Wall clock time and date at job start Tue Mar 31 2020 23:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47127 * 2 1 4 4 N 1.46501 * 109.47258 * 120.00241 * 2 1 3 5 5 C 1.34775 * 119.99574 * 274.99966 * 4 2 1 6 6 O 1.21348 * 120.00464 * 359.97438 * 5 4 2 7 7 C 1.49456 * 119.99669 * 179.97438 * 5 4 2 8 8 O 1.21340 * 120.00134 * 353.34971 * 7 5 4 9 9 N 1.34777 * 119.99831 * 173.35069 * 7 5 4 10 10 C 1.47078 * 120.88300 * 171.97800 * 9 7 5 11 11 C 1.53692 * 108.27868 * 128.75329 * 10 9 7 12 12 N 1.46899 * 109.25559 * 54.08596 * 11 10 9 13 13 C 1.46904 * 110.99910 * 172.60837 * 12 11 10 14 14 C 1.50696 * 109.47179 * 294.29776 * 13 12 11 15 15 H 1.08005 * 119.99883 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00473 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00527 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 119.99697 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47325 * 89.99972 * 18 16 14 20 20 H 1.48499 * 109.46950 * 210.00301 * 18 16 14 21 21 H 1.48500 * 109.46692 * 329.99694 * 18 16 14 22 22 C 1.46900 * 111.26733 * 296.75490 * 12 11 10 23 23 C 1.47087 * 120.87920 * 352.25448 * 9 7 5 24 24 C 1.53001 * 109.47152 * 239.99809 * 2 1 3 25 25 H 1.09000 * 110.80819 * 298.14806 * 24 2 1 26 26 C 1.54811 * 110.90813 * 174.51649 * 24 2 1 27 27 C 1.54103 * 104.18711 * 220.92352 * 26 24 2 28 28 O 1.43735 * 107.29371 * 357.96918 * 27 26 24 29 29 C 1.44382 * 106.98019 * 26.51279 * 28 27 26 30 30 H 1.09002 * 109.46877 * 54.80609 * 1 2 3 31 31 H 1.09002 * 109.47214 * 174.80098 * 1 2 3 32 32 H 1.08996 * 109.46983 * 294.80245 * 1 2 3 33 33 H 0.97004 * 120.00301 * 94.99569 * 4 2 1 34 34 H 1.09007 * 109.62709 * 248.52667 * 10 9 7 35 35 H 1.09000 * 109.62558 * 9.09720 * 10 9 7 36 36 H 1.08993 * 109.64731 * 294.08126 * 11 10 9 37 37 H 1.09004 * 109.44279 * 173.96046 * 11 10 9 38 38 H 1.08998 * 109.46985 * 54.30278 * 13 12 11 39 39 H 1.09003 * 109.46698 * 174.29750 * 13 12 11 40 40 H 0.96999 * 119.99990 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.49350 * 303.14483 * 22 12 11 42 42 H 1.08998 * 109.49246 * 183.06725 * 22 12 11 43 43 H 1.08992 * 109.62938 * 350.89665 * 23 9 7 44 44 H 1.09004 * 109.62831 * 111.47738 * 23 9 7 45 45 H 1.08997 * 110.48817 * 339.59772 * 26 24 2 46 46 H 1.09002 * 110.48684 * 102.11231 * 26 24 2 47 47 H 1.08996 * 109.87700 * 117.39771 * 27 26 24 48 48 H 1.09001 * 109.87482 * 238.54827 * 27 26 24 49 49 H 1.08996 * 110.62115 * 201.43594 * 29 28 27 50 50 H 1.09000 * 110.61205 * 78.43486 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8589 1.1592 2.4115 7 6 2.6447 -0.7230 3.5775 8 8 2.8180 -1.9238 3.5565 9 7 2.9011 -0.0247 4.7014 10 6 3.2219 -0.7128 5.9610 11 6 4.5162 -0.1059 6.5257 12 7 4.3601 1.3505 6.6366 13 6 5.5054 1.9511 7.3336 14 6 5.5287 1.4758 8.7635 15 1 4.7690 0.7952 9.1188 16 6 6.5198 1.9096 9.6181 17 7 6.5404 1.4944 10.8659 18 14 7.8333 3.0873 9.0038 19 1 7.3824 4.4862 9.2159 20 1 9.0951 2.8551 9.7516 21 1 8.0667 2.8565 7.5555 22 6 4.1640 1.9674 5.3179 23 6 2.8614 1.4456 4.7022 24 6 2.0400 -0.7213 -1.2492 25 1 1.7159 -1.7620 -1.2549 26 6 3.5814 -0.6221 -1.3538 27 6 3.8427 -0.3672 -2.8510 28 8 2.5680 -0.3777 -3.5151 29 6 1.5795 0.0091 -2.5364 30 1 -0.3633 0.5923 -0.8398 31 1 -0.3634 -1.0234 -0.0931 32 1 -0.3633 0.4311 0.9328 33 1 2.2490 -1.6319 1.1526 34 1 2.4077 -0.5733 6.6722 35 1 3.3672 -1.7762 5.7706 36 1 5.3484 -0.3329 5.8595 37 1 4.7142 -0.5266 7.5116 38 1 6.4292 1.6546 6.8370 39 1 5.4143 3.0371 7.3132 40 1 7.2375 1.8000 11.4672 41 1 5.0013 1.7115 4.6685 42 1 4.1062 3.0502 5.4278 43 1 2.7682 1.8099 3.6792 44 1 2.0132 1.7887 5.2947 45 1 3.9517 0.2098 -0.7549 46 1 4.0461 -1.5558 -1.0369 47 1 4.3218 0.6028 -2.9837 48 1 4.4780 -1.1551 -3.2557 49 1 0.5884 -0.3306 -2.8369 50 1 1.5878 1.0890 -2.3887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119139655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:26 Heat of formation + Delta-G solvation = -113.378008 kcal Electronic energy + Delta-G solvation = -30271.056732 eV Core-core repulsion = 26105.063601 eV Total energy + Delta-G solvation = -4165.993130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13275 -40.75980 -39.85617 -39.03121 -37.19132 -35.96062 -34.43027 -33.27463 -32.21301 -31.55998 -30.67406 -29.11955 -27.81008 -26.20737 -24.93544 -24.05904 -23.26699 -22.91213 -21.86645 -21.66047 -20.57185 -19.10924 -18.60700 -18.30830 -17.70216 -17.22378 -16.97597 -16.79049 -16.47204 -16.15208 -16.01717 -15.84296 -15.72344 -15.45469 -15.31820 -14.98656 -14.52532 -14.46350 -14.42543 -14.28596 -13.87958 -13.69737 -13.33682 -13.30325 -12.89630 -12.83384 -12.66611 -12.46307 -12.37254 -12.28704 -12.21705 -12.09722 -12.00189 -11.93234 -11.84999 -11.59234 -11.46881 -10.78777 -10.68212 -10.49282 -10.21415 -9.94556 -9.10282 -8.28424 -6.31967 0.25916 1.18255 1.35123 1.36120 1.46277 2.02881 2.32572 2.34164 2.92191 3.03744 3.14857 3.19206 3.50505 3.60107 3.88783 3.90662 3.98697 4.12633 4.16421 4.19276 4.21420 4.25976 4.36103 4.40048 4.42247 4.49816 4.63448 4.77508 4.78677 4.80224 4.81866 4.83178 4.85593 4.92380 4.93681 4.95414 5.01419 5.07868 5.14069 5.20279 5.29835 5.37894 5.50958 5.84541 5.88709 5.97807 6.17904 6.26406 6.58779 6.60105 6.74171 6.85458 7.31612 8.87704 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002210 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.487839 B =12664.808057 C =13237.088895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.089 0.911 4 N -0.681 5.681 5 C 0.518 3.482 6 O -0.522 6.522 7 C 0.502 3.498 8 O -0.548 6.548 9 N -0.580 5.580 10 C 0.122 3.878 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.172 3.828 14 C -0.516 4.516 15 H 0.042 0.958 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.254 1.254 22 C 0.037 3.963 23 C 0.091 3.909 24 C -0.122 4.122 25 H 0.105 0.895 26 C -0.153 4.153 27 C 0.043 3.957 28 O -0.400 6.400 29 C 0.055 3.945 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.418 0.582 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.023 0.977 37 H 0.077 0.923 38 H -0.015 1.015 39 H 0.034 0.966 40 H 0.267 0.733 41 H 0.027 0.973 42 H 0.096 0.904 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 -3.253 -29.701 31.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.107 0.893 4 N -0.333 5.333 5 C 0.299 3.701 6 O -0.400 6.400 7 C 0.285 3.715 8 O -0.426 6.426 9 N -0.312 5.312 10 C 0.000 4.000 11 C -0.072 4.072 12 N -0.265 5.265 13 C 0.045 3.955 14 C -0.554 4.554 15 H 0.061 0.939 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.770 3.230 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.178 1.178 22 C -0.092 4.092 23 C -0.030 4.030 24 C -0.141 4.141 25 H 0.123 0.877 26 C -0.191 4.191 27 C -0.033 4.033 28 O -0.319 6.319 29 C -0.022 4.022 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.255 0.745 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.003 0.997 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.114 0.886 43 H 0.163 0.837 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.131 0.869 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.207 -2.992 -29.477 31.677 hybrid contribution 1.755 -0.139 0.598 1.860 sum -9.451 -3.131 -28.879 30.547 Atomic orbital electron populations 1.22221 0.93418 1.03536 1.03066 1.21152 0.95234 0.96878 0.81808 0.89289 1.45852 1.64138 1.15180 1.08156 1.19855 0.79045 0.86596 0.84624 1.90528 1.49742 1.15694 1.84066 1.20364 0.79265 0.87068 0.84797 1.90726 1.52941 1.14972 1.83981 1.48197 1.65287 1.08846 1.08870 1.21927 0.97033 0.97338 0.83711 1.22333 0.95525 0.88883 1.00492 1.61845 1.42786 1.03750 1.18167 1.19946 0.87529 0.95168 0.92868 1.21233 1.11388 1.28062 0.94725 0.93939 1.25822 1.00143 0.98147 0.94781 1.70041 1.35604 1.46700 1.06313 0.85734 0.78369 0.79621 0.79307 1.18855 1.20927 1.17754 1.22621 0.96928 1.00546 0.89074 1.22911 0.97198 0.76930 1.05980 1.23000 0.95423 1.01789 0.93911 0.87688 1.23029 0.95695 1.03704 0.96675 1.23254 0.86278 1.02141 0.91668 1.88873 1.17387 1.90040 1.35647 1.23688 0.93478 0.99156 0.85860 0.89229 0.91015 0.93353 0.74455 0.89813 0.88310 0.95907 0.90494 0.99715 0.94816 0.92437 0.95496 0.88611 0.83727 0.90347 0.90810 0.89586 0.91973 0.89112 0.86933 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.19 71.98 0.66 -0.90 16 2 C 0.15 1.67 1.99 44.99 0.09 1.76 16 3 H 0.09 1.17 7.55 -2.39 -0.02 1.15 16 4 N -0.68 -10.13 4.86 -443.87 -2.16 -12.29 16 5 C 0.52 11.18 7.71 87.27 0.67 11.85 16 6 O -0.52 -12.55 12.86 -3.24 -0.04 -12.59 16 7 C 0.50 13.41 7.75 87.27 0.68 14.08 16 8 O -0.55 -16.28 15.96 -3.22 -0.05 -16.34 16 9 N -0.58 -16.69 3.00 -818.62 -2.46 -19.15 16 10 C 0.12 3.82 6.65 86.50 0.57 4.40 16 11 C 0.06 2.15 5.47 86.54 0.47 2.62 16 12 N -0.54 -21.76 4.62 -898.89 -4.15 -25.91 16 13 C 0.17 8.07 3.79 85.55 0.32 8.39 16 14 C -0.52 -29.24 8.96 25.60 0.23 -29.01 16 15 H 0.04 2.67 7.37 -2.91 -0.02 2.65 16 16 C 0.01 0.49 5.47 84.65 0.46 0.96 16 17 N -0.95 -58.51 13.96 21.44 0.30 -58.21 16 18 Si 0.95 43.50 27.47 68.60 1.88 45.38 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 22 C 0.04 1.17 5.62 86.38 0.49 1.66 16 23 C 0.09 2.50 6.11 86.35 0.53 3.03 16 24 C -0.12 -1.02 2.73 -9.49 -0.03 -1.04 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 C -0.15 -1.50 6.40 31.59 0.20 -1.30 16 27 C 0.04 0.48 7.70 72.36 0.56 1.04 16 28 O -0.40 -5.82 11.52 -148.98 -1.72 -7.54 16 29 C 0.05 0.49 6.21 72.67 0.45 0.94 16 30 H 0.09 0.53 7.53 -2.39 -0.02 0.51 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 5.50 8.09 -92.71 -0.75 4.75 16 34 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.10 2.96 7.05 -2.39 -0.02 2.95 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 3.32 6.67 -2.38 -0.02 3.30 16 38 H -0.01 -0.70 7.18 -2.39 -0.02 -0.72 16 39 H 0.03 1.54 7.40 -2.39 -0.02 1.52 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.84 16 42 H 0.10 2.80 7.99 -2.39 -0.02 2.78 16 43 H 0.15 3.67 4.43 -39.62 -0.18 3.50 16 44 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.07 0.83 7.84 -2.39 -0.02 0.81 16 46 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.56 8.05 -2.39 -0.02 0.54 16 Total: -1.00 -69.92 391.76 -2.06 -71.98 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -0.03 Total: 16.19 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.36 Total: 18.46 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -8.47 Total: -115.56 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.81 Total: -36.46 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Total: -69.92 -2.06 -71.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119139655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.395 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds