Wall clock time and date at job start Tue Mar 31 2020 23:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47060 * 2 1 4 4 N 1.46493 * 109.47231 * 120.00095 * 2 1 3 5 5 C 1.34774 * 120.00245 * 274.99716 * 4 2 1 6 6 O 1.21343 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.49450 * 119.99905 * 179.97438 * 5 4 2 8 8 O 1.21347 * 120.00617 * 6.38429 * 7 5 4 9 9 N 1.34777 * 119.99777 * 186.38239 * 7 5 4 10 10 C 1.47082 * 120.88068 * 7.93902 * 9 7 5 11 11 C 1.53699 * 108.27702 * 128.75335 * 10 9 7 12 12 N 1.46900 * 109.25578 * 54.08217 * 11 10 9 13 13 C 1.46908 * 110.99891 * 172.60739 * 12 11 10 14 14 C 1.50698 * 109.46724 * 59.48125 * 13 12 11 15 15 H 1.07996 * 120.00780 * 355.67265 * 14 13 12 16 16 C 1.37887 * 119.99586 * 175.66503 * 14 13 12 17 17 N 1.31512 * 120.00094 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99949 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46824 * 89.99684 * 18 16 14 20 20 H 1.48490 * 109.46819 * 209.99448 * 18 16 14 21 21 H 1.48495 * 109.47231 * 329.99800 * 18 16 14 22 22 C 1.46901 * 111.27204 * 296.75384 * 12 11 10 23 23 C 1.47081 * 120.88132 * 188.21213 * 9 7 5 24 24 C 1.53003 * 109.46913 * 240.00180 * 2 1 3 25 25 H 1.08989 * 110.91046 * 302.12959 * 24 2 1 26 26 C 1.55455 * 110.92332 * 65.75332 * 24 2 1 27 27 C 1.54952 * 100.98847 * 152.22669 * 26 24 2 28 28 O 1.43645 * 105.13406 * 323.60395 * 27 26 24 29 29 C 1.43237 * 109.97357 * 24.42965 * 28 27 26 30 30 H 1.08997 * 109.47036 * 59.99544 * 1 2 3 31 31 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46967 * 300.00142 * 1 2 3 33 33 H 0.97000 * 120.00185 * 94.99701 * 4 2 1 34 34 H 1.09003 * 109.63013 * 248.51682 * 10 9 7 35 35 H 1.08996 * 109.62802 * 9.10534 * 10 9 7 36 36 H 1.08995 * 109.64875 * 294.08231 * 11 10 9 37 37 H 1.09003 * 109.42103 * 173.94364 * 11 10 9 38 38 H 1.09001 * 109.46898 * 179.47622 * 13 12 11 39 39 H 1.08990 * 109.46985 * 299.48132 * 13 12 11 40 40 H 0.96993 * 119.99989 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49370 * 303.14769 * 22 12 11 42 42 H 1.08992 * 109.49598 * 183.06638 * 22 12 11 43 43 H 1.08996 * 109.63230 * 350.90358 * 23 9 7 44 44 H 1.09003 * 109.62172 * 111.28594 * 23 9 7 45 45 H 1.08996 * 111.06160 * 34.31110 * 26 24 2 46 46 H 1.08999 * 111.18554 * 270.19286 * 26 24 2 47 47 H 1.09001 * 110.30957 * 204.69172 * 27 26 24 48 48 H 1.09001 * 110.39149 * 82.56323 * 27 26 24 49 49 H 1.09004 * 109.83200 * 117.80345 * 29 28 27 50 50 H 1.09004 * 109.82918 * 238.68224 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1589 2.4117 7 6 2.6448 -0.7230 3.5774 8 8 3.0422 -1.8669 3.4980 9 7 2.6523 -0.0881 4.7662 10 6 2.0186 1.2300 4.9221 11 6 1.0701 1.1691 6.1300 12 7 1.8125 0.6945 7.3054 13 6 0.9909 0.7873 8.5197 14 6 -0.2518 -0.0481 8.3503 15 1 -0.4497 -0.5370 7.4079 16 6 -1.1364 -0.1884 9.3988 17 7 -2.2212 -0.9170 9.2509 18 14 -0.7945 0.6577 11.0287 19 1 -1.4042 2.0118 11.0209 20 1 -1.3801 -0.1424 12.1341 21 1 0.6723 0.7765 11.2268 22 6 2.3058 -0.6749 7.1070 23 6 3.2995 -0.6923 5.9407 24 6 2.0400 -0.7212 -1.2493 25 1 1.6591 -1.7415 -1.2921 26 6 1.6628 0.0643 -2.5367 27 6 2.8055 -0.3659 -3.4906 28 8 3.9713 -0.4677 -2.6575 29 6 3.5829 -0.7081 -1.2999 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 2.7846 1.9867 5.0920 35 1 1.4530 1.4730 4.0226 36 1 0.2494 0.4841 5.9173 37 1 0.6719 2.1641 6.3287 38 1 1.5614 0.4211 9.3732 39 1 0.7097 1.8266 8.6895 40 1 -2.8432 -1.0160 9.9885 41 1 1.4678 -1.3342 6.8807 42 1 2.8036 -1.0172 8.0142 43 1 3.5812 -1.7208 5.7149 44 1 4.1882 -0.1188 6.2044 45 1 1.6829 1.1396 -2.3594 46 1 0.6920 -0.2501 -2.9198 47 1 2.9573 0.3879 -4.2632 48 1 2.5789 -1.3310 -3.9438 49 1 3.9719 -1.6711 -0.9690 50 1 3.9672 0.0856 -0.6592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119139656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:29 Heat of formation + Delta-G solvation = -90.223969 kcal Electronic energy + Delta-G solvation = -30495.350655 eV Core-core repulsion = 26330.361559 eV Total energy + Delta-G solvation = -4164.989096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04476 -40.01023 -38.76676 -37.62739 -36.32402 -34.51564 -32.75267 -32.29400 -30.75121 -30.25802 -29.33572 -28.77911 -26.18326 -24.75675 -23.47392 -23.02027 -22.68333 -21.70709 -21.01056 -20.49498 -19.27223 -17.69584 -17.38709 -16.88096 -16.77371 -16.36313 -15.96312 -15.90921 -15.26613 -14.98458 -14.61544 -14.53039 -14.34838 -14.29150 -13.84173 -13.75906 -13.61316 -13.43358 -13.30733 -12.81579 -12.51705 -12.45268 -12.35093 -12.11682 -11.95352 -11.59829 -11.54571 -11.45998 -11.33620 -11.18397 -11.15131 -10.89147 -10.64239 -10.47901 -10.34872 -10.00947 -9.93675 -9.58663 -9.53195 -9.11346 -8.65008 -8.57210 -7.31378 -6.15356 -4.16161 1.39936 2.25416 3.18555 3.24316 3.32141 3.34946 3.40184 3.44597 3.87783 4.12418 4.29916 4.34890 4.37421 4.69141 4.71342 4.75332 4.84598 4.95868 4.97643 5.17245 5.24354 5.27380 5.30965 5.35322 5.39414 5.41597 5.47647 5.55106 5.60031 5.66401 5.75665 5.84198 5.89550 5.93110 5.98999 6.25356 6.40119 6.52597 6.55734 6.60771 6.70182 6.86567 6.92658 7.00152 7.34844 7.49082 7.67315 7.92750 7.97423 7.99412 8.38391 8.86220 9.46791 10.97492 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.002274 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.951271 B =12307.487369 C =12797.034244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 H 0.097 0.903 4 N -0.701 5.701 5 C 0.514 3.486 6 O -0.507 6.507 7 C 0.503 3.497 8 O -0.533 6.533 9 N -0.570 5.570 10 C 0.078 3.922 11 C 0.047 3.953 12 N -0.535 5.535 13 C 0.153 3.847 14 C -0.553 4.553 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.049 3.951 23 C 0.112 3.888 24 C -0.132 4.132 25 H 0.095 0.905 26 C -0.146 4.146 27 C 0.050 3.950 28 O -0.384 6.384 29 C 0.055 3.945 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 1.675 -22.868 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 H 0.115 0.885 4 N -0.354 5.354 5 C 0.296 3.704 6 O -0.383 6.383 7 C 0.285 3.715 8 O -0.411 6.411 9 N -0.303 5.303 10 C -0.044 4.044 11 C -0.082 4.082 12 N -0.259 5.259 13 C 0.026 3.974 14 C -0.592 4.592 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.080 4.080 23 C -0.010 4.010 24 C -0.152 4.152 25 H 0.113 0.887 26 C -0.184 4.184 27 C -0.026 4.026 28 O -0.303 6.303 29 C -0.022 4.022 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.449 2.190 -22.758 24.739 hybrid contribution -0.986 -0.668 1.076 1.605 sum 8.464 1.522 -21.683 23.326 Atomic orbital electron populations 1.22215 0.94126 1.02820 1.03267 1.21034 0.94847 0.97281 0.82039 0.88519 1.45872 1.65752 1.14956 1.08830 1.20308 0.78343 0.87007 0.84763 1.90546 1.48742 1.15689 1.83369 1.19912 0.80668 0.86319 0.84561 1.90729 1.48360 1.16547 1.85514 1.48088 1.53103 1.20770 1.08297 1.23109 0.97321 0.82230 1.01714 1.22416 0.94790 1.01286 0.89712 1.62446 1.38800 1.20702 1.03923 1.20225 0.91965 0.96916 0.88290 1.21676 1.05458 1.31380 1.00662 0.90860 1.24989 0.94688 0.94587 0.98821 1.69925 1.11691 1.39449 1.32533 0.86781 0.79219 0.79749 0.83556 1.20154 1.21306 1.18765 1.22252 0.97378 0.91732 0.96659 1.22005 0.95772 0.99297 0.83922 1.23088 0.96187 1.01074 0.94807 0.88700 1.23319 0.99842 1.01334 0.93926 1.23391 0.84523 1.00925 0.93777 1.88426 1.30234 1.93611 1.18076 1.23204 0.93186 1.01734 0.84042 0.91130 0.92004 0.91305 0.75169 0.91017 0.85227 0.93394 0.90178 0.95026 0.95516 0.92630 0.93230 0.90148 0.89114 0.90682 0.89716 0.89290 0.89553 0.92028 0.91048 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.33 37.16 0.35 -0.92 16 2 C 0.15 1.19 1.95 -67.93 -0.13 1.06 16 3 H 0.10 0.86 7.56 -51.93 -0.39 0.47 16 4 N -0.70 -6.89 4.76 -54.24 -0.26 -7.15 16 5 C 0.51 6.76 7.71 -11.59 -0.09 6.67 16 6 O -0.51 -7.32 12.85 5.50 0.07 -7.25 16 7 C 0.50 7.75 7.75 -11.58 -0.09 7.66 16 8 O -0.53 -8.91 15.96 5.50 0.09 -8.82 16 9 N -0.57 -9.12 3.00 -172.68 -0.52 -9.64 16 10 C 0.08 1.23 6.14 -3.36 -0.02 1.21 16 11 C 0.05 0.89 5.17 -3.46 -0.02 0.87 16 12 N -0.53 -10.76 4.83 -235.46 -1.14 -11.89 16 13 C 0.15 3.56 4.20 -4.97 -0.02 3.54 16 14 C -0.55 -15.10 8.32 -34.44 -0.29 -15.39 16 15 H 0.07 2.20 6.12 -52.49 -0.32 1.88 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.88 21.06 27.56 -169.99 -4.68 16.38 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.26 -6.03 6.42 56.52 0.36 -5.67 16 22 C 0.05 0.92 5.25 -3.70 -0.02 0.90 16 23 C 0.11 1.76 6.61 -3.60 -0.02 1.74 16 24 C -0.13 -0.81 2.60 -88.59 -0.23 -1.04 16 25 H 0.09 0.50 8.14 -51.94 -0.42 0.08 16 26 C -0.15 -0.73 5.76 -24.40 -0.14 -0.87 16 27 C 0.05 0.30 7.78 38.19 0.30 0.60 16 28 O -0.38 -3.58 11.36 -35.23 -0.40 -3.99 16 29 C 0.05 0.43 7.10 37.88 0.27 0.70 16 30 H 0.07 0.41 7.48 -51.93 -0.39 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.41 3.68 8.09 -40.82 -0.33 3.35 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.13 2.03 4.43 -54.28 -0.24 1.79 16 36 H 0.05 1.04 6.63 -51.93 -0.34 0.70 16 37 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 38 H 0.03 0.75 6.82 -51.93 -0.35 0.39 16 39 H 0.03 0.62 7.79 -51.93 -0.40 0.22 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.05 1.08 7.10 -51.93 -0.37 0.71 16 42 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 43 H 0.09 1.39 7.05 -51.93 -0.37 1.03 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 0.43 8.03 -51.93 -0.42 0.01 16 46 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.63 7.81 -51.93 -0.41 0.23 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -32.26 388.68 -8.62 -40.87 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.15 Total: 3.30 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.26 Total: 8.67 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -1.14 Total: -55.01 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.24 Total: -20.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.68 Total: 16.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.26 -8.62 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119139656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.352 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds