Wall clock time and date at job start Tue Mar 31 2020 22:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46542 * 2 1 4 4 C 1.52999 * 109.47216 * 119.99743 * 2 1 3 5 5 C 1.53007 * 109.46889 * 185.00404 * 4 2 1 6 6 H 1.08999 * 109.47169 * 304.99992 * 5 4 2 7 7 C 1.52997 * 109.46756 * 185.00453 * 5 4 2 8 8 N 1.46498 * 109.47003 * 65.00196 * 5 4 2 9 9 C 1.34774 * 119.99586 * 204.99712 * 8 5 4 10 10 O 1.21281 * 120.00281 * 0.02562 * 9 8 5 11 11 C 1.50698 * 119.99937 * 179.97438 * 9 8 5 12 12 N 1.46501 * 109.47302 * 179.97438 * 11 9 8 13 13 C 1.33884 * 122.75641 * 90.02975 * 12 11 9 14 14 O 1.21221 * 125.39565 * 359.73039 * 13 12 11 15 15 C 1.51314 * 109.20132 * 180.02562 * 13 12 11 16 16 C 1.54226 * 103.56033 * 0.02562 * 15 13 12 17 17 C 1.53002 * 110.60385 * 241.48731 * 16 15 13 18 18 C 1.52994 * 110.61018 * 118.51532 * 16 15 13 19 19 C 1.33875 * 122.76632 * 270.02883 * 12 11 9 20 20 O 1.21221 * 125.39767 * 359.97438 * 19 12 11 21 21 N 1.46497 * 109.47443 * 240.00194 * 2 1 3 22 22 C 1.36939 * 119.99873 * 84.99657 * 21 2 1 23 23 H 1.07999 * 120.00413 * 359.97438 * 22 21 2 24 24 C 1.38817 * 119.99909 * 180.02562 * 22 21 2 25 25 N 1.31614 * 119.99784 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99983 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47016 * 90.00200 * 26 24 22 28 28 H 1.48499 * 109.46980 * 210.00372 * 26 24 22 29 29 H 1.48505 * 109.46960 * 330.00330 * 26 24 22 30 30 H 1.09001 * 109.47808 * 60.00052 * 1 2 3 31 31 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47575 * 299.99274 * 1 2 3 33 33 H 1.09000 * 109.46946 * 65.00822 * 4 2 1 34 34 H 1.08994 * 109.47232 * 305.00322 * 4 2 1 35 35 H 1.09002 * 109.47195 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47203 * 299.99822 * 7 5 4 37 37 H 1.09001 * 109.47370 * 59.99893 * 7 5 4 38 38 H 0.96994 * 119.99866 * 25.00090 * 8 5 4 39 39 H 1.08999 * 109.46856 * 60.00466 * 11 9 8 40 40 H 1.08994 * 109.47318 * 300.00369 * 11 9 8 41 41 H 1.09000 * 110.60562 * 118.51746 * 15 13 12 42 42 H 1.08999 * 110.60532 * 241.47708 * 15 13 12 43 43 H 1.09001 * 109.47182 * 175.58888 * 17 16 15 44 44 H 1.09009 * 109.46699 * 295.58191 * 17 16 15 45 45 H 1.08994 * 109.47857 * 55.58195 * 17 16 15 46 46 H 1.09000 * 109.47489 * 304.41539 * 18 16 15 47 47 H 1.09005 * 109.46916 * 64.41334 * 18 16 15 48 48 H 1.09000 * 109.47292 * 184.40987 * 18 16 15 49 49 H 0.96996 * 120.00431 * 264.99650 * 21 2 1 50 50 H 0.97000 * 119.99852 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3137 6 1 3.9955 -0.9920 0.3868 7 6 4.0852 -1.4381 2.4924 8 7 3.9478 0.7896 1.4924 9 6 5.1610 1.2138 1.0867 10 8 5.9355 0.4344 0.5732 11 6 5.5548 2.6568 1.2700 12 7 6.9100 2.8627 0.7529 13 6 7.1559 3.2096 -0.5166 14 8 6.3150 3.3867 -1.3716 15 6 8.6502 3.3386 -0.7168 16 6 9.2314 3.0018 0.6716 17 6 10.0047 4.1955 1.2355 18 6 10.1285 1.7650 0.5943 19 6 8.0042 2.7195 1.5107 20 8 8.0110 2.4116 2.6831 21 7 2.0183 -0.6905 -1.1961 22 6 2.1491 -0.0073 -2.3757 23 1 1.8918 1.0404 -2.4244 24 6 2.6114 -0.6618 -3.5093 25 7 2.7375 -0.0050 -4.6429 26 14 3.0558 -2.4742 -3.4254 27 1 1.8584 -3.2927 -3.7443 28 1 4.1309 -2.7662 -4.4073 29 1 3.5313 -2.8045 -2.0579 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.7517 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1369 35 1 5.1715 -1.3608 2.5386 36 1 3.6546 -1.0592 3.4194 37 1 3.8002 -2.4818 2.3594 38 1 3.3283 1.4129 1.9028 39 1 5.5289 2.9086 2.3302 40 1 4.8576 3.2954 0.7277 41 1 9.0004 2.6246 -1.4622 42 1 8.9121 4.3563 -1.0062 43 1 10.3400 3.9662 2.2470 44 1 10.8692 4.3996 0.6037 45 1 9.3561 5.0712 1.2576 46 1 9.5668 0.9347 0.1662 47 1 10.9924 1.9815 -0.0343 48 1 10.4658 1.4976 1.5957 49 1 2.2491 -1.6316 -1.1527 50 1 3.0609 -0.4623 -5.4349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134391702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:54 Heat of formation + Delta-G solvation = -94.191006 kcal Electronic energy + Delta-G solvation = -31386.239597 eV Core-core repulsion = 27221.078477 eV Total energy + Delta-G solvation = -4165.161120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25544 -39.55104 -38.65885 -37.04552 -36.29266 -35.23472 -34.53416 -32.19471 -31.21584 -29.65798 -29.16829 -27.79644 -27.35444 -26.40069 -24.36952 -23.28757 -22.10269 -21.12993 -20.47521 -19.82904 -19.30710 -17.83854 -17.41839 -17.29538 -16.40911 -16.15376 -15.82395 -15.23251 -15.01581 -14.63885 -14.43751 -14.34415 -14.17813 -13.96761 -13.88196 -13.58697 -13.47632 -13.15850 -12.79389 -12.62953 -12.54472 -12.47012 -12.27134 -12.04584 -12.02168 -11.96509 -11.79134 -11.70295 -11.43262 -11.21388 -10.90306 -10.65173 -10.54651 -10.46221 -10.36886 -10.25374 -10.02336 -9.93825 -9.50305 -9.41915 -8.85784 -8.82986 -7.18875 -5.67649 -3.02721 1.47977 2.21218 2.64887 2.78351 3.39970 3.43899 3.46445 3.51580 3.77612 4.01417 4.13259 4.42512 4.67408 4.73847 4.75303 4.88365 5.01129 5.06995 5.16891 5.22463 5.25029 5.26887 5.30918 5.34045 5.37507 5.46090 5.53275 5.58192 5.62292 5.71938 5.76922 5.81622 5.87799 5.88716 6.01095 6.19186 6.24884 6.33011 6.43777 6.53222 6.69247 6.70946 6.82946 7.00342 7.24464 7.60235 7.73904 8.07105 8.38436 8.50858 9.29071 10.01850 10.20503 11.50973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.003775 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.679343 B = 7414.899347 C = 8501.052380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.134 4.134 5 C 0.144 3.856 6 H 0.100 0.900 7 C -0.161 4.161 8 N -0.712 5.712 9 C 0.506 3.494 10 O -0.526 6.526 11 C 0.078 3.922 12 N -0.556 5.556 13 C 0.526 3.474 14 O -0.459 6.459 15 C -0.149 4.149 16 C -0.096 4.096 17 C -0.132 4.132 18 C -0.134 4.134 19 C 0.542 3.458 20 O -0.482 6.482 21 N -0.745 5.745 22 C -0.238 4.238 23 H 0.088 0.912 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.359 0.641 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 7.966 17.203 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.040 3.960 6 H 0.118 0.882 7 C -0.219 4.219 8 N -0.363 5.363 9 C 0.290 3.710 10 O -0.402 6.402 11 C -0.048 4.048 12 N -0.299 5.299 13 C 0.314 3.686 14 O -0.328 6.328 15 C -0.189 4.189 16 C -0.099 4.099 17 C -0.189 4.189 18 C -0.192 4.192 19 C 0.330 3.670 20 O -0.353 6.353 21 N -0.388 5.388 22 C -0.368 4.368 23 H 0.106 0.894 24 C -0.189 4.189 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.192 0.808 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.634 7.501 16.797 21.766 hybrid contribution -0.264 -1.125 0.055 1.157 sum 11.369 6.376 16.852 21.305 Atomic orbital electron populations 1.22420 0.98950 1.00831 1.00339 1.20193 0.91794 0.95813 0.85491 0.92817 1.22222 0.93643 1.02202 0.99215 1.21023 0.95147 0.80181 0.99678 0.88241 1.22184 1.01627 1.00023 0.98103 1.45820 1.16143 1.11741 1.62624 1.20511 0.82501 0.89773 0.78232 1.90721 1.51113 1.56059 1.42276 1.21581 0.83927 0.96342 1.02903 1.46304 1.08028 1.62074 1.13472 1.20819 0.92410 0.74630 0.80738 1.90892 1.52486 1.45241 1.44203 1.22708 0.91422 1.06612 0.98159 1.21457 0.94611 0.99791 0.94065 1.21769 1.00041 0.94993 1.02146 1.21772 0.98844 0.94963 1.03587 1.20703 0.85416 0.74143 0.86717 1.90721 1.86452 1.43474 1.14636 1.42773 1.79582 1.09313 1.07176 1.19002 1.36862 0.95417 0.85499 0.89430 1.24631 1.01369 0.97282 0.95632 1.69698 1.52751 1.35410 1.00247 0.86591 0.77964 0.87150 0.77077 1.21277 1.21856 1.20365 0.92387 0.93642 0.94359 0.90692 0.91460 0.92491 0.92821 0.91815 0.76933 0.86243 0.85730 0.85800 0.86030 0.90977 0.90486 0.91897 0.91333 0.90537 0.91073 0.80819 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.49 37.15 0.35 -2.44 16 2 C 0.18 3.25 2.84 -67.94 -0.19 3.05 16 3 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.26 2.52 -67.93 -0.17 2.09 16 6 H 0.10 2.06 7.05 -51.93 -0.37 1.69 16 7 C -0.16 -2.16 9.48 37.16 0.35 -1.80 16 8 N -0.71 -10.17 4.45 -53.81 -0.24 -10.41 16 9 C 0.51 8.43 7.86 -10.99 -0.09 8.34 16 10 O -0.53 -11.09 16.09 5.56 0.09 -11.01 16 11 C 0.08 1.01 6.03 -5.19 -0.03 0.98 16 12 N -0.56 -7.60 2.04 -116.63 -0.24 -7.84 16 13 C 0.53 7.56 8.08 -11.08 -0.09 7.47 16 14 O -0.46 -8.70 17.48 5.61 0.10 -8.60 16 15 C -0.15 -1.39 6.32 -26.94 -0.17 -1.56 16 16 C -0.10 -0.87 1.05 -154.72 -0.16 -1.03 16 17 C -0.13 -0.82 8.44 37.16 0.31 -0.51 16 18 C -0.13 -1.13 8.45 37.15 0.31 -0.82 16 19 C 0.54 6.88 6.74 -11.09 -0.07 6.81 16 20 O -0.48 -7.15 17.48 5.61 0.10 -7.05 16 21 N -0.75 -17.68 4.30 -53.43 -0.23 -17.91 16 22 C -0.24 -6.88 10.41 -15.06 -0.16 -7.03 16 23 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -30.49 13.97 55.49 0.78 -29.72 16 26 Si 0.88 23.24 27.74 -169.99 -4.71 18.52 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 29 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 39 H 0.12 1.19 7.83 -51.93 -0.41 0.78 16 40 H 0.12 1.49 7.83 -51.93 -0.41 1.08 16 41 H 0.12 1.09 7.74 -51.93 -0.40 0.69 16 42 H 0.12 0.79 7.74 -51.93 -0.40 0.38 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.36 8.52 5.66 -40.82 -0.23 8.29 16 50 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 LS Contribution 412.15 15.07 6.21 6.21 Total: -1.00 -39.67 412.15 -6.63 -46.30 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -8.47 Total: 9.91 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -0.01 Total: 11.60 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: 0.07 Total: -65.88 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: 0.29 Total: -26.66 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -39.67 -6.63 -46.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134391702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.895 kcal (2) G-P(sol) polarization free energy of solvation -39.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds