Wall clock time and date at job start Tue Mar 31 2020 23:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47548 * 2 1 4 4 O 1.42898 * 109.47327 * 120.00308 * 2 1 3 5 5 C 1.52998 * 109.47217 * 240.00261 * 2 1 3 6 6 N 1.46496 * 109.47415 * 183.41249 * 5 2 1 7 7 C 1.34773 * 120.00038 * 94.67284 * 6 5 2 8 8 O 1.21351 * 120.00231 * 175.24142 * 7 6 5 9 9 C 1.49455 * 120.00096 * 355.23923 * 7 6 5 10 10 O 1.21349 * 119.99905 * 5.07358 * 9 7 6 11 11 N 1.34778 * 119.99994 * 185.07341 * 9 7 6 12 12 C 1.46504 * 119.99485 * 179.97438 * 11 9 7 13 13 C 1.53037 * 109.46093 * 274.74996 * 12 11 9 14 14 C 1.53190 * 109.30971 * 178.60469 * 13 12 11 15 15 N 1.46919 * 108.76617 * 54.65783 * 14 13 12 16 16 C 1.36940 * 120.63003 * 126.36293 * 15 14 13 17 17 H 1.08004 * 119.99874 * 324.61981 * 16 15 14 18 18 C 1.38808 * 120.00089 * 144.62421 * 16 15 14 19 19 N 1.31615 * 120.00464 * 4.09994 * 18 16 15 20 20 Si 1.86805 * 120.00116 * 184.10343 * 18 16 15 21 21 H 1.48507 * 109.47022 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47143 * 119.99520 * 20 18 16 23 23 H 1.48498 * 109.47139 * 239.99755 * 20 18 16 24 24 C 1.46923 * 118.73931 * 306.37901 * 15 14 13 25 25 C 1.53039 * 109.45406 * 154.69815 * 12 11 9 26 26 C 1.46504 * 120.00116 * 274.67275 * 6 5 2 27 27 C 1.53002 * 117.49930 * 197.51415 * 26 6 5 28 28 C 1.52996 * 117.50115 * 128.85278 * 26 6 5 29 29 H 1.09002 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46849 * 299.99868 * 1 2 3 31 31 H 1.08998 * 109.47824 * 59.99437 * 1 2 3 32 32 H 0.96695 * 114.00153 * 63.81897 * 4 2 1 33 33 H 1.09007 * 109.47206 * 63.41412 * 5 2 1 34 34 H 1.08999 * 109.47220 * 303.41821 * 5 2 1 35 35 H 0.96997 * 119.99955 * 359.72552 * 11 9 7 36 36 H 1.08995 * 109.46293 * 34.73037 * 12 11 9 37 37 H 1.08997 * 109.50144 * 298.57302 * 13 12 11 38 38 H 1.09001 * 109.49730 * 58.66808 * 13 12 11 39 39 H 1.09003 * 109.59787 * 294.86760 * 14 13 12 40 40 H 1.09002 * 109.70099 * 174.50863 * 14 13 12 41 41 H 0.96997 * 120.00816 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.59197 * 293.82387 * 24 15 14 43 43 H 1.09007 * 109.70549 * 173.46590 * 24 15 14 44 44 H 1.09007 * 109.50205 * 301.33752 * 25 12 11 45 45 H 1.09004 * 109.49893 * 61.43483 * 25 12 11 46 46 H 1.09001 * 115.54974 * 343.17910 * 26 6 5 47 47 H 1.09001 * 117.49823 * 0.02562 * 27 26 6 48 48 H 1.09005 * 117.49615 * 145.01671 * 27 26 6 49 49 H 1.08998 * 117.50245 * 214.98127 * 28 26 6 50 50 H 1.09003 * 117.49860 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5026 -0.7928 -1.2089 7 6 4.1102 -1.8889 -0.7130 8 8 5.3190 -1.9855 -0.7585 9 6 3.2952 -2.9854 -0.1071 10 8 2.0834 -2.9321 -0.1440 11 7 3.9061 -4.0334 0.4801 12 6 3.1071 -5.1080 1.0745 13 6 2.7221 -4.7254 2.5054 14 6 1.8578 -5.8355 3.1115 15 7 2.5801 -7.1101 3.0016 16 6 2.7884 -7.8915 4.1068 17 1 2.9710 -7.4315 5.0667 18 6 2.7650 -9.2747 3.9932 19 7 2.6232 -9.8357 2.8111 20 14 2.9346 -10.3401 5.5182 21 1 3.0808 -9.4724 6.7145 22 1 1.7248 -11.1885 5.6664 23 1 4.1335 -11.2063 5.3860 24 6 3.0751 -7.5303 1.6837 25 6 3.9256 -6.4010 1.0934 26 6 4.3049 0.3270 -1.7076 27 6 5.7767 0.0554 -2.0251 28 6 5.3987 0.8764 -0.7897 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.7700 -1.6106 1.2040 33 1 1.7274 -0.1732 -2.1382 34 1 1.6275 -1.7296 -1.2805 35 1 4.8747 -4.0780 0.5060 36 1 2.2039 -5.2586 0.4833 37 1 3.6244 -4.5990 3.1036 38 1 2.1593 -3.7919 2.4935 39 1 0.9147 -5.9019 2.5689 40 1 1.6609 -5.6163 4.1609 41 1 2.6065 -10.8023 2.7317 42 1 2.2314 -7.7350 1.0247 43 1 3.6831 -8.4289 1.7888 44 1 4.2196 -6.6605 0.0764 45 1 4.8165 -6.2588 1.7051 46 1 3.7762 1.0383 -2.3421 47 1 6.1480 -0.9566 -1.8633 48 1 6.2164 0.5883 -2.8682 49 1 5.5899 1.9490 -0.8205 50 1 5.5212 0.4049 0.1855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118340042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:29 Heat of formation + Delta-G solvation = -63.002472 kcal Electronic energy + Delta-G solvation = -31433.616552 eV Core-core repulsion = 27269.807869 eV Total energy + Delta-G solvation = -4163.808683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32247 -40.43521 -39.14236 -38.59519 -37.33188 -36.15845 -34.88139 -33.94214 -31.96703 -31.81984 -31.22370 -27.74865 -27.09365 -25.99254 -24.04496 -23.79798 -23.32670 -22.77575 -22.42637 -21.35843 -20.58366 -19.12509 -18.63516 -17.96354 -17.63310 -17.13042 -17.09494 -16.78761 -16.45725 -16.11140 -15.78624 -15.52793 -15.32971 -15.25331 -14.95504 -14.79402 -14.73493 -14.32084 -14.11265 -14.05017 -13.53429 -13.26592 -13.14648 -12.91167 -12.82110 -12.74758 -12.64332 -12.53152 -12.48794 -12.16308 -11.99602 -11.90623 -11.85665 -11.61446 -11.47039 -11.36378 -11.28830 -11.07705 -10.54020 -10.24191 -10.11499 -9.51094 -8.57086 -7.86739 -5.42525 0.25323 1.19691 1.47351 1.49639 1.59263 2.03166 2.29407 2.50389 2.94955 3.16954 3.30573 3.56062 3.70228 3.77304 3.86103 3.92320 4.00368 4.02069 4.13623 4.16259 4.30411 4.30671 4.43969 4.46708 4.60846 4.65472 4.68624 4.82087 4.84579 4.89449 4.91786 4.97931 5.02720 5.04008 5.14286 5.15664 5.25970 5.31736 5.32914 5.41691 5.54589 5.65608 5.66863 5.80413 5.92460 6.19556 6.47125 6.64423 6.72232 6.97136 7.18751 7.84949 8.38732 9.17491 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.002679 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.101369 B =10450.356075 C =11193.276503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.100 0.900 4 O -0.589 6.589 5 C 0.044 3.956 6 N -0.542 5.542 7 C 0.507 3.493 8 O -0.534 6.534 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.679 5.679 12 C 0.161 3.839 13 C -0.126 4.126 14 C 0.147 3.853 15 N -0.612 5.612 16 C -0.265 4.265 17 H 0.064 0.936 18 C -0.042 4.042 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.176 3.824 25 C -0.135 4.135 26 C 0.063 3.937 27 C -0.200 4.200 28 C -0.187 4.187 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.375 0.625 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.057 0.943 41 H 0.251 0.749 42 H -0.001 1.001 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.168 0.832 47 H 0.118 0.882 48 H 0.113 0.887 49 H 0.122 0.878 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 22.941 -12.115 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.032 3.968 3 H 0.118 0.882 4 O -0.401 6.401 5 C -0.077 4.077 6 N -0.271 5.271 7 C 0.290 3.710 8 O -0.413 6.413 9 C 0.295 3.705 10 O -0.413 6.413 11 N -0.328 5.328 12 C 0.058 3.942 13 C -0.166 4.166 14 C 0.021 3.979 15 N -0.336 5.336 16 C -0.395 4.395 17 H 0.082 0.918 18 C -0.238 4.238 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.050 3.950 25 C -0.175 4.175 26 C -0.040 4.040 27 C -0.237 4.237 28 C -0.225 4.225 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.185 0.815 47 H 0.135 0.865 48 H 0.131 0.869 49 H 0.140 0.860 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.406 23.322 -12.054 26.256 hybrid contribution 0.216 -1.531 0.784 1.734 sum 0.622 21.791 -11.270 24.541 Atomic orbital electron populations 1.22346 0.94635 1.02869 1.03498 1.22307 0.94105 0.96255 0.84167 0.88203 1.86502 1.80438 1.28836 1.44275 1.23464 0.77131 1.07011 1.00119 1.47111 1.08074 1.14601 1.57301 1.20177 0.87421 0.83795 0.79570 1.90564 1.14311 1.79589 1.56816 1.20283 0.87994 0.83242 0.78995 1.90415 1.14140 1.77942 1.58790 1.46082 1.11828 1.20353 1.54585 1.20929 0.94319 0.85226 0.93757 1.22212 1.00478 0.98660 0.95219 1.20974 0.92849 0.85345 0.98753 1.44278 1.63332 1.20956 1.05048 1.19483 1.42564 0.88151 0.89286 0.91817 1.26019 1.00025 0.98606 0.99145 1.70047 1.55151 1.09553 1.22986 0.85218 0.76731 0.78643 0.79932 1.19214 1.21799 1.21689 1.20701 0.94631 0.95104 0.84537 1.22355 0.99148 0.94789 1.01166 1.22229 0.88314 0.91178 1.02275 1.24016 0.96072 1.04198 0.99461 1.23238 1.03441 1.00792 0.95017 0.92582 0.92127 0.89279 0.77146 0.86689 0.85704 0.74863 0.90170 0.92338 0.91088 0.96348 0.92425 0.93928 0.98322 0.90837 0.90714 0.91954 0.81496 0.86471 0.86887 0.86012 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.56 71.98 0.69 -1.87 16 2 C 0.09 1.61 3.86 30.59 0.12 1.73 16 3 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 4 O -0.59 -15.06 12.31 -130.07 -1.60 -16.67 16 5 C 0.04 0.72 4.92 86.38 0.42 1.14 16 6 N -0.54 -10.78 2.72 -799.40 -2.18 -12.96 16 7 C 0.51 12.90 7.15 87.27 0.62 13.52 16 8 O -0.53 -15.17 12.38 -3.25 -0.04 -15.21 16 9 C 0.51 13.62 6.87 87.27 0.60 14.22 16 10 O -0.53 -14.40 10.06 15.66 0.16 -14.24 16 11 N -0.68 -18.41 5.07 -443.74 -2.25 -20.66 16 12 C 0.16 5.13 2.42 45.02 0.11 5.24 16 13 C -0.13 -4.21 5.65 30.67 0.17 -4.04 16 14 C 0.15 6.00 6.52 86.36 0.56 6.56 16 15 N -0.61 -30.10 3.00 -699.11 -2.10 -32.20 16 16 C -0.26 -14.31 9.55 84.03 0.80 -13.51 16 17 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 18 C -0.04 -2.32 5.32 84.86 0.45 -1.87 16 19 N -0.93 -53.58 10.62 21.65 0.23 -53.35 16 20 Si 0.97 44.19 29.56 68.60 2.03 46.21 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.18 8.24 5.26 86.36 0.45 8.70 16 25 C -0.13 -4.78 5.55 30.67 0.17 -4.61 16 26 C 0.06 1.00 6.63 44.99 0.30 1.30 16 27 C -0.20 -3.60 9.64 30.62 0.30 -3.31 16 28 C -0.19 -3.31 9.90 30.62 0.30 -3.00 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.38 10.07 5.68 -74.06 -0.42 9.65 16 33 H 0.12 1.09 8.10 -2.38 -0.02 1.08 16 34 H 0.13 2.50 4.80 -28.26 -0.14 2.37 16 35 H 0.41 10.59 8.08 -92.71 -0.75 9.84 16 36 H 0.08 2.73 7.57 -2.39 -0.02 2.71 16 37 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 3.93 5.92 -2.38 -0.01 3.92 16 44 H 0.07 2.36 8.14 -2.38 -0.02 2.35 16 45 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.12 2.87 4.96 -25.62 -0.13 2.75 16 48 H 0.11 1.47 8.14 -2.38 -0.02 1.46 16 49 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.07 1.62 7.83 -2.39 -0.02 1.60 16 Total: -1.00 -64.13 388.69 -0.12 -64.25 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.45 Total: 34.61 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.07 Total: 20.20 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.29 Total: -119.17 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.48 Total: -46.11 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.13 -0.12 -64.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118340042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.251 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds