Wall clock time and date at job start Tue Mar 31 2020 22:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 H 1.09002 * 109.47251 * 304.99612 * 5 4 2 7 7 C 1.53001 * 109.46823 * 184.99573 * 5 4 2 8 8 N 1.46499 * 109.47207 * 65.00063 * 5 4 2 9 9 C 1.34774 * 119.99826 * 204.99982 * 8 5 4 10 10 O 1.21732 * 120.00132 * 359.97438 * 9 8 5 11 11 C 1.41798 * 119.99959 * 179.97438 * 9 8 5 12 12 C 1.33463 * 118.78973 * 179.97438 * 11 9 8 13 13 O 1.34347 * 123.07949 * 180.43705 * 12 11 9 14 14 C 1.45353 * 117.48124 * 343.65111 * 13 12 11 15 15 C 1.53484 * 108.26630 * 47.47899 * 14 13 12 16 16 C 1.50419 * 118.78750 * 359.73328 * 11 9 8 17 17 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 18 18 C 1.46899 * 111.00029 * 85.00270 * 17 2 1 19 19 C 1.50703 * 109.47107 * 179.97438 * 18 17 2 20 20 O 1.21286 * 120.00016 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00108 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00333 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99712 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00268 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99577 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47514 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46914 * 120.00413 * 26 24 22 29 29 H 1.48498 * 109.47071 * 239.99704 * 26 24 22 30 30 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 32 32 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 33 33 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 34 34 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 35 35 H 1.09002 * 109.47238 * 300.00046 * 7 5 4 36 36 H 1.09005 * 109.46941 * 60.00437 * 7 5 4 37 37 H 1.09000 * 109.47024 * 179.97438 * 7 5 4 38 38 H 0.97002 * 119.99935 * 24.99423 * 8 5 4 39 39 H 1.07998 * 118.45437 * 0.41549 * 12 11 9 40 40 H 1.09008 * 109.70340 * 167.17055 * 14 13 12 41 41 H 1.08999 * 109.70526 * 287.74207 * 14 13 12 42 42 H 1.08998 * 109.70249 * 56.98709 * 15 14 13 43 43 H 1.09004 * 109.70510 * 177.60701 * 15 14 13 44 44 H 1.09002 * 109.45588 * 282.36043 * 16 11 9 45 45 H 1.09001 * 109.45372 * 42.29996 * 16 11 9 46 46 H 1.00908 * 110.99583 * 208.95182 * 17 2 1 47 47 H 1.09002 * 109.47043 * 299.99792 * 18 17 2 48 48 H 1.09001 * 109.47354 * 59.99854 * 18 17 2 49 49 H 0.97005 * 119.99463 * 359.97438 * 21 19 18 50 50 H 0.96996 * 119.99832 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4385 2.4923 8 7 3.9479 0.7892 1.4925 9 6 5.1611 1.2134 1.0867 10 8 5.9387 0.4309 0.5720 11 6 5.5318 2.5711 1.2594 12 6 6.7393 2.9649 0.8493 13 8 7.1820 4.2267 0.9782 14 6 6.1954 5.2595 1.2476 15 6 5.2834 4.7697 2.3808 16 6 4.5475 3.5157 1.8930 17 7 2.0196 -0.6925 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5884 -0.5214 -3.5558 20 8 2.8695 -1.6981 -3.4699 21 7 2.7296 0.1210 -4.7322 22 6 3.1894 -0.5560 -5.8320 23 1 3.4389 -1.6039 -5.7558 24 6 3.3344 0.1062 -7.0450 25 7 3.0313 1.3815 -7.1377 26 14 3.9616 -0.8161 -8.5435 27 1 4.2299 -2.2302 -8.1780 28 1 2.9378 -0.7688 -9.6182 29 1 5.2151 -0.1826 -9.0258 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2619 2.1369 34 1 1.7516 -1.7717 1.2054 35 1 3.6545 -1.0596 3.4193 36 1 3.8000 -2.4822 2.3592 37 1 5.1714 -1.3620 2.5380 38 1 3.3284 1.4127 1.9029 39 1 7.3911 2.2348 0.3927 40 1 6.6981 6.1778 1.5514 41 1 5.6026 5.4442 0.3517 42 1 5.8840 4.5295 3.2580 43 1 4.5595 5.5452 2.6312 44 1 3.7908 3.7967 1.1605 45 1 4.0679 3.0257 2.7403 46 1 2.9173 -1.1205 -1.0288 47 1 1.0870 0.6165 -2.5525 48 1 2.7588 1.0463 -2.1182 49 1 2.5051 1.0622 -4.8008 50 1 3.1328 1.8438 -7.9843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133921217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:24 Heat of formation + Delta-G solvation = -107.246748 kcal Electronic energy + Delta-G solvation = -30349.306579 eV Core-core repulsion = 26183.579320 eV Total energy + Delta-G solvation = -4165.727259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89469 -39.53947 -38.37608 -37.28343 -35.00977 -34.54195 -33.81056 -32.10483 -31.40728 -31.04554 -30.25870 -27.04428 -26.14139 -26.09416 -24.72798 -23.86526 -22.17411 -21.14675 -20.11804 -19.33424 -19.10954 -18.14948 -17.82352 -16.74625 -16.24257 -16.21369 -15.89244 -15.35120 -15.14329 -15.00596 -14.90115 -14.39370 -14.33256 -13.86900 -13.81107 -13.75872 -13.57750 -13.36981 -13.06582 -12.85129 -12.56963 -12.39352 -12.18973 -12.03913 -11.80581 -11.75051 -11.67289 -11.46502 -11.34444 -11.17114 -11.06866 -11.02332 -10.87731 -10.51750 -10.29559 -10.16533 -9.86710 -9.45931 -9.15802 -8.72866 -8.36276 -7.98747 -7.89146 -6.36076 -3.76266 1.22884 2.86553 3.20778 3.28394 3.30752 3.31811 3.38795 3.98260 4.15887 4.21972 4.30631 4.39917 4.46873 4.55045 4.77875 4.78220 4.86153 5.04922 5.06064 5.09820 5.17796 5.21268 5.31055 5.31865 5.39549 5.44124 5.45202 5.58023 5.61790 5.68598 5.69693 5.77579 5.83010 5.87696 5.94714 6.01634 6.04807 6.11739 6.13079 6.30885 6.40699 6.49490 6.91778 7.33036 7.49847 7.61200 7.75477 8.13043 8.26886 8.67953 9.24295 9.60947 10.12896 10.82017 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003119 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.267352 B = 8975.475976 C =10790.745197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.128 4.128 5 C 0.135 3.865 6 H 0.092 0.908 7 C -0.159 4.159 8 N -0.724 5.724 9 C 0.571 3.429 10 O -0.552 6.552 11 C -0.322 4.322 12 C 0.163 3.837 13 O -0.310 6.310 14 C 0.050 3.950 15 C -0.156 4.156 16 C -0.072 4.072 17 N -0.663 5.663 18 C 0.053 3.947 19 C 0.443 3.557 20 O -0.581 6.581 21 N -0.565 5.565 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.396 0.604 39 H 0.181 0.819 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.349 0.651 47 H 0.084 0.916 48 H 0.039 0.961 49 H 0.391 0.609 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 9.756 23.689 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 H 0.059 0.941 4 C -0.167 4.167 5 C 0.030 3.970 6 H 0.110 0.890 7 C -0.218 4.218 8 N -0.377 5.377 9 C 0.362 3.638 10 O -0.433 6.433 11 C -0.326 4.326 12 C 0.095 3.905 13 O -0.220 6.220 14 C -0.024 4.024 15 C -0.193 4.193 16 C -0.109 4.109 17 N -0.298 5.298 18 C -0.080 4.080 19 C 0.228 3.772 20 O -0.465 6.465 21 N -0.202 5.202 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.231 0.769 39 H 0.198 0.802 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.171 0.829 47 H 0.102 0.898 48 H 0.057 0.943 49 H 0.224 0.776 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.265 8.358 23.030 24.501 hybrid contribution 0.259 1.139 -0.422 1.242 sum 0.524 9.497 22.608 24.527 Atomic orbital electron populations 1.21799 0.94640 1.02458 1.00869 1.21525 0.95832 0.95828 0.89609 0.94131 1.22099 0.93607 1.03094 0.97860 1.21054 0.94732 0.81196 1.00017 0.88962 1.22136 1.01946 1.00068 0.97634 1.45990 1.16980 1.11100 1.63622 1.16573 0.81794 0.87637 0.77774 1.90853 1.50999 1.56863 1.44553 1.20019 0.99762 0.96421 1.16415 1.23045 0.94635 0.84943 0.87881 1.86289 1.36994 1.15046 1.83697 1.23585 0.90651 0.89389 0.98735 1.22205 0.99802 0.98624 0.98692 1.20278 0.96579 0.94103 0.99970 1.60233 1.34905 1.31907 1.02724 1.21681 1.00902 0.93935 0.91481 1.19822 0.84736 0.88199 0.84415 1.90519 1.55097 1.16172 1.84720 1.41857 1.57969 1.12369 1.08025 1.19759 1.39599 0.96452 0.86772 0.87894 1.25248 0.97774 0.95779 0.99208 1.69622 1.49053 1.08857 1.26996 0.85810 0.78202 0.79681 0.80722 1.19200 1.20792 1.20788 0.91859 0.93072 0.92635 0.90916 0.89163 0.92752 0.91428 0.92086 0.76938 0.80218 0.87324 0.90572 0.90352 0.89503 0.90626 0.90496 0.82915 0.89808 0.94269 0.77570 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.41 37.16 0.35 -1.21 16 2 C 0.08 1.00 2.59 -67.71 -0.18 0.83 16 3 H 0.04 0.49 7.28 -51.93 -0.38 0.11 16 4 C -0.13 -1.26 4.34 -26.73 -0.12 -1.38 16 5 C 0.13 1.53 2.48 -67.93 -0.17 1.37 16 6 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 7 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 8 N -0.72 -7.66 4.36 -56.65 -0.25 -7.91 16 9 C 0.57 7.59 7.50 -14.90 -0.11 7.48 16 10 O -0.55 -9.69 15.58 5.16 0.08 -9.61 16 11 C -0.32 -3.45 5.69 -105.07 -0.60 -4.05 16 12 C 0.16 1.79 10.47 29.06 0.30 2.10 16 13 O -0.31 -3.05 10.48 -14.88 -0.16 -3.20 16 14 C 0.05 0.33 7.15 37.41 0.27 0.60 16 15 C -0.16 -0.87 6.24 -26.30 -0.16 -1.04 16 16 C -0.07 -0.52 5.10 -27.84 -0.14 -0.66 16 17 N -0.66 -11.19 5.93 -107.99 -0.64 -11.83 16 18 C 0.05 1.00 5.97 -4.98 -0.03 0.97 16 19 C 0.44 11.05 7.82 -10.98 -0.09 10.96 16 20 O -0.58 -16.58 15.78 5.55 0.09 -16.49 16 21 N -0.57 -14.98 5.29 -10.97 -0.06 -15.04 16 22 C -0.30 -8.58 9.68 -14.94 -0.14 -8.72 16 23 H 0.10 3.14 7.16 -52.49 -0.38 2.76 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.24 13.05 55.50 0.72 -24.52 16 26 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.67 7.45 -51.92 -0.39 0.28 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 3.12 6.71 -40.82 -0.27 2.85 16 39 H 0.18 2.10 7.21 -52.49 -0.38 1.72 16 40 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.45 7.14 -51.93 -0.37 0.08 16 46 H 0.35 6.40 6.11 -39.29 -0.24 6.16 16 47 H 0.08 1.46 7.44 -51.93 -0.39 1.07 16 48 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 49 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16 50 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -35.20 404.93 -7.72 -42.92 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -8.04 Total: 16.42 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.56 Total: 6.47 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.22 Total: -59.29 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: 0.01 Total: -29.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.20 -7.72 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133921217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.327 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds