Wall clock time and date at job start Tue Mar 31 2020 22:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.47049 * 174.99763 * 4 2 1 6 6 H 1.08995 * 109.47139 * 304.99688 * 5 4 2 7 7 C 1.53005 * 109.46852 * 185.00062 * 5 4 2 8 8 N 1.46496 * 109.46991 * 65.00027 * 5 4 2 9 9 C 1.34776 * 119.99893 * 204.99554 * 8 5 4 10 10 O 1.21281 * 120.00297 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00194 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.47436 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47291 * 180.02562 * 12 11 9 14 14 N 1.46500 * 109.47051 * 179.97438 * 13 12 11 15 15 C 1.33877 * 122.76054 * 269.70964 * 14 13 12 16 16 O 1.21232 * 125.39704 * 359.97438 * 15 14 13 17 17 C 1.51314 * 109.20621 * 179.84649 * 15 14 13 18 18 C 1.54226 * 103.55526 * 0.38451 * 17 15 14 19 19 C 1.33866 * 122.76266 * 90.00210 * 14 13 12 20 20 O 1.21231 * 125.39906 * 359.97438 * 19 14 13 21 21 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 22 22 C 1.36940 * 120.00114 * 275.00271 * 21 2 1 23 23 H 1.07993 * 119.99751 * 359.97438 * 22 21 2 24 24 C 1.38813 * 120.00020 * 179.97438 * 22 21 2 25 25 N 1.31623 * 120.00145 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99789 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46987 * 90.00577 * 26 24 22 28 28 H 1.48502 * 109.47063 * 210.00262 * 26 24 22 29 29 H 1.48499 * 109.47321 * 330.00080 * 26 24 22 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 34 34 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 35 35 H 1.09004 * 109.46986 * 299.99593 * 7 5 4 36 36 H 1.08992 * 109.47402 * 59.99707 * 7 5 4 37 37 H 1.09000 * 109.46659 * 180.02562 * 7 5 4 38 38 H 0.97002 * 119.99990 * 25.00215 * 8 5 4 39 39 H 1.08996 * 109.47626 * 300.00982 * 11 9 8 40 40 H 1.09007 * 109.47016 * 60.00360 * 11 9 8 41 41 H 1.08996 * 109.46868 * 300.00288 * 12 11 9 42 42 H 1.08998 * 109.47124 * 60.00061 * 12 11 9 43 43 H 1.08996 * 109.47185 * 299.99832 * 13 12 11 44 44 H 1.09000 * 109.46728 * 60.00051 * 13 12 11 45 45 H 1.09006 * 110.79298 * 241.77767 * 17 15 14 46 46 H 1.08993 * 110.55498 * 118.87519 * 17 15 14 47 47 H 1.09006 * 110.60709 * 241.26801 * 18 17 15 48 48 H 1.08999 * 110.60682 * 118.29697 * 18 17 15 49 49 H 0.97005 * 120.00153 * 94.99794 * 21 2 1 50 50 H 0.96993 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.8571 0.4359 -1.2678 7 6 4.0645 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1825 9 6 5.3748 -0.9910 0.2732 10 8 5.9860 -0.0851 -0.2529 11 6 5.9804 -1.7322 1.4372 12 6 7.3595 -1.1490 1.7514 13 6 7.9746 -1.9019 2.9328 14 7 9.2954 -1.3439 3.2333 15 6 10.4209 -1.8045 2.6735 16 8 10.4864 -2.7128 1.8732 17 6 11.5979 -1.0097 3.1954 18 6 10.9517 -0.0057 4.1717 19 6 9.4768 -0.3352 4.0945 20 8 8.5986 0.2258 4.7140 21 7 2.0184 -0.6906 1.1961 22 6 2.1492 -0.0075 2.3757 23 1 1.8927 1.0404 2.4241 24 6 2.6115 -0.6620 3.5092 25 7 2.9246 -1.9391 3.4501 26 14 2.7905 0.2700 5.1181 27 1 1.5227 0.1797 5.8862 28 1 3.8947 -0.3238 5.9139 29 1 3.0964 1.6950 4.8334 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2056 34 1 1.6054 -0.2616 -2.1370 35 1 3.7723 -2.2739 -2.6701 36 1 3.6264 -0.6884 -3.4658 37 1 5.1509 -1.1482 -2.6699 38 1 3.6648 -2.0584 0.2385 39 1 5.3350 -1.6284 2.3094 40 1 6.0810 -2.7874 1.1832 41 1 8.0050 -1.2525 0.8793 42 1 7.2585 -0.0938 2.0055 43 1 7.3292 -1.7988 3.8051 44 1 8.0756 -2.9570 2.6783 45 1 12.1013 -0.4851 2.3832 46 1 12.2963 -1.6606 3.7212 47 1 11.1336 1.0182 3.8452 48 1 11.3266 -0.1592 5.1837 49 1 2.2491 -1.6318 1.1525 50 1 3.2479 -2.3963 4.2420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134541190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:28 Heat of formation + Delta-G solvation = -124.635715 kcal Electronic energy + Delta-G solvation = -30920.555976 eV Core-core repulsion = 26754.074674 eV Total energy + Delta-G solvation = -4166.481301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86951 -40.80640 -39.67004 -38.41134 -37.09166 -36.02569 -35.58999 -34.05518 -33.08222 -31.91758 -30.25145 -28.07795 -27.57571 -27.11681 -25.58954 -24.00364 -23.30446 -22.12741 -21.69238 -20.93560 -20.48539 -19.12611 -18.50044 -18.02640 -17.55430 -17.52149 -17.14632 -16.65569 -16.60249 -15.82444 -15.62913 -15.46729 -15.31909 -15.16996 -14.95582 -14.87905 -14.60420 -14.30356 -14.21131 -13.77939 -13.59435 -13.47017 -13.33496 -13.21520 -12.96187 -12.90237 -12.80563 -12.76998 -12.60097 -12.30381 -12.18085 -12.11909 -11.91050 -11.72782 -11.64802 -11.61782 -11.41567 -11.10358 -10.94956 -10.88902 -10.66926 -9.81310 -8.83331 -7.88209 -5.09495 0.47199 1.41021 1.47496 1.48759 1.49141 1.70769 1.83576 2.49729 2.57783 3.20345 3.25708 3.45609 3.63188 3.69889 3.79203 3.85423 3.91184 4.02337 4.16542 4.17451 4.27772 4.31844 4.36068 4.40625 4.56098 4.59348 4.68205 4.72096 4.75387 4.82544 4.86591 4.89308 4.91545 4.92155 5.00772 5.07573 5.12898 5.15175 5.16395 5.35990 5.41534 5.58802 5.62740 5.81938 5.82734 6.31667 6.35498 6.71520 6.75605 7.44326 7.45612 8.16862 8.44445 9.32948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.003691 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.894609 B = 7584.315590 C = 9504.055850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.144 3.856 6 H 0.052 0.948 7 C -0.150 4.150 8 N -0.691 5.691 9 C 0.522 3.478 10 O -0.601 6.601 11 C -0.133 4.133 12 C -0.095 4.095 13 C 0.100 3.900 14 N -0.581 5.581 15 C 0.518 3.482 16 O -0.521 6.521 17 C -0.138 4.138 18 C -0.139 4.139 19 C 0.510 3.490 20 O -0.531 6.531 21 N -0.719 5.719 22 C -0.226 4.226 23 H 0.054 0.946 24 C -0.046 4.046 25 N -0.941 5.941 26 Si 0.934 3.066 27 H -0.290 1.290 28 H -0.299 1.299 29 H -0.291 1.291 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.405 0.595 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.143 0.857 48 H 0.150 0.850 49 H 0.376 0.624 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.348 -1.567 -5.505 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.044 0.956 4 C -0.157 4.157 5 C 0.040 3.960 6 H 0.070 0.930 7 C -0.208 4.208 8 N -0.342 5.342 9 C 0.310 3.690 10 O -0.484 6.484 11 C -0.174 4.174 12 C -0.134 4.134 13 C -0.022 4.022 14 N -0.323 5.323 15 C 0.310 3.690 16 O -0.396 6.396 17 C -0.176 4.176 18 C -0.178 4.178 19 C 0.302 3.698 20 O -0.405 6.405 21 N -0.362 5.362 22 C -0.359 4.359 23 H 0.072 0.928 24 C -0.240 4.240 25 N -0.591 5.591 26 Si 0.767 3.233 27 H -0.218 1.218 28 H -0.226 1.226 29 H -0.218 1.218 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.243 0.757 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.164 0.836 46 H 0.171 0.829 47 H 0.161 0.839 48 H 0.168 0.832 49 H 0.211 0.789 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.294 -1.000 -5.865 15.482 hybrid contribution -0.744 0.021 1.561 1.730 sum 13.549 -0.979 -4.304 14.250 Atomic orbital electron populations 1.22272 0.97605 1.01072 1.00399 1.20492 0.92771 0.94810 0.86623 0.95559 1.22117 0.92842 1.02148 0.98613 1.20925 0.93437 0.95798 0.85849 0.92990 1.22092 1.00478 1.01897 0.96376 1.46013 1.17207 1.37270 1.33703 1.20648 0.81695 0.82972 0.83699 1.90572 1.63310 1.32995 1.61478 1.21496 0.96602 1.01196 0.98065 1.21345 0.95533 0.98931 0.97569 1.21685 0.82508 0.99199 0.98758 1.47053 1.10023 1.34092 1.41099 1.21827 0.86173 0.82382 0.78602 1.90757 1.86479 1.29781 1.32548 1.22606 0.95220 0.98018 1.01799 1.22619 0.86469 1.03703 1.05016 1.22023 0.94529 0.77166 0.76091 1.90814 1.51500 1.52867 1.45324 1.42494 1.78135 1.10014 1.05542 1.19286 1.34515 0.93385 0.88665 0.92811 1.24895 1.03468 0.96638 0.98958 1.69636 1.52438 1.08477 1.28596 0.85747 0.76659 0.78002 0.82915 1.21762 1.22602 1.21782 0.95279 0.91245 0.93227 0.90417 0.87428 0.91229 0.89669 0.94413 0.75712 0.88525 0.87151 0.91646 0.93955 0.90174 0.87680 0.83561 0.82920 0.83914 0.83194 0.78906 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 2 C 0.16 5.91 2.89 44.99 0.13 6.04 16 3 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 4 C -0.12 -3.33 4.43 30.59 0.14 -3.20 16 5 C 0.14 4.63 2.57 44.99 0.12 4.74 16 6 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 7 C -0.15 -3.86 9.48 71.98 0.68 -3.18 16 8 N -0.69 -25.20 3.80 -442.54 -1.68 -26.88 16 9 C 0.52 21.47 7.79 87.66 0.68 22.15 16 10 O -0.60 -28.02 15.64 -3.03 -0.05 -28.06 16 11 C -0.13 -4.99 5.70 29.85 0.17 -4.82 16 12 C -0.09 -3.40 4.83 30.59 0.15 -3.25 16 13 C 0.10 3.11 5.56 86.38 0.48 3.59 16 14 N -0.58 -15.18 2.55 -756.66 -1.93 -17.11 16 15 C 0.52 11.27 8.08 87.99 0.71 11.98 16 16 O -0.52 -15.08 17.47 -2.88 -0.05 -15.13 16 17 C -0.14 -1.16 7.03 30.46 0.21 -0.95 16 18 C -0.14 -1.40 7.03 30.46 0.21 -1.18 16 19 C 0.51 12.80 8.08 88.00 0.71 13.51 16 20 O -0.53 -19.08 17.48 -2.88 -0.05 -19.13 16 21 N -0.72 -32.48 3.84 -322.95 -1.24 -33.72 16 22 C -0.23 -12.03 9.93 84.03 0.83 -11.19 16 23 H 0.05 2.96 7.83 -2.91 -0.02 2.93 16 24 C -0.05 -2.48 5.50 84.86 0.47 -2.01 16 25 N -0.94 -50.96 12.78 21.65 0.28 -50.68 16 26 Si 0.93 46.94 29.55 68.60 2.03 48.97 16 27 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 28 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 29 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.41 14.75 6.51 -92.71 -0.60 14.15 16 39 H 0.10 4.23 7.86 -2.39 -0.02 4.21 16 40 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 41 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 42 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 43 H 0.08 2.76 7.83 -2.39 -0.02 2.74 16 44 H 0.10 2.96 7.82 -2.39 -0.02 2.94 16 45 H 0.15 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.38 17.21 5.70 -92.70 -0.53 16.68 16 50 H 0.25 13.48 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -77.29 412.40 3.49 -73.80 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.19 Total: 40.06 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 6.38 Total: 27.90 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -4.58 Total: -128.40 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: -0.15 Total: -62.33 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -77.29 3.49 -73.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134541190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.835 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds