Wall clock time and date at job start Tue Mar 31 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 H 1.08995 * 109.47139 * 304.99688 * 5 4 2 7 7 C 1.53005 * 109.46852 * 185.00062 * 5 4 2 8 8 N 1.46496 * 109.46991 * 65.00027 * 5 4 2 9 9 C 1.34776 * 119.99893 * 204.99554 * 8 5 4 10 10 O 1.21281 * 120.00297 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00194 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.47436 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47291 * 180.02562 * 12 11 9 14 14 N 1.46500 * 109.47051 * 179.97438 * 13 12 11 15 15 C 1.33877 * 122.76054 * 269.70964 * 14 13 12 16 16 O 1.21232 * 125.39704 * 359.97438 * 15 14 13 17 17 C 1.51314 * 109.20621 * 179.84649 * 15 14 13 18 18 C 1.54226 * 103.55526 * 0.38451 * 17 15 14 19 19 C 1.33866 * 122.76266 * 90.00210 * 14 13 12 20 20 O 1.21231 * 125.39906 * 359.97438 * 19 14 13 21 21 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 22 22 C 1.36940 * 120.00114 * 275.00271 * 21 2 1 23 23 H 1.07993 * 119.99751 * 359.97438 * 22 21 2 24 24 C 1.38813 * 120.00020 * 179.97438 * 22 21 2 25 25 N 1.31623 * 120.00145 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99789 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46987 * 90.00577 * 26 24 22 28 28 H 1.48502 * 109.47063 * 210.00262 * 26 24 22 29 29 H 1.48499 * 109.47321 * 330.00080 * 26 24 22 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 34 34 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 35 35 H 1.09004 * 109.46986 * 299.99593 * 7 5 4 36 36 H 1.08992 * 109.47402 * 59.99707 * 7 5 4 37 37 H 1.09000 * 109.46659 * 180.02562 * 7 5 4 38 38 H 0.97002 * 119.99990 * 25.00215 * 8 5 4 39 39 H 1.08996 * 109.47626 * 300.00982 * 11 9 8 40 40 H 1.09007 * 109.47016 * 60.00360 * 11 9 8 41 41 H 1.08996 * 109.46868 * 300.00288 * 12 11 9 42 42 H 1.08998 * 109.47124 * 60.00061 * 12 11 9 43 43 H 1.08996 * 109.47185 * 299.99832 * 13 12 11 44 44 H 1.09000 * 109.46728 * 60.00051 * 13 12 11 45 45 H 1.09006 * 110.79298 * 241.77767 * 17 15 14 46 46 H 1.08993 * 110.55498 * 118.87519 * 17 15 14 47 47 H 1.09006 * 110.60709 * 241.26801 * 18 17 15 48 48 H 1.08999 * 110.60682 * 118.29697 * 18 17 15 49 49 H 0.97005 * 120.00153 * 94.99794 * 21 2 1 50 50 H 0.96993 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4359 -1.2678 7 6 4.0645 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1825 9 6 5.3748 -0.9910 0.2732 10 8 5.9860 -0.0851 -0.2529 11 6 5.9804 -1.7322 1.4372 12 6 7.3595 -1.1490 1.7514 13 6 7.9746 -1.9019 2.9328 14 7 9.2954 -1.3439 3.2333 15 6 10.4209 -1.8045 2.6735 16 8 10.4864 -2.7128 1.8732 17 6 11.5979 -1.0097 3.1954 18 6 10.9517 -0.0057 4.1717 19 6 9.4768 -0.3352 4.0945 20 8 8.5986 0.2258 4.7140 21 7 2.0184 -0.6906 1.1961 22 6 2.1492 -0.0075 2.3757 23 1 1.8927 1.0404 2.4241 24 6 2.6115 -0.6620 3.5092 25 7 2.9246 -1.9391 3.4501 26 14 2.7905 0.2700 5.1181 27 1 1.5227 0.1797 5.8862 28 1 3.8947 -0.3238 5.9139 29 1 3.0964 1.6950 4.8334 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2056 34 1 1.6054 -0.2616 -2.1370 35 1 3.7723 -2.2739 -2.6701 36 1 3.6264 -0.6884 -3.4658 37 1 5.1509 -1.1482 -2.6699 38 1 3.6648 -2.0584 0.2385 39 1 5.3350 -1.6284 2.3094 40 1 6.0810 -2.7874 1.1832 41 1 8.0050 -1.2525 0.8793 42 1 7.2585 -0.0938 2.0055 43 1 7.3292 -1.7988 3.8051 44 1 8.0756 -2.9570 2.6783 45 1 12.1013 -0.4851 2.3832 46 1 12.2963 -1.6606 3.7212 47 1 11.1336 1.0182 3.8452 48 1 11.3266 -0.1592 5.1837 49 1 2.2491 -1.6318 1.1525 50 1 3.2479 -2.3963 4.2420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134541190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:28 Heat of formation + Delta-G solvation = -102.801556 kcal Electronic energy + Delta-G solvation = -30919.609175 eV Core-core repulsion = 26754.074674 eV Total energy + Delta-G solvation = -4165.534501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92385 -39.25997 -38.61844 -36.87161 -35.97970 -34.78891 -34.06867 -32.32911 -31.87447 -30.46608 -28.54396 -26.83709 -26.34854 -26.27538 -23.65170 -22.68281 -22.48050 -20.71695 -20.19242 -19.55306 -19.30984 -17.40394 -17.18074 -17.05705 -16.55400 -16.14325 -15.71929 -15.14700 -14.84789 -14.74307 -14.31413 -14.14128 -14.07757 -13.93982 -13.71190 -13.64920 -13.21304 -13.00517 -12.83512 -12.72566 -12.34285 -12.14115 -11.86632 -11.69581 -11.65642 -11.64436 -11.55467 -11.36953 -10.96511 -10.81679 -10.71007 -10.63678 -10.44091 -10.32758 -10.22369 -10.10571 -9.88156 -9.76685 -9.66534 -9.08660 -8.93955 -8.27712 -6.93765 -5.80365 -3.06021 1.40236 2.43812 2.61920 3.43281 3.45281 3.52674 3.54364 3.87647 3.92587 4.03416 4.19698 4.56246 4.60573 5.06537 5.08471 5.15871 5.17844 5.23850 5.29485 5.33827 5.44370 5.49736 5.52839 5.55935 5.68846 5.71302 5.78070 5.87059 5.94038 6.01744 6.04405 6.14672 6.18437 6.26744 6.39217 6.44387 6.48269 6.59062 6.61830 6.68803 6.79925 6.87492 7.07304 7.22244 7.27499 7.68741 7.71103 8.29128 8.39842 9.01665 9.51275 10.05154 10.41024 11.41951 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.003691 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.894609 B = 7584.315590 C = 9504.055850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.697 5.697 9 C 0.532 3.468 10 O -0.570 6.570 11 C -0.141 4.141 12 C -0.110 4.110 13 C 0.097 3.903 14 N -0.571 5.571 15 C 0.525 3.475 16 O -0.484 6.484 17 C -0.157 4.157 18 C -0.157 4.157 19 C 0.520 3.480 20 O -0.472 6.472 21 N -0.716 5.716 22 C -0.225 4.225 23 H 0.067 0.933 24 C -0.009 4.009 25 N -0.935 5.935 26 Si 0.897 3.103 27 H -0.293 1.293 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.405 0.595 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.378 0.622 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.160 -1.113 -4.252 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.099 0.901 7 C -0.220 4.220 8 N -0.349 5.349 9 C 0.319 3.681 10 O -0.450 6.450 11 C -0.181 4.181 12 C -0.149 4.149 13 C -0.024 4.024 14 N -0.314 5.314 15 C 0.314 3.686 16 O -0.355 6.355 17 C -0.197 4.197 18 C -0.197 4.197 19 C 0.309 3.691 20 O -0.342 6.342 21 N -0.359 5.359 22 C -0.357 4.357 23 H 0.085 0.915 24 C -0.205 4.205 25 N -0.584 5.584 26 Si 0.728 3.272 27 H -0.220 1.220 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.242 0.758 39 H 0.142 0.858 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.213 0.787 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.117 -0.548 -4.583 13.905 hybrid contribution -0.327 -0.161 1.231 1.283 sum 12.790 -0.710 -3.352 13.241 Atomic orbital electron populations 1.22425 0.99359 1.00696 0.99888 1.20278 0.91626 0.95717 0.86436 0.93500 1.22200 0.94124 1.01556 0.99299 1.20767 0.92430 0.97274 0.85111 0.90120 1.22202 1.01680 1.00757 0.97352 1.45955 1.17908 1.37585 1.33492 1.20311 0.81183 0.83188 0.83422 1.90599 1.62398 1.31666 1.60315 1.21565 0.96843 0.99780 0.99921 1.21538 0.95856 1.00645 0.96867 1.21925 0.81127 0.98759 1.00563 1.46791 1.10305 1.33684 1.40623 1.20804 0.85343 0.82801 0.79655 1.90778 1.85959 1.27946 1.30859 1.22466 0.97400 0.98611 1.01207 1.22479 0.91843 1.02431 1.02937 1.20851 0.92180 0.78436 0.77668 1.90847 1.49126 1.51099 1.43121 1.42451 1.77950 1.10161 1.05347 1.19208 1.35459 0.93765 0.87248 0.91542 1.24546 1.02449 0.95941 0.97520 1.69592 1.51810 1.08313 1.28727 0.86337 0.77179 0.79192 0.84453 1.22036 1.21634 1.20984 0.92897 0.94621 0.93617 0.91783 0.90965 0.92879 0.92287 0.92513 0.75761 0.85829 0.89711 0.91422 0.90832 0.88350 0.88833 0.86216 0.86342 0.86199 0.86293 0.78687 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.17 2.89 -67.93 -0.20 2.98 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16 5 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16 6 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 7 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 8 N -0.70 -12.62 3.80 -53.81 -0.20 -12.82 16 9 C 0.53 10.56 7.79 -10.99 -0.09 10.47 16 10 O -0.57 -12.75 15.64 5.56 0.09 -12.67 16 11 C -0.14 -2.51 5.70 -27.89 -0.16 -2.67 16 12 C -0.11 -1.86 4.83 -26.73 -0.13 -1.99 16 13 C 0.10 1.42 5.56 -4.04 -0.02 1.40 16 14 N -0.57 -7.37 2.55 -115.34 -0.29 -7.67 16 15 C 0.53 6.02 8.08 -11.09 -0.09 5.93 16 16 O -0.48 -7.13 17.47 5.60 0.10 -7.03 16 17 C -0.16 -0.97 7.03 -26.94 -0.19 -1.16 16 18 C -0.16 -1.04 7.03 -26.94 -0.19 -1.23 16 19 C 0.52 6.53 8.08 -11.09 -0.09 6.44 16 20 O -0.47 -8.08 17.48 5.60 0.10 -7.98 16 21 N -0.72 -16.09 3.84 -53.43 -0.21 -16.29 16 22 C -0.23 -5.87 9.93 -15.06 -0.15 -6.02 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -24.83 12.78 55.49 0.71 -24.12 16 26 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.40 7.38 6.51 -40.82 -0.27 7.11 16 39 H 0.12 2.55 7.86 -51.93 -0.41 2.14 16 40 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 41 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 43 H 0.10 1.55 7.83 -51.93 -0.41 1.14 16 44 H 0.09 1.26 7.82 -51.93 -0.41 0.86 16 45 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.38 8.65 5.70 -40.82 -0.23 8.42 16 50 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 412.40 15.07 6.21 6.21 Total: -1.00 -33.04 412.40 -7.92 -40.96 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -8.42 Total: 14.63 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.98 Total: 9.57 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.00 Total: -60.90 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: 0.28 Total: -27.68 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.04 -7.92 -40.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134541190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.843 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds