Wall clock time and date at job start Tue Mar 31 2020 23:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47060 * 2 1 4 4 N 1.46493 * 109.47231 * 120.00095 * 2 1 3 5 5 C 1.34774 * 120.00245 * 274.99716 * 4 2 1 6 6 O 1.21343 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.49450 * 119.99905 * 179.97438 * 5 4 2 8 8 O 1.21347 * 120.00617 * 6.38429 * 7 5 4 9 9 N 1.34777 * 119.99777 * 186.38239 * 7 5 4 10 10 C 1.47082 * 120.88068 * 7.93902 * 9 7 5 11 11 C 1.53699 * 108.27702 * 128.75335 * 10 9 7 12 12 N 1.46900 * 109.25578 * 54.08217 * 11 10 9 13 13 C 1.46908 * 110.99891 * 172.60739 * 12 11 10 14 14 C 1.50698 * 109.46724 * 59.48125 * 13 12 11 15 15 H 1.07996 * 120.00780 * 355.67265 * 14 13 12 16 16 C 1.37887 * 119.99586 * 175.66503 * 14 13 12 17 17 N 1.31512 * 120.00094 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99949 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46824 * 89.99684 * 18 16 14 20 20 H 1.48490 * 109.46819 * 209.99448 * 18 16 14 21 21 H 1.48495 * 109.47231 * 329.99800 * 18 16 14 22 22 C 1.46901 * 111.27204 * 296.75384 * 12 11 10 23 23 C 1.47081 * 120.88132 * 188.21213 * 9 7 5 24 24 C 1.53003 * 109.46913 * 240.00180 * 2 1 3 25 25 H 1.08989 * 110.91046 * 302.12959 * 24 2 1 26 26 C 1.55455 * 110.92332 * 65.75332 * 24 2 1 27 27 C 1.54952 * 100.98847 * 152.22669 * 26 24 2 28 28 O 1.43645 * 105.13406 * 323.60395 * 27 26 24 29 29 C 1.43237 * 109.97357 * 24.42965 * 28 27 26 30 30 H 1.08997 * 109.47036 * 59.99544 * 1 2 3 31 31 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46967 * 300.00142 * 1 2 3 33 33 H 0.97000 * 120.00185 * 94.99701 * 4 2 1 34 34 H 1.09003 * 109.63013 * 248.51682 * 10 9 7 35 35 H 1.08996 * 109.62802 * 9.10534 * 10 9 7 36 36 H 1.08995 * 109.64875 * 294.08231 * 11 10 9 37 37 H 1.09003 * 109.42103 * 173.94364 * 11 10 9 38 38 H 1.09001 * 109.46898 * 179.47622 * 13 12 11 39 39 H 1.08990 * 109.46985 * 299.48132 * 13 12 11 40 40 H 0.96993 * 119.99989 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49370 * 303.14769 * 22 12 11 42 42 H 1.08992 * 109.49598 * 183.06638 * 22 12 11 43 43 H 1.08996 * 109.63230 * 350.90358 * 23 9 7 44 44 H 1.09003 * 109.62172 * 111.28594 * 23 9 7 45 45 H 1.08996 * 111.06160 * 34.31110 * 26 24 2 46 46 H 1.08999 * 111.18554 * 270.19286 * 26 24 2 47 47 H 1.09001 * 110.30957 * 204.69172 * 27 26 24 48 48 H 1.09001 * 110.39149 * 82.56323 * 27 26 24 49 49 H 1.09004 * 109.83200 * 117.80345 * 29 28 27 50 50 H 1.09004 * 109.82918 * 238.68224 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1589 2.4117 7 6 2.6448 -0.7230 3.5774 8 8 3.0422 -1.8669 3.4980 9 7 2.6523 -0.0881 4.7662 10 6 2.0186 1.2300 4.9221 11 6 1.0701 1.1691 6.1300 12 7 1.8125 0.6945 7.3054 13 6 0.9909 0.7873 8.5197 14 6 -0.2518 -0.0481 8.3503 15 1 -0.4497 -0.5370 7.4079 16 6 -1.1364 -0.1884 9.3988 17 7 -2.2212 -0.9170 9.2509 18 14 -0.7945 0.6577 11.0287 19 1 -1.4042 2.0118 11.0209 20 1 -1.3801 -0.1424 12.1341 21 1 0.6723 0.7765 11.2268 22 6 2.3058 -0.6749 7.1070 23 6 3.2995 -0.6923 5.9407 24 6 2.0400 -0.7212 -1.2493 25 1 1.6591 -1.7415 -1.2921 26 6 1.6628 0.0643 -2.5367 27 6 2.8055 -0.3659 -3.4906 28 8 3.9713 -0.4677 -2.6575 29 6 3.5829 -0.7081 -1.2999 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 2.7846 1.9867 5.0920 35 1 1.4530 1.4730 4.0226 36 1 0.2494 0.4841 5.9173 37 1 0.6719 2.1641 6.3287 38 1 1.5614 0.4211 9.3732 39 1 0.7097 1.8266 8.6895 40 1 -2.8432 -1.0160 9.9885 41 1 1.4678 -1.3342 6.8807 42 1 2.8036 -1.0172 8.0142 43 1 3.5812 -1.7208 5.7149 44 1 4.1882 -0.1188 6.2044 45 1 1.6829 1.1396 -2.3594 46 1 0.6920 -0.2501 -2.9198 47 1 2.9573 0.3879 -4.2632 48 1 2.5789 -1.3310 -3.9438 49 1 3.9719 -1.6711 -0.9690 50 1 3.9672 0.0856 -0.6592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119139656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:29 Heat of formation + Delta-G solvation = -115.499576 kcal Electronic energy + Delta-G solvation = -30496.446688 eV Core-core repulsion = 26330.361559 eV Total energy + Delta-G solvation = -4166.085129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13414 -40.77239 -39.86446 -39.05185 -37.21452 -36.00010 -34.36485 -33.47781 -32.17229 -30.89096 -30.49668 -29.90571 -27.74962 -26.02056 -24.71222 -24.11876 -23.46893 -23.03524 -21.80439 -21.69592 -20.58708 -19.17161 -18.54722 -18.30749 -17.70987 -17.20350 -17.01501 -16.85272 -16.48235 -16.16348 -16.00783 -15.88666 -15.81272 -15.47728 -15.20176 -14.80711 -14.47780 -14.40582 -14.22160 -14.05460 -13.97673 -13.83186 -13.38445 -13.17200 -13.05662 -12.78303 -12.67808 -12.47245 -12.39727 -12.25042 -12.16736 -12.07773 -12.02267 -11.97593 -11.76068 -11.68410 -11.66777 -10.81305 -10.51744 -10.43184 -10.29504 -9.92046 -9.07536 -8.33313 -6.39532 0.25377 1.19574 1.36419 1.37701 1.49326 2.03077 2.32861 2.33841 2.90889 3.01831 3.14914 3.23696 3.37920 3.60622 3.82605 3.94557 4.03915 4.17132 4.21549 4.25135 4.30271 4.31791 4.32591 4.41077 4.49319 4.53754 4.64694 4.76120 4.77672 4.83725 4.85597 4.88506 4.94294 4.95874 4.97994 5.03709 5.04978 5.14080 5.18142 5.21054 5.29233 5.36996 5.46248 5.87368 6.01279 6.03600 6.17318 6.28401 6.29920 6.59650 6.66936 6.84663 7.27593 8.83124 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.002274 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.951271 B =12307.487369 C =12797.034244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.088 0.912 4 N -0.685 5.685 5 C 0.515 3.485 6 O -0.522 6.522 7 C 0.500 3.500 8 O -0.549 6.549 9 N -0.580 5.580 10 C 0.093 3.907 11 C 0.050 3.950 12 N -0.525 5.525 13 C 0.158 3.842 14 C -0.551 4.551 15 H 0.028 0.972 16 C 0.008 3.992 17 N -0.949 5.949 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.241 1.241 22 C 0.052 3.948 23 C 0.121 3.879 24 C -0.123 4.123 25 H 0.110 0.890 26 C -0.140 4.140 27 C 0.043 3.957 28 O -0.411 6.411 29 C 0.052 3.948 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.418 0.582 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.008 0.992 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.008 0.992 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 2.757 -23.579 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.106 0.894 4 N -0.338 5.338 5 C 0.296 3.704 6 O -0.400 6.400 7 C 0.283 3.717 8 O -0.427 6.427 9 N -0.312 5.312 10 C -0.028 4.028 11 C -0.080 4.080 12 N -0.248 5.248 13 C 0.031 3.969 14 C -0.589 4.589 15 H 0.046 0.954 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.164 1.164 22 C -0.078 4.078 23 C -0.001 4.001 24 C -0.142 4.142 25 H 0.128 0.872 26 C -0.177 4.177 27 C -0.033 4.033 28 O -0.331 6.331 29 C -0.024 4.024 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.026 0.974 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.103 0.897 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.703 3.263 -23.519 26.045 hybrid contribution -1.388 -1.086 1.149 2.104 sum 9.314 2.177 -22.370 24.329 Atomic orbital electron populations 1.22194 0.93525 1.03206 1.03159 1.21169 0.95162 0.96917 0.81729 0.89373 1.45896 1.64282 1.15170 1.08439 1.19937 0.78738 0.86789 0.84903 1.90527 1.49871 1.16106 1.83506 1.20340 0.80106 0.86154 0.85118 1.90713 1.48952 1.17189 1.85893 1.48192 1.53348 1.20912 1.08757 1.22997 0.97132 0.82626 1.00091 1.22427 0.94525 1.00359 0.90641 1.62491 1.37645 1.21308 1.03375 1.20124 0.90490 0.96302 0.90021 1.21888 1.07106 1.31095 0.98854 0.95356 1.25989 0.94297 0.95407 1.03268 1.70089 1.13195 1.41673 1.34005 0.85624 0.80293 0.78556 0.77922 1.19113 1.21294 1.16414 1.22267 0.96735 0.90123 0.98635 1.21936 0.95374 1.00189 0.82638 1.23028 0.94935 1.01877 0.94314 0.87220 1.23334 1.00509 1.01177 0.92730 1.23603 0.83917 1.01947 0.93834 1.88398 1.32178 1.93752 1.18787 1.23209 0.94364 1.01273 0.83580 0.88815 0.91362 0.93832 0.74483 0.89131 0.84799 0.97355 0.89596 0.94374 0.94684 0.92531 0.97386 0.89123 0.88737 0.88123 0.89725 0.87079 0.88636 0.90976 0.90935 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.33 71.98 0.67 -1.56 16 2 C 0.15 2.21 1.95 44.99 0.09 2.30 16 3 H 0.09 1.49 7.56 -2.38 -0.02 1.47 16 4 N -0.69 -12.94 4.76 -443.88 -2.11 -15.05 16 5 C 0.52 13.34 7.71 87.27 0.67 14.01 16 6 O -0.52 -14.82 12.85 -3.22 -0.04 -14.86 16 7 C 0.50 15.24 7.75 87.27 0.68 15.91 16 8 O -0.55 -18.15 15.96 -3.24 -0.05 -18.20 16 9 N -0.58 -18.27 3.00 -818.61 -2.46 -20.73 16 10 C 0.09 2.87 6.14 86.50 0.53 3.40 16 11 C 0.05 1.90 5.17 86.54 0.45 2.34 16 12 N -0.53 -20.92 4.83 -898.87 -4.34 -25.26 16 13 C 0.16 7.28 4.20 85.55 0.36 7.63 16 14 C -0.55 -30.96 8.32 25.60 0.21 -30.75 16 15 H 0.03 1.81 6.12 -2.91 -0.02 1.79 16 16 C 0.01 0.48 5.47 84.66 0.46 0.94 16 17 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 18 Si 0.95 43.17 27.56 68.60 1.89 45.06 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.24 -9.98 6.42 99.48 0.64 -9.34 16 22 C 0.05 1.95 5.25 86.38 0.45 2.40 16 23 C 0.12 3.68 6.61 86.35 0.57 4.25 16 24 C -0.12 -1.26 2.60 -9.48 -0.02 -1.29 16 25 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 26 C -0.14 -1.04 5.76 32.11 0.18 -0.86 16 27 C 0.04 0.43 7.78 72.65 0.57 1.00 16 28 O -0.41 -7.27 11.36 -148.98 -1.69 -8.96 16 29 C 0.05 0.77 7.10 72.45 0.51 1.29 16 30 H 0.09 0.86 7.48 -2.39 -0.02 0.84 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.42 7.05 8.09 -92.71 -0.75 6.30 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.14 4.14 4.43 -39.54 -0.18 3.96 16 36 H 0.01 0.38 6.63 -2.39 -0.02 0.36 16 37 H 0.09 3.14 8.11 -2.39 -0.02 3.12 16 38 H 0.04 1.72 6.82 -2.39 -0.02 1.71 16 39 H 0.04 1.57 7.79 -2.39 -0.02 1.55 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.01 0.36 7.10 -2.39 -0.02 0.34 16 42 H 0.09 3.19 8.06 -2.39 -0.02 3.17 16 43 H 0.09 2.84 7.05 -2.39 -0.02 2.82 16 44 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.08 0.66 8.03 -2.39 -0.02 0.64 16 46 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.06 1.02 7.81 -2.39 -0.02 1.00 16 Total: -1.00 -72.15 388.68 -2.15 -74.31 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.03 Total: 21.60 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.39 Total: 21.02 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -8.61 Total: -119.96 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.78 Total: -42.02 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.89 Total: 45.06 kcal Total: -72.15 -2.15 -74.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119139656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.194 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds