Wall clock time and date at job start Tue Mar 31 2020 22:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47387 * 2 1
4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3
5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1
6 6 H 1.09002 * 109.47251 * 304.99612 * 5 4 2
7 7 C 1.53001 * 109.46823 * 184.99573 * 5 4 2
8 8 N 1.46499 * 109.47207 * 65.00063 * 5 4 2
9 9 C 1.34774 * 119.99826 * 204.99982 * 8 5 4
10 10 O 1.21732 * 120.00132 * 359.97438 * 9 8 5
11 11 C 1.41798 * 119.99959 * 179.97438 * 9 8 5
12 12 C 1.33463 * 118.78973 * 179.97438 * 11 9 8
13 13 O 1.34347 * 123.07949 * 180.43705 * 12 11 9
14 14 C 1.45353 * 117.48124 * 343.65111 * 13 12 11
15 15 C 1.53484 * 108.26630 * 47.47899 * 14 13 12
16 16 C 1.50419 * 118.78750 * 359.73328 * 11 9 8
17 17 N 1.46904 * 109.46874 * 240.00341 * 2 1 3
18 18 C 1.46899 * 111.00029 * 85.00270 * 17 2 1
19 19 C 1.50703 * 109.47107 * 179.97438 * 18 17 2
20 20 O 1.21286 * 120.00016 * 359.97438 * 19 18 17
21 21 N 1.34777 * 120.00161 * 180.02562 * 19 18 17
22 22 C 1.37091 * 120.00108 * 180.02562 * 21 19 18
23 23 H 1.07995 * 120.00333 * 359.97438 * 22 21 19
24 24 C 1.38953 * 119.99712 * 179.97438 * 22 21 19
25 25 N 1.31411 * 120.00268 * 0.02562 * 24 22 21
26 26 Si 1.86806 * 119.99577 * 179.97438 * 24 22 21
27 27 H 1.48498 * 109.47514 * 0.02562 * 26 24 22
28 28 H 1.48504 * 109.46914 * 120.00413 * 26 24 22
29 29 H 1.48498 * 109.47071 * 239.99704 * 26 24 22
30 30 H 1.09007 * 109.47280 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47489 * 299.99436 * 1 2 3
32 32 H 1.09007 * 109.47004 * 59.99740 * 1 2 3
33 33 H 1.08995 * 109.46658 * 304.99898 * 4 2 1
34 34 H 1.09003 * 109.46922 * 64.99638 * 4 2 1
35 35 H 1.09002 * 109.47238 * 300.00046 * 7 5 4
36 36 H 1.09005 * 109.46941 * 60.00437 * 7 5 4
37 37 H 1.09000 * 109.47024 * 179.97438 * 7 5 4
38 38 H 0.97002 * 119.99935 * 24.99423 * 8 5 4
39 39 H 1.07998 * 118.45437 * 0.41549 * 12 11 9
40 40 H 1.09008 * 109.70340 * 167.17055 * 14 13 12
41 41 H 1.08999 * 109.70526 * 287.74207 * 14 13 12
42 42 H 1.08998 * 109.70249 * 56.98709 * 15 14 13
43 43 H 1.09004 * 109.70510 * 177.60701 * 15 14 13
44 44 H 1.09002 * 109.45588 * 282.36043 * 16 11 9
45 45 H 1.09001 * 109.45372 * 42.29996 * 16 11 9
46 46 H 1.00908 * 110.99583 * 208.95182 * 17 2 1
47 47 H 1.09002 * 109.47043 * 299.99792 * 18 17 2
48 48 H 1.09001 * 109.47354 * 59.99854 * 18 17 2
49 49 H 0.97005 * 119.99463 * 359.97438 * 21 19 18
50 50 H 0.96996 * 119.99832 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 3.5648 -0.6134 1.3136
6 1 3.9954 -0.9924 0.3867
7 6 4.0851 -1.4385 2.4923
8 7 3.9479 0.7892 1.4925
9 6 5.1611 1.2134 1.0867
10 8 5.9387 0.4309 0.5720
11 6 5.5318 2.5711 1.2594
12 6 6.7393 2.9649 0.8493
13 8 7.1820 4.2267 0.9782
14 6 6.1954 5.2595 1.2476
15 6 5.2834 4.7697 2.3808
16 6 4.5475 3.5157 1.8930
17 7 2.0196 -0.6925 -1.1995
18 6 2.0824 0.2227 -2.3469
19 6 2.5884 -0.5214 -3.5558
20 8 2.8695 -1.6981 -3.4699
21 7 2.7296 0.1210 -4.7322
22 6 3.1894 -0.5560 -5.8320
23 1 3.4389 -1.6039 -5.7558
24 6 3.3344 0.1062 -7.0450
25 7 3.0313 1.3815 -7.1377
26 14 3.9616 -0.8161 -8.5435
27 1 4.2299 -2.2302 -8.1780
28 1 2.9378 -0.7688 -9.6182
29 1 5.2151 -0.1826 -9.0258
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5137 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.6054 -0.2619 2.1369
34 1 1.7516 -1.7717 1.2054
35 1 3.6545 -1.0596 3.4193
36 1 3.8000 -2.4822 2.3592
37 1 5.1714 -1.3620 2.5380
38 1 3.3284 1.4127 1.9029
39 1 7.3911 2.2348 0.3927
40 1 6.6981 6.1778 1.5514
41 1 5.6026 5.4442 0.3517
42 1 5.8840 4.5295 3.2580
43 1 4.5595 5.5452 2.6312
44 1 3.7908 3.7967 1.1605
45 1 4.0679 3.0257 2.7403
46 1 2.9173 -1.1205 -1.0288
47 1 1.0870 0.6165 -2.5525
48 1 2.7588 1.0463 -2.1182
49 1 2.5051 1.0622 -4.8008
50 1 3.1328 1.8438 -7.9843
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001133921217.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:55:24
Heat of formation + Delta-G solvation = -107.246748 kcal
Electronic energy + Delta-G solvation = -30349.306579 eV
Core-core repulsion = 26183.579320 eV
Total energy + Delta-G solvation = -4165.727259 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.89469 -39.53947 -38.37608 -37.28343 -35.00977 -34.54195 -33.81056 -32.10483
-31.40728 -31.04554 -30.25870 -27.04428 -26.14139 -26.09416 -24.72798 -23.86526
-22.17411 -21.14675 -20.11804 -19.33424 -19.10954 -18.14948 -17.82352 -16.74625
-16.24257 -16.21369 -15.89244 -15.35120 -15.14329 -15.00596 -14.90115 -14.39370
-14.33256 -13.86900 -13.81107 -13.75872 -13.57750 -13.36981 -13.06582 -12.85129
-12.56963 -12.39352 -12.18973 -12.03913 -11.80581 -11.75051 -11.67289 -11.46502
-11.34444 -11.17114 -11.06866 -11.02332 -10.87731 -10.51750 -10.29559 -10.16533
-9.86710 -9.45931 -9.15802 -8.72866 -8.36276 -7.98747 -7.89146 -6.36076
-3.76266 1.22884 2.86553 3.20778 3.28394 3.30752 3.31811 3.38795
3.98260 4.15887 4.21972 4.30631 4.39917 4.46873 4.55045 4.77875
4.78220 4.86153 5.04922 5.06064 5.09820 5.17796 5.21268 5.31055
5.31865 5.39549 5.44124 5.45202 5.58023 5.61790 5.68598 5.69693
5.77579 5.83010 5.87696 5.94714 6.01634 6.04807 6.11739 6.13079
6.30885 6.40699 6.49490 6.91778 7.33036 7.49847 7.61200 7.75477
8.13043 8.26886 8.67953 9.24295 9.60947 10.12896 10.82017
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.008883 B = 0.003119 C = 0.002594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3151.267352 B = 8975.475976 C =10790.745197
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.082 3.918
3 H 0.041 0.959
4 C -0.128 4.128
5 C 0.135 3.865
6 H 0.092 0.908
7 C -0.159 4.159
8 N -0.724 5.724
9 C 0.571 3.429
10 O -0.552 6.552
11 C -0.322 4.322
12 C 0.163 3.837
13 O -0.310 6.310
14 C 0.050 3.950
15 C -0.156 4.156
16 C -0.072 4.072
17 N -0.663 5.663
18 C 0.053 3.947
19 C 0.443 3.557
20 O -0.581 6.581
21 N -0.565 5.565
22 C -0.296 4.296
23 H 0.103 0.897
24 C 0.021 3.979
25 N -0.903 5.903
26 Si 0.929 3.071
27 H -0.268 1.268
28 H -0.282 1.282
29 H -0.282 1.282
30 H 0.062 0.938
31 H 0.050 0.950
32 H 0.055 0.945
33 H 0.072 0.928
34 H 0.090 0.910
35 H 0.053 0.947
36 H 0.067 0.933
37 H 0.060 0.940
38 H 0.396 0.604
39 H 0.181 0.819
40 H 0.109 0.891
41 H 0.076 0.924
42 H 0.078 0.922
43 H 0.086 0.914
44 H 0.075 0.925
45 H 0.077 0.923
46 H 0.349 0.651
47 H 0.084 0.916
48 H 0.039 0.961
49 H 0.391 0.609
50 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.070 9.756 23.689 25.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.028 4.028
3 H 0.059 0.941
4 C -0.167 4.167
5 C 0.030 3.970
6 H 0.110 0.890
7 C -0.218 4.218
8 N -0.377 5.377
9 C 0.362 3.638
10 O -0.433 6.433
11 C -0.326 4.326
12 C 0.095 3.905
13 O -0.220 6.220
14 C -0.024 4.024
15 C -0.193 4.193
16 C -0.109 4.109
17 N -0.298 5.298
18 C -0.080 4.080
19 C 0.228 3.772
20 O -0.465 6.465
21 N -0.202 5.202
22 C -0.426 4.426
23 H 0.121 0.879
24 C -0.180 4.180
25 N -0.545 5.545
26 Si 0.756 3.244
27 H -0.192 1.192
28 H -0.208 1.208
29 H -0.208 1.208
30 H 0.081 0.919
31 H 0.069 0.931
32 H 0.074 0.926
33 H 0.091 0.909
34 H 0.108 0.892
35 H 0.072 0.928
36 H 0.086 0.914
37 H 0.079 0.921
38 H 0.231 0.769
39 H 0.198 0.802
40 H 0.127 0.873
41 H 0.094 0.906
42 H 0.096 0.904
43 H 0.105 0.895
44 H 0.094 0.906
45 H 0.095 0.905
46 H 0.171 0.829
47 H 0.102 0.898
48 H 0.057 0.943
49 H 0.224 0.776
50 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 0.265 8.358 23.030 24.501
hybrid contribution 0.259 1.139 -0.422 1.242
sum 0.524 9.497 22.608 24.527
Atomic orbital electron populations
1.21799 0.94640 1.02458 1.00869 1.21525 0.95832 0.95828 0.89609
0.94131 1.22099 0.93607 1.03094 0.97860 1.21054 0.94732 0.81196
1.00017 0.88962 1.22136 1.01946 1.00068 0.97634 1.45990 1.16980
1.11100 1.63622 1.16573 0.81794 0.87637 0.77774 1.90853 1.50999
1.56863 1.44553 1.20019 0.99762 0.96421 1.16415 1.23045 0.94635
0.84943 0.87881 1.86289 1.36994 1.15046 1.83697 1.23585 0.90651
0.89389 0.98735 1.22205 0.99802 0.98624 0.98692 1.20278 0.96579
0.94103 0.99970 1.60233 1.34905 1.31907 1.02724 1.21681 1.00902
0.93935 0.91481 1.19822 0.84736 0.88199 0.84415 1.90519 1.55097
1.16172 1.84720 1.41857 1.57969 1.12369 1.08025 1.19759 1.39599
0.96452 0.86772 0.87894 1.25248 0.97774 0.95779 0.99208 1.69622
1.49053 1.08857 1.26996 0.85810 0.78202 0.79681 0.80722 1.19200
1.20792 1.20788 0.91859 0.93072 0.92635 0.90916 0.89163 0.92752
0.91428 0.92086 0.76938 0.80218 0.87324 0.90572 0.90352 0.89503
0.90626 0.90496 0.82915 0.89808 0.94269 0.77570 0.92025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.56 9.41 37.16 0.35 -1.21 16
2 C 0.08 1.00 2.59 -67.71 -0.18 0.83 16
3 H 0.04 0.49 7.28 -51.93 -0.38 0.11 16
4 C -0.13 -1.26 4.34 -26.73 -0.12 -1.38 16
5 C 0.13 1.53 2.48 -67.93 -0.17 1.37 16
6 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16
7 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16
8 N -0.72 -7.66 4.36 -56.65 -0.25 -7.91 16
9 C 0.57 7.59 7.50 -14.90 -0.11 7.48 16
10 O -0.55 -9.69 15.58 5.16 0.08 -9.61 16
11 C -0.32 -3.45 5.69 -105.07 -0.60 -4.05 16
12 C 0.16 1.79 10.47 29.06 0.30 2.10 16
13 O -0.31 -3.05 10.48 -14.88 -0.16 -3.20 16
14 C 0.05 0.33 7.15 37.41 0.27 0.60 16
15 C -0.16 -0.87 6.24 -26.30 -0.16 -1.04 16
16 C -0.07 -0.52 5.10 -27.84 -0.14 -0.66 16
17 N -0.66 -11.19 5.93 -107.99 -0.64 -11.83 16
18 C 0.05 1.00 5.97 -4.98 -0.03 0.97 16
19 C 0.44 11.05 7.82 -10.98 -0.09 10.96 16
20 O -0.58 -16.58 15.78 5.55 0.09 -16.49 16
21 N -0.57 -14.98 5.29 -10.97 -0.06 -15.04 16
22 C -0.30 -8.58 9.68 -14.94 -0.14 -8.72 16
23 H 0.10 3.14 7.16 -52.49 -0.38 2.76 16
24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
25 N -0.90 -25.24 13.05 55.50 0.72 -24.52 16
26 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16
27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
29 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.05 0.67 7.45 -51.92 -0.39 0.28 16
33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
38 H 0.40 3.12 6.71 -40.82 -0.27 2.85 16
39 H 0.18 2.10 7.21 -52.49 -0.38 1.72 16
40 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16
41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
43 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16
44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.08 0.45 7.14 -51.93 -0.37 0.08 16
46 H 0.35 6.40 6.11 -39.29 -0.24 6.16 16
47 H 0.08 1.46 7.44 -51.93 -0.39 1.07 16
48 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16
49 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16
50 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
LS Contribution 404.93 15.07 6.10 6.10
Total: -1.00 -35.20 404.93 -7.72 -42.92
By element:
Atomic # 1 Polarization: 24.45 SS G_CDS: -8.04 Total: 16.42 kcal
Atomic # 6 Polarization: 7.03 SS G_CDS: -0.56 Total: 6.47 kcal
Atomic # 7 Polarization: -59.07 SS G_CDS: -0.22 Total: -59.29 kcal
Atomic # 8 Polarization: -29.31 SS G_CDS: 0.01 Total: -29.30 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -35.20 -7.72 -42.92 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133921217.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.327 kcal
(2) G-P(sol) polarization free energy of solvation -35.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.522 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds