * 114.00153 * 63.81897 * 4 2 1 33 33 H 1.09007 * 109.47206 * 63.41412 * 5 2 1 34 34 H 1.08999 * 109.47220 * 303.41821 * 5 2 1 35 35 H 0.96997 * 119.99955 * 359.72552 * 11 9 7 36 36 H 1.08995 * 109.46293 * 34.73037 * 12 11 9 37 37 H 1.08997 * 109.50144 * 298.57302 * 13 12 11 38 38 H 1.09001 * 109.49730 * 58.66808 * 13 12 11 39 39 H 1.09003 * 109.59787 * 294.86760 * 14 13 12 40 40 H 1.09002 * 109.70099 * 174.50863 * 14 13 12 41 41 H 0.96997 * 120.00816 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.59197 * 293.82387 * 24 15 14 43 43 H 1.09007 * 109.70549 * 173.46590 * 24 15 14 44 44 H 1.09007 * 109.50205 * 301.33752 * 25 12 11 45 45 H 1.09004 * 109.49893 * 61.43483 * 25 12 11 46 46 H 1.09001 * 115.54974 * 343.17910 * 26 6 5 47 47 H 1.09001 * 117.49823 * 0.02562 * 27 26 6 48 48 H 1.09005 * 117.49615 * 145.01671 * 27 26 6 49 49 H 1.08998 * 117.50245 * 214.98127 * 28 26 6 50 50 H 1.09003 * 117.49860 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5026 -0.7928 -1.2089 7 6 4.1102 -1.8889 -0.7130 8 8 5.3190 -1.9855 -0.7585 9 6 3.2952 -2.9854 -0.1071 10 8 2.0834 -2.9321 -0.1440 11 7 3.9061 -4.0334 0.4801 12 6 3.1071 -5.1080 1.0745 13 6 2.7221 -4.7254 2.5054 14 6 1.8578 -5.8355 3.1115 15 7 2.5801 -7.1101 3.0016 16 6 2.7884 -7.8915 4.1068 17 1 2.9710 -7.4315 5.0667 18 6 2.7650 -9.2747 3.9932 19 7 2.6232 -9.8357 2.8111 20 14 2.9346 -10.3401 5.5182 21 1 3.0808 -9.4724 6.7145 22 1 1.7248 -11.1885 5.6664 23 1 4.1335 -11.2063 5.3860 24 6 3.0751 -7.5303 1.6837 25 6 3.9256 -6.4010 1.0934 26 6 4.3049 0.3270 -1.7076 27 6 5.7767 0.0554 -2.0251 28 6 5.3987 0.8764 -0.7897 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.7700 -1.6106 1.2040 33 1 1.7274 -0.1732 -2.1382 34 1 1.6275 -1.7296 -1.2805 35 1 4.8747 -4.0780 0.5060 36 1 2.2039 -5.2586 0.4833 37 1 3.6244 -4.5990 3.1036 38 1 2.1593 -3.7919 2.4935 39 1 0.9147 -5.9019 2.5689 40 1 1.6609 -5.6163 4.1609 41 1 2.6065 -10.8023 2.7317 42 1 2.2314 -7.7350 1.0247 43 1 3.6831 -8.4289 1.7888 44 1 4.2196 -6.6605 0.0764 45 1 4.8165 -6.2588 1.7051 46 1 3.7762 1.0383 -2.3421 47 1 6.1480 -0.9566 -1.8633 48 1 6.2164 0.5883 -2.8682 49 1 5.5899 1.9490 -0.8205 50 1 5.5212 0.4049 0.1855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118340042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:29 Heat of formation + Delta-G solvation = -44.287815 kcal Electronic energy + Delta-G solvation = -31432.805024 eV Core-core repulsion = 27269.807869 eV Total energy + Delta-G solvation = -4162.997155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32834 -39.32317 -38.02440 -37.32559 -36.45409 -34.72420 -33.93942 -32.21690 -31.15720 -30.21252 -29.52233 -26.72730 -25.83372 -24.62131 -22.74992 -22.49898 -22.24025 -21.95068 -21.19922 -20.13428 -19.18724 -18.03230 -17.02849 -16.89755 -16.54426 -16.18154 -16.04343 -15.51980 -15.24005 -14.91788 -14.54401 -14.45339 -14.11882 -13.88023 -13.75567 -13.54650 -13.35541 -13.05234 -12.71010 -12.67923 -12.44987 -12.39324 -12.07977 -11.85801 -11.65766 -11.56474 -11.14421 -10.95548 -10.93922 -10.85353 -10.68474 -10.49917 -10.44955 -10.33028 -10.24047 -10.03671 -9.94533 -9.69242 -9.13710 -8.95616 -8.64984 -8.49476 -6.61780 -5.83639 -3.36584 1.29627 2.16904 3.06170 3.27782 3.34776 3.42545 3.44188 3.71375 4.22269 4.39233 4.44709 4.52863 4.63472 4.75018 4.85397 4.90849 5.02853 5.11888 5.25535 5.32122 5.35285 5.41752 5.50616 5.53729 5.55183 5.59080 5.74786 5.75861 5.84169 5.98743 6.01653 6.05026 6.17384 6.25302 6.43045 6.46024 6.48317 6.54686 6.69619 6.76299 6.85787 6.92896 7.25820 7.33450 7.65219 7.69472 7.73493 7.75693 8.02091 8.48203 9.19866 9.78192 10.37425 11.22908 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.002679 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.101369 B =10450.356075 C =11193.276503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.096 3.904 3 H 0.090 0.910 4 O -0.568 6.568 5 C 0.044 3.956 6 N -0.547 5.547 7 C 0.513 3.487 8 O -0.517 6.517 9 C 0.513 3.487 10 O -0.530 6.530 11 N -0.681 5.681 12 C 0.146 3.854 13 C -0.140 4.140 14 C 0.149 3.851 15 N -0.594 5.594 16 C -0.254 4.254 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.905 5.905 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.171 3.829 25 C -0.150 4.150 26 C 0.063 3.937 27 C -0.196 4.196 28 C -0.184 4.184 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.381 0.619 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.409 0.591 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.019 0.981 43 H 0.106 0.894 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.131 0.869 47 H 0.145 0.855 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 20.340 -11.122 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.036 3.964 3 H 0.108 0.892 4 O -0.380 6.380 5 C -0.078 4.078 6 N -0.277 5.277 7 C 0.297 3.703 8 O -0.394 6.394 9 C 0.294 3.706 10 O -0.412 6.412 11 N -0.330 5.330 12 C 0.043 3.957 13 C -0.180 4.180 14 C 0.022 3.978 15 N -0.317 5.317 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.044 3.956 25 C -0.190 4.190 26 C -0.041 4.041 27 C -0.233 4.233 28 C -0.223 4.223 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.245 0.755 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.124 0.876 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.148 0.852 47 H 0.163 0.837 48 H 0.108 0.892 49 H 0.115 0.885 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.584 20.663 -11.048 23.438 hybrid contribution 0.204 -0.814 0.513 0.983 sum 0.788 19.849 -10.535 22.486 Atomic orbital electron populations 1.22404 0.95853 1.03271 1.02415 1.22091 0.93102 0.96180 0.85054 0.89180 1.86515 1.79897 1.29113 1.42459 1.23419 0.78208 1.07322 0.98865 1.46976 1.07225 1.14951 1.58526 1.20280 0.87693 0.83257 0.79106 1.90535 1.13811 1.79098 1.55942 1.20072 0.87927 0.83258 0.79299 1.90390 1.13967 1.77875 1.58922 1.46345 1.11803 1.20621 1.54224 1.21332 0.94757 0.85301 0.94261 1.22406 1.01133 0.99437 0.95010 1.20886 0.92628 0.85935 0.98398 1.44043 1.62398 1.19984 1.05286 1.19206 1.43103 0.87534 0.88519 0.91729 1.25322 0.99575 0.97394 0.96659 1.69865 1.53927 1.09732 1.21385 0.86200 0.77267 0.80435 0.82782 1.20202 1.21469 1.21652 1.20961 0.95281 0.94387 0.84953 1.22637 1.00094 0.95685 1.00560 1.21812 0.88372 0.91537 1.02367 1.24108 0.95310 1.05303 0.98554 1.23256 1.02865 0.99691 0.96481 0.91472 0.91703 0.91851 0.76552 0.90217 0.84252 0.75476 0.89390 0.92034 0.92674 0.96086 0.92381 0.93475 0.96329 0.87588 0.92608 0.91993 0.85183 0.83742 0.89233 0.88459 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.56 37.15 0.36 -1.18 16 2 C 0.10 0.96 3.86 -26.74 -0.10 0.86 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 O -0.57 -7.59 12.31 -55.01 -0.68 -8.27 16 5 C 0.04 0.42 4.92 -4.04 -0.02 0.40 16 6 N -0.55 -6.04 2.72 -166.61 -0.45 -6.49 16 7 C 0.51 6.78 7.15 -11.58 -0.08 6.70 16 8 O -0.52 -7.43 12.38 5.50 0.07 -7.36 16 9 C 0.51 7.04 6.87 -11.58 -0.08 6.96 16 10 O -0.53 -7.44 10.06 -14.28 -0.14 -7.58 16 11 N -0.68 -9.50 5.07 -54.20 -0.27 -9.77 16 12 C 0.15 2.36 2.42 -67.89 -0.16 2.19 16 13 C -0.14 -2.38 5.65 -26.61 -0.15 -2.53 16 14 C 0.15 3.02 6.52 -3.72 -0.02 3.00 16 15 N -0.59 -14.33 3.00 -172.32 -0.52 -14.85 16 16 C -0.25 -6.76 9.55 -15.06 -0.14 -6.91 16 17 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 18 C 0.01 0.24 5.32 -17.43 -0.09 0.15 16 19 N -0.90 -25.31 10.62 55.49 0.59 -24.72 16 20 Si 0.90 21.19 29.56 -169.99 -5.02 16.17 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.17 3.87 5.26 -3.71 -0.02 3.85 16 25 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 26 C 0.06 0.60 6.63 -67.93 -0.45 0.15 16 27 C -0.20 -1.96 9.64 -26.69 -0.26 -2.21 16 28 C -0.18 -1.82 9.90 -26.70 -0.26 -2.08 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.38 5.25 5.68 45.56 0.26 5.51 16 33 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.14 1.54 4.80 -53.56 -0.26 1.28 16 35 H 0.41 5.37 8.08 -40.82 -0.33 5.04 16 36 H 0.09 1.52 7.57 -51.93 -0.39 1.13 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.11 2.73 5.92 -51.92 -0.31 2.42 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.15 1.82 4.96 -53.40 -0.26 1.55 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 1.19 7.83 -51.93 -0.41 0.78 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -28.90 388.69 -9.79 -38.70 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.57 Total: 11.78 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.64 Total: 6.53 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.66 Total: -55.83 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.75 Total: -23.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.90 -9.79 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118340042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.589 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds