Wall clock time and date at job start Tue Mar 31 2020 22:55:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08990 * 109.47173 * 2 1
4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3
5 5 C 1.53001 * 109.47001 * 175.00155 * 4 2 1
6 6 H 1.09008 * 109.46872 * 305.00174 * 5 4 2
7 7 C 1.53000 * 109.47211 * 185.00625 * 5 4 2
8 8 N 1.46498 * 109.47142 * 65.00197 * 5 4 2
9 9 C 1.36936 * 119.99921 * 204.99783 * 8 5 4
10 10 H 1.07999 * 119.99957 * 0.02562 * 9 8 5
11 11 C 1.38817 * 120.00105 * 179.97438 * 9 8 5
12 12 N 1.31621 * 119.99514 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 119.99979 * 180.02562 * 11 9 8
14 14 H 1.48494 * 109.47423 * 0.02562 * 13 11 9
15 15 H 1.48500 * 109.46805 * 120.00401 * 13 11 9
16 16 H 1.48500 * 109.46787 * 240.00197 * 13 11 9
17 17 N 1.46499 * 109.46843 * 120.00201 * 2 1 3
18 18 C 1.34784 * 119.99893 * 274.99901 * 17 2 1
19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 2
20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 2
21 21 C 1.53003 * 109.46624 * 180.02562 * 20 18 17
22 22 C 1.53003 * 109.46813 * 179.97438 * 21 20 18
23 23 N 1.46498 * 109.47130 * 179.97438 * 22 21 20
24 24 C 1.33881 * 122.76528 * 269.71386 * 23 22 21
25 25 O 1.21230 * 125.39331 * 359.96999 * 24 23 22
26 26 C 1.51317 * 109.20731 * 179.84075 * 24 23 22
27 27 C 1.54224 * 103.55587 * 0.38644 * 26 24 23
28 28 C 1.33883 * 122.76336 * 89.99845 * 23 22 21
29 29 O 1.21222 * 125.38975 * 359.97438 * 28 23 22
30 30 H 1.08997 * 109.47450 * 300.00199 * 1 2 3
31 31 H 1.08998 * 109.47317 * 60.00174 * 1 2 3
32 32 H 1.09007 * 109.47248 * 179.97438 * 1 2 3
33 33 H 1.08991 * 109.47642 * 295.00208 * 4 2 1
34 34 H 1.09005 * 109.47281 * 55.00277 * 4 2 1
35 35 H 1.09001 * 109.47276 * 59.99610 * 7 5 4
36 36 H 1.09004 * 109.47144 * 180.02562 * 7 5 4
37 37 H 1.09002 * 109.46939 * 299.99959 * 7 5 4
38 38 H 0.96998 * 120.00103 * 25.00024 * 8 5 4
39 39 H 0.97003 * 119.99719 * 180.02562 * 12 11 9
40 40 H 0.97005 * 120.00261 * 95.00113 * 17 2 1
41 41 H 1.09001 * 109.46809 * 299.99238 * 20 18 17
42 42 H 1.08993 * 109.47525 * 59.99679 * 20 18 17
43 43 H 1.09001 * 109.46782 * 299.99104 * 21 20 18
44 44 H 1.08993 * 109.47555 * 59.99547 * 21 20 18
45 45 H 1.08998 * 109.47446 * 299.99771 * 22 21 20
46 46 H 1.09001 * 109.47095 * 59.99865 * 22 21 20
47 47 H 1.08995 * 110.79383 * 241.77478 * 26 24 23
48 48 H 1.09000 * 110.54442 * 118.87480 * 26 24 23
49 49 H 1.08999 * 110.60323 * 241.26128 * 27 26 24
50 50 H 1.08995 * 110.61148 * 118.29311 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5648 -0.6134 -1.3136
6 1 3.8570 0.4358 -1.2677
7 6 4.0645 -1.2250 -2.6240
8 7 4.1536 -1.3343 -0.1823
9 6 5.3943 -0.9857 0.2807
10 1 5.9385 -0.1791 -0.1879
11 6 5.9520 -1.6684 1.3530
12 7 5.2885 -2.6511 1.9243
13 14 7.6442 -1.1924 1.9850
14 1 8.1750 -0.0648 1.1777
15 1 7.5426 -0.7775 3.4073
16 1 8.5597 -2.3562 1.8730
17 7 2.0182 -0.6907 1.1962
18 6 2.1469 -0.0183 2.3572
19 8 1.8581 1.1584 2.4117
20 6 2.6434 -0.7302 3.5891
21 6 2.6955 0.2531 4.7602
22 6 3.1989 -0.4699 6.0111
23 7 3.2494 0.4718 7.1323
24 6 4.3355 1.2004 7.4181
25 8 5.3809 1.1730 6.8048
26 6 4.0505 2.0660 8.6262
27 6 2.5994 1.7000 8.9988
28 6 2.2150 0.6704 7.9587
29 8 1.1406 0.1139 7.8850
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 1.7516 -1.7715 -1.2056
34 1 1.6054 -0.2618 -2.1370
35 1 3.6264 -0.6887 -3.4657
36 1 5.1509 -1.1486 -2.6696
37 1 3.7722 -2.2741 -2.6699
38 1 3.6647 -2.0585 0.2387
39 1 5.6780 -3.1279 2.6739
40 1 2.2490 -1.6319 1.1526
41 1 1.9668 -1.5493 3.8328
42 1 3.6414 -1.1266 3.4024
43 1 3.3719 1.0725 4.5167
44 1 1.6973 0.6491 4.9468
45 1 2.5224 -1.2891 6.2544
46 1 4.1971 -0.8662 5.8247
47 1 4.1263 3.1230 8.3714
48 1 4.7299 1.8196 9.4421
49 1 1.9532 2.5751 8.9293
50 1 2.5571 1.2691 9.9990
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001134541193.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:55:31
Heat of formation + Delta-G solvation = -102.859632 kcal
Electronic energy + Delta-G solvation = -30918.846822 eV
Core-core repulsion = 26753.309803 eV
Total energy + Delta-G solvation = -4165.537019 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.92056 -39.25970 -38.61733 -36.87234 -35.97772 -34.78752 -34.06924 -32.32886
-31.87418 -30.46588 -28.54487 -26.83640 -26.34656 -26.27563 -23.65351 -22.68206
-22.47730 -20.71701 -20.19318 -19.55161 -19.31006 -17.40152 -17.18128 -17.05522
-16.55125 -16.14326 -15.72031 -15.14478 -14.84931 -14.74234 -14.31244 -14.14005
-14.07632 -13.93967 -13.70665 -13.65145 -13.21113 -13.00519 -12.83505 -12.72870
-12.34269 -12.14085 -11.86588 -11.69597 -11.65558 -11.64469 -11.55401 -11.36963
-10.97062 -10.81439 -10.71734 -10.63513 -10.43991 -10.33137 -10.20021 -10.10299
-9.87198 -9.76424 -9.67103 -9.08713 -8.94378 -8.27766 -6.93746 -5.80641
-3.06194 1.40543 2.44022 2.62178 3.43578 3.45402 3.52639 3.55072
3.87814 3.92360 4.03565 4.19885 4.56401 4.60540 5.06692 5.08505
5.15963 5.17896 5.24032 5.29640 5.34008 5.44289 5.49881 5.52908
5.55878 5.68876 5.71208 5.78116 5.87085 5.94054 6.01751 6.04338
6.14694 6.18411 6.26653 6.39195 6.44376 6.48314 6.59006 6.61752
6.68750 6.80135 6.87408 7.07256 7.22562 7.27446 7.69030 7.71499
8.29036 8.39602 9.01602 9.51142 10.05042 10.40929 11.41761
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.010902 B = 0.003690 C = 0.002943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2567.616230 B = 7585.736833 C = 9511.198254
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.149 3.851
3 H 0.081 0.919
4 C -0.133 4.133
5 C 0.169 3.831
6 H 0.047 0.953
7 C -0.163 4.163
8 N -0.716 5.716
9 C -0.225 4.225
10 H 0.067 0.933
11 C -0.010 4.010
12 N -0.934 5.934
13 Si 0.895 3.105
14 H -0.283 1.283
15 H -0.288 1.288
16 H -0.294 1.294
17 N -0.697 5.697
18 C 0.532 3.468
19 O -0.570 6.570
20 C -0.141 4.141
21 C -0.110 4.110
22 C 0.097 3.903
23 N -0.571 5.571
24 C 0.520 3.480
25 O -0.471 6.471
26 C -0.157 4.157
27 C -0.157 4.157
28 C 0.525 3.475
29 O -0.484 6.484
30 H 0.056 0.944
31 H 0.058 0.942
32 H 0.052 0.948
33 H 0.063 0.937
34 H 0.072 0.928
35 H 0.035 0.965
36 H 0.052 0.948
37 H 0.045 0.955
38 H 0.378 0.622
39 H 0.253 0.747
40 H 0.405 0.595
41 H 0.085 0.915
42 H 0.124 0.876
43 H 0.073 0.927
44 H 0.067 0.933
45 H 0.093 0.907
46 H 0.098 0.902
47 H 0.120 0.880
48 H 0.119 0.881
49 H 0.119 0.881
50 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.397 5.391 9.637 13.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.044 3.956
3 H 0.099 0.901
4 C -0.172 4.172
5 C 0.059 3.941
6 H 0.065 0.935
7 C -0.224 4.224
8 N -0.359 5.359
9 C -0.356 4.356
10 H 0.085 0.915
11 C -0.205 4.205
12 N -0.584 5.584
13 Si 0.727 3.273
14 H -0.209 1.209
15 H -0.215 1.215
16 H -0.221 1.221
17 N -0.349 5.349
18 C 0.319 3.681
19 O -0.450 6.450
20 C -0.181 4.181
21 C -0.149 4.149
22 C -0.024 4.024
23 N -0.314 5.314
24 C 0.309 3.691
25 O -0.342 6.342
26 C -0.197 4.197
27 C -0.197 4.197
28 C 0.314 3.686
29 O -0.355 6.355
30 H 0.075 0.925
31 H 0.077 0.923
32 H 0.071 0.929
33 H 0.082 0.918
34 H 0.090 0.910
35 H 0.054 0.946
36 H 0.071 0.929
37 H 0.064 0.936
38 H 0.213 0.787
39 H 0.063 0.937
40 H 0.242 0.758
41 H 0.103 0.897
42 H 0.142 0.858
43 H 0.091 0.909
44 H 0.086 0.914
45 H 0.112 0.888
46 H 0.116 0.884
47 H 0.138 0.862
48 H 0.137 0.863
49 H 0.138 0.862
50 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -8.437 5.956 9.294 13.894
hybrid contribution 1.092 -0.593 0.320 1.283
sum -7.345 5.363 9.615 13.234
Atomic orbital electron populations
1.22201 0.96478 1.01517 1.01794 1.20765 0.92343 0.97679 0.84792
0.90121 1.22200 0.97761 1.00581 0.96641 1.20280 0.89742 0.95842
0.88195 0.93502 1.22424 1.01507 1.00339 0.98095 1.42457 1.18673
1.39977 1.34818 1.19254 0.93201 1.12873 1.10298 0.91490 1.24549
0.98325 0.98652 0.98958 1.69606 1.37912 1.24750 1.26160 0.86290
0.84710 0.77395 0.78943 1.20851 1.21536 1.22117 1.45960 1.65922
1.14386 1.08681 1.20312 0.76083 0.86842 0.84852 1.90599 1.52013
1.16476 1.85892 1.21564 1.05802 0.98507 0.92234 1.21537 1.02193
0.98729 0.92439 1.21923 1.04528 0.91295 0.84617 1.46797 1.15474
1.39837 1.29308 1.20850 0.82666 0.79998 0.85629 1.90851 1.25553
1.64007 1.53741 1.22471 0.97327 1.02356 0.97539 1.22469 0.97056
1.00021 1.00123 1.20809 0.83061 0.82506 0.82241 1.90775 1.22384
1.50115 1.72267 0.92508 0.92295 0.92876 0.91782 0.90964 0.94614
0.92896 0.93618 0.78691 0.93720 0.75761 0.89707 0.85842 0.90851
0.91409 0.88842 0.88352 0.86186 0.86320 0.86236 0.86318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16
2 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16
3 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16
4 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16
5 C 0.17 3.17 2.89 -67.93 -0.20 2.98 16
6 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16
7 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16
8 N -0.72 -16.09 3.84 -53.42 -0.21 -16.30 16
9 C -0.22 -5.86 9.93 -15.06 -0.15 -6.01 16
10 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16
11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16
12 N -0.93 -24.85 12.79 55.49 0.71 -24.14 16
13 Si 0.89 22.19 29.55 -169.99 -5.02 17.16 16
14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
15 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16
16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
17 N -0.70 -12.62 3.80 -53.81 -0.20 -12.82 16
18 C 0.53 10.57 7.79 -10.98 -0.09 10.48 16
19 O -0.57 -12.75 15.65 5.56 0.09 -12.67 16
20 C -0.14 -2.52 5.70 -27.88 -0.16 -2.68 16
21 C -0.11 -1.86 4.83 -26.73 -0.13 -1.99 16
22 C 0.10 1.42 5.56 -4.04 -0.02 1.40 16
23 N -0.57 -7.40 2.55 -115.34 -0.29 -7.69 16
24 C 0.52 6.56 8.08 -11.08 -0.09 6.47 16
25 O -0.47 -8.13 17.47 5.60 0.10 -8.03 16
26 C -0.16 -1.05 7.03 -26.94 -0.19 -1.24 16
27 C -0.16 -0.97 7.03 -26.94 -0.19 -1.16 16
28 C 0.53 6.03 8.08 -11.08 -0.09 5.95 16
29 O -0.48 -7.14 17.48 5.61 0.10 -7.04 16
30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16
33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
38 H 0.38 8.65 5.70 -40.82 -0.23 8.42 16
39 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16
40 H 0.40 7.38 6.51 -40.82 -0.27 7.11 16
41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
42 H 0.12 2.55 7.87 -51.93 -0.41 2.15 16
43 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16
44 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16
45 H 0.09 1.26 7.83 -51.93 -0.41 0.86 16
46 H 0.10 1.56 7.82 -51.93 -0.41 1.15 16
47 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16
48 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16
49 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16
50 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16
LS Contribution 412.42 15.07 6.22 6.22
Total: -1.00 -33.11 412.42 -7.92 -41.03
By element:
Atomic # 1 Polarization: 23.07 SS G_CDS: -8.42 Total: 14.66 kcal
Atomic # 6 Polarization: 10.60 SS G_CDS: -0.98 Total: 9.62 kcal
Atomic # 7 Polarization: -60.95 SS G_CDS: 0.01 Total: -60.95 kcal
Atomic # 8 Polarization: -28.02 SS G_CDS: 0.28 Total: -27.74 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 6.22 Total: 6.22 kcal
Total: -33.11 -7.92 -41.03 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134541193.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.829 kcal
(2) G-P(sol) polarization free energy of solvation -33.110 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds