Wall clock time and date at job start Tue Mar 31 2020 22:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 H 1.09002 * 109.47251 * 304.99612 * 5 4 2 7 7 C 1.53001 * 109.46823 * 184.99573 * 5 4 2 8 8 N 1.46499 * 109.47207 * 65.00063 * 5 4 2 9 9 C 1.34774 * 119.99826 * 204.99982 * 8 5 4 10 10 O 1.21732 * 120.00132 * 359.97438 * 9 8 5 11 11 C 1.41798 * 119.99959 * 179.97438 * 9 8 5 12 12 C 1.33463 * 118.78973 * 179.97438 * 11 9 8 13 13 O 1.34347 * 123.07949 * 180.43705 * 12 11 9 14 14 C 1.45353 * 117.48124 * 343.65111 * 13 12 11 15 15 C 1.53484 * 108.26630 * 47.47899 * 14 13 12 16 16 C 1.50419 * 118.78750 * 359.73328 * 11 9 8 17 17 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 18 18 C 1.46899 * 111.00029 * 85.00270 * 17 2 1 19 19 C 1.50703 * 109.47107 * 179.97438 * 18 17 2 20 20 O 1.21286 * 120.00016 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00108 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00333 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99712 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00268 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99577 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47514 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46914 * 120.00413 * 26 24 22 29 29 H 1.48498 * 109.47071 * 239.99704 * 26 24 22 30 30 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 32 32 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 33 33 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 34 34 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 35 35 H 1.09002 * 109.47238 * 300.00046 * 7 5 4 36 36 H 1.09005 * 109.46941 * 60.00437 * 7 5 4 37 37 H 1.09000 * 109.47024 * 179.97438 * 7 5 4 38 38 H 0.97002 * 119.99935 * 24.99423 * 8 5 4 39 39 H 1.07998 * 118.45437 * 0.41549 * 12 11 9 40 40 H 1.09008 * 109.70340 * 167.17055 * 14 13 12 41 41 H 1.08999 * 109.70526 * 287.74207 * 14 13 12 42 42 H 1.08998 * 109.70249 * 56.98709 * 15 14 13 43 43 H 1.09004 * 109.70510 * 177.60701 * 15 14 13 44 44 H 1.09002 * 109.45588 * 282.36043 * 16 11 9 45 45 H 1.09001 * 109.45372 * 42.29996 * 16 11 9 46 46 H 1.00908 * 110.99583 * 208.95182 * 17 2 1 47 47 H 1.09002 * 109.47043 * 299.99792 * 18 17 2 48 48 H 1.09001 * 109.47354 * 59.99854 * 18 17 2 49 49 H 0.97005 * 119.99463 * 359.97438 * 21 19 18 50 50 H 0.96996 * 119.99832 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4385 2.4923 8 7 3.9479 0.7892 1.4925 9 6 5.1611 1.2134 1.0867 10 8 5.9387 0.4309 0.5720 11 6 5.5318 2.5711 1.2594 12 6 6.7393 2.9649 0.8493 13 8 7.1820 4.2267 0.9782 14 6 6.1954 5.2595 1.2476 15 6 5.2834 4.7697 2.3808 16 6 4.5475 3.5157 1.8930 17 7 2.0196 -0.6925 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5884 -0.5214 -3.5558 20 8 2.8695 -1.6981 -3.4699 21 7 2.7296 0.1210 -4.7322 22 6 3.1894 -0.5560 -5.8320 23 1 3.4389 -1.6039 -5.7558 24 6 3.3344 0.1062 -7.0450 25 7 3.0313 1.3815 -7.1377 26 14 3.9616 -0.8161 -8.5435 27 1 4.2299 -2.2302 -8.1780 28 1 2.9378 -0.7688 -9.6182 29 1 5.2151 -0.1826 -9.0258 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2619 2.1369 34 1 1.7516 -1.7717 1.2054 35 1 3.6545 -1.0596 3.4193 36 1 3.8000 -2.4822 2.3592 37 1 5.1714 -1.3620 2.5380 38 1 3.3284 1.4127 1.9029 39 1 7.3911 2.2348 0.3927 40 1 6.6981 6.1778 1.5514 41 1 5.6026 5.4442 0.3517 42 1 5.8840 4.5295 3.2580 43 1 4.5595 5.5452 2.6312 44 1 3.7908 3.7967 1.1605 45 1 4.0679 3.0257 2.7403 46 1 2.9173 -1.1205 -1.0288 47 1 1.0870 0.6165 -2.5525 48 1 2.7588 1.0463 -2.1182 49 1 2.5051 1.0622 -4.8008 50 1 3.1328 1.8438 -7.9843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133921217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:23 Heat of formation + Delta-G solvation = -134.460476 kcal Electronic energy + Delta-G solvation = -30350.486655 eV Core-core repulsion = 26183.579320 eV Total energy + Delta-G solvation = -4166.907335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73860 -40.48407 -40.11908 -38.54105 -36.26051 -35.83160 -35.24005 -33.34386 -32.88442 -32.31332 -31.24918 -28.21482 -27.59181 -26.71829 -25.76442 -25.41927 -22.95171 -22.08038 -21.16515 -21.11476 -20.03312 -19.90336 -18.91785 -17.91377 -17.58483 -17.12052 -16.97894 -16.62813 -16.52732 -16.18704 -15.94595 -15.81487 -15.54860 -15.43023 -14.93944 -14.67507 -14.53569 -14.33954 -14.06189 -13.92693 -13.63320 -13.58534 -13.47361 -13.31051 -13.13983 -12.91513 -12.83284 -12.68177 -12.44424 -12.33146 -12.16073 -12.11454 -11.89964 -11.81549 -11.63740 -11.54579 -11.46875 -10.90748 -10.38462 -10.14625 -10.04696 -9.51542 -9.31851 -8.49697 -5.98607 0.34191 1.34103 1.38958 1.53879 2.00906 2.12744 2.27168 2.36180 2.45462 2.92697 3.16867 3.48284 3.64833 3.71486 3.75158 3.89179 3.94860 4.14160 4.18734 4.23752 4.28478 4.36308 4.41351 4.41936 4.50381 4.53733 4.57525 4.63817 4.72002 4.76519 4.83927 4.91627 4.96610 5.01578 5.07649 5.09372 5.17849 5.21053 5.23853 5.27189 5.37984 5.48825 5.57376 5.89803 6.13127 6.18507 6.38525 6.56717 6.62866 7.09333 7.32126 7.51660 8.07575 8.68174 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003119 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.267352 B = 8975.475976 C =10790.745197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.049 0.951 4 C -0.116 4.116 5 C 0.135 3.865 6 H 0.048 0.952 7 C -0.153 4.153 8 N -0.707 5.707 9 C 0.562 3.438 10 O -0.607 6.607 11 C -0.325 4.325 12 C 0.157 3.843 13 O -0.322 6.322 14 C 0.040 3.960 15 C -0.149 4.149 16 C -0.072 4.072 17 N -0.676 5.676 18 C 0.070 3.930 19 C 0.435 3.565 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.275 1.275 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.337 0.663 47 H 0.105 0.895 48 H 0.050 0.950 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 11.805 25.418 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.067 0.933 4 C -0.154 4.154 5 C 0.030 3.970 6 H 0.067 0.933 7 C -0.211 4.211 8 N -0.360 5.360 9 C 0.355 3.645 10 O -0.492 6.492 11 C -0.329 4.329 12 C 0.088 3.912 13 O -0.232 6.232 14 C -0.033 4.033 15 C -0.186 4.186 16 C -0.109 4.109 17 N -0.311 5.311 18 C -0.063 4.063 19 C 0.223 3.777 20 O -0.510 6.510 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.192 1.192 29 H -0.195 1.195 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.251 0.749 39 H 0.177 0.823 40 H 0.151 0.849 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.134 0.866 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.157 0.843 47 H 0.123 0.877 48 H 0.068 0.932 49 H 0.229 0.771 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.607 10.471 24.797 26.965 hybrid contribution 0.826 0.534 -0.933 1.355 sum -0.781 11.005 23.864 26.291 Atomic orbital electron populations 1.21793 0.93276 1.02265 1.02045 1.21719 0.96694 0.96037 0.88476 0.93298 1.22047 0.91970 1.03208 0.98169 1.20979 0.95848 0.81567 0.98629 0.93345 1.22071 1.00408 1.00424 0.98204 1.45830 1.16358 1.11175 1.62627 1.17060 0.82000 0.88344 0.77123 1.90827 1.52746 1.58457 1.47170 1.20164 1.00417 0.95812 1.16555 1.22855 0.94712 0.85506 0.88141 1.86268 1.38514 1.14888 1.83575 1.23944 0.90774 0.89184 0.99439 1.22209 0.99972 0.98507 0.97904 1.20391 0.95864 0.94108 1.00497 1.60302 1.34285 1.32381 1.04086 1.21506 1.01663 0.93513 0.89582 1.20917 0.83267 0.88033 0.85491 1.90482 1.56594 1.18308 1.85578 1.41920 1.58280 1.12485 1.08263 1.19703 1.42253 0.95926 0.88624 0.90550 1.26054 0.97119 0.96661 1.01341 1.69675 1.48582 1.09648 1.28148 0.84871 0.78278 0.77973 0.77198 1.19947 1.19192 1.19494 0.92748 0.89555 0.93803 0.86922 0.89323 0.90005 0.90875 0.94558 0.74891 0.82308 0.84901 0.90465 0.90467 0.86599 0.89893 0.88660 0.84257 0.87728 0.93201 0.77067 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.41 71.98 0.68 -1.94 16 2 C 0.08 1.77 2.59 44.91 0.12 1.89 16 3 H 0.05 1.03 7.28 -2.39 -0.02 1.01 16 4 C -0.12 -1.99 4.34 30.59 0.13 -1.86 16 5 C 0.13 3.00 2.48 44.99 0.11 3.11 16 6 H 0.05 1.55 5.72 -2.39 -0.01 1.54 16 7 C -0.15 -2.97 9.48 71.98 0.68 -2.29 16 8 N -0.71 -14.15 4.36 -451.36 -1.97 -16.12 16 9 C 0.56 15.30 7.50 85.12 0.64 15.94 16 10 O -0.61 -22.96 15.58 -4.45 -0.07 -23.03 16 11 C -0.32 -6.90 5.69 -20.15 -0.11 -7.01 16 12 C 0.16 3.61 10.47 66.74 0.70 4.31 16 13 O -0.32 -6.30 10.48 -76.16 -0.80 -7.10 16 14 C 0.04 0.44 7.15 72.14 0.52 0.96 16 15 C -0.15 -1.22 6.24 30.88 0.19 -1.03 16 16 C -0.07 -0.84 5.10 29.88 0.15 -0.69 16 17 N -0.68 -22.83 5.93 -495.57 -2.94 -25.77 16 18 C 0.07 2.64 5.97 85.56 0.51 3.15 16 19 C 0.44 22.45 7.82 87.66 0.69 23.14 16 20 O -0.62 -37.21 15.78 -3.05 -0.05 -37.26 16 21 N -0.57 -31.27 5.29 -306.99 -1.62 -32.90 16 22 C -0.34 -20.08 9.68 84.04 0.81 -19.27 16 23 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -51.15 13.05 21.66 0.28 -50.87 16 26 Si 0.99 44.63 29.55 68.60 2.03 46.66 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.95 7.45 -2.38 -0.02 0.93 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.41 5.26 6.71 -92.71 -0.62 4.64 16 39 H 0.16 4.20 7.21 -2.91 -0.02 4.18 16 40 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.10 0.76 7.14 -2.39 -0.02 0.75 16 46 H 0.34 12.87 6.11 -89.69 -0.55 12.32 16 47 H 0.10 3.52 7.44 -2.39 -0.02 3.50 16 48 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 49 H 0.40 20.46 7.90 -92.70 -0.73 19.73 16 50 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -81.25 404.93 0.21 -81.04 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: -0.93 Total: 47.13 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.28 Total: 18.22 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -6.25 Total: -125.65 kcal Atomic # 8 Polarization: -66.47 SS G_CDS: -0.92 Total: -67.38 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -81.25 0.21 -81.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133921217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.425 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds