Wall clock time and date at job start Tue Mar 31 2020 22:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 C 1.53001 * 109.47001 * 175.00155 * 4 2 1 6 6 H 1.09008 * 109.46872 * 305.00174 * 5 4 2 7 7 C 1.53000 * 109.47211 * 185.00625 * 5 4 2 8 8 N 1.46498 * 109.47142 * 65.00197 * 5 4 2 9 9 C 1.36936 * 119.99921 * 204.99783 * 8 5 4 10 10 H 1.07999 * 119.99957 * 0.02562 * 9 8 5 11 11 C 1.38817 * 120.00105 * 179.97438 * 9 8 5 12 12 N 1.31621 * 119.99514 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47423 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46805 * 120.00401 * 13 11 9 16 16 H 1.48500 * 109.46787 * 240.00197 * 13 11 9 17 17 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 18 18 C 1.34784 * 119.99893 * 274.99901 * 17 2 1 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 2 21 21 C 1.53003 * 109.46624 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46813 * 179.97438 * 21 20 18 23 23 N 1.46498 * 109.47130 * 179.97438 * 22 21 20 24 24 C 1.33881 * 122.76528 * 269.71386 * 23 22 21 25 25 O 1.21230 * 125.39331 * 359.96999 * 24 23 22 26 26 C 1.51317 * 109.20731 * 179.84075 * 24 23 22 27 27 C 1.54224 * 103.55587 * 0.38644 * 26 24 23 28 28 C 1.33883 * 122.76336 * 89.99845 * 23 22 21 29 29 O 1.21222 * 125.38975 * 359.97438 * 28 23 22 30 30 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 32 32 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47642 * 295.00208 * 4 2 1 34 34 H 1.09005 * 109.47281 * 55.00277 * 4 2 1 35 35 H 1.09001 * 109.47276 * 59.99610 * 7 5 4 36 36 H 1.09004 * 109.47144 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.46939 * 299.99959 * 7 5 4 38 38 H 0.96998 * 120.00103 * 25.00024 * 8 5 4 39 39 H 0.97003 * 119.99719 * 180.02562 * 12 11 9 40 40 H 0.97005 * 120.00261 * 95.00113 * 17 2 1 41 41 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 42 42 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 43 43 H 1.09001 * 109.46782 * 299.99104 * 21 20 18 44 44 H 1.08993 * 109.47555 * 59.99547 * 21 20 18 45 45 H 1.08998 * 109.47446 * 299.99771 * 22 21 20 46 46 H 1.09001 * 109.47095 * 59.99865 * 22 21 20 47 47 H 1.08995 * 110.79383 * 241.77478 * 26 24 23 48 48 H 1.09000 * 110.54442 * 118.87480 * 26 24 23 49 49 H 1.08999 * 110.60323 * 241.26128 * 27 26 24 50 50 H 1.08995 * 110.61148 * 118.29311 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2250 -2.6240 8 7 4.1536 -1.3343 -0.1823 9 6 5.3943 -0.9857 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9520 -1.6684 1.3530 12 7 5.2885 -2.6511 1.9243 13 14 7.6442 -1.1924 1.9850 14 1 8.1750 -0.0648 1.1777 15 1 7.5426 -0.7775 3.4073 16 1 8.5597 -2.3562 1.8730 17 7 2.0182 -0.6907 1.1962 18 6 2.1469 -0.0183 2.3572 19 8 1.8581 1.1584 2.4117 20 6 2.6434 -0.7302 3.5891 21 6 2.6955 0.2531 4.7602 22 6 3.1989 -0.4699 6.0111 23 7 3.2494 0.4718 7.1323 24 6 4.3355 1.2004 7.4181 25 8 5.3809 1.1730 6.8048 26 6 4.0505 2.0660 8.6262 27 6 2.5994 1.7000 8.9988 28 6 2.2150 0.6704 7.9587 29 8 1.1406 0.1139 7.8850 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2618 -2.1370 35 1 3.6264 -0.6887 -3.4657 36 1 5.1509 -1.1486 -2.6696 37 1 3.7722 -2.2741 -2.6699 38 1 3.6647 -2.0585 0.2387 39 1 5.6780 -3.1279 2.6739 40 1 2.2490 -1.6319 1.1526 41 1 1.9668 -1.5493 3.8328 42 1 3.6414 -1.1266 3.4024 43 1 3.3719 1.0725 4.5167 44 1 1.6973 0.6491 4.9468 45 1 2.5224 -1.2891 6.2544 46 1 4.1971 -0.8662 5.8247 47 1 4.1263 3.1230 8.3714 48 1 4.7299 1.8196 9.4421 49 1 1.9532 2.5751 8.9293 50 1 2.5571 1.2691 9.9990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134541193.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:31 Heat of formation + Delta-G solvation = -102.859632 kcal Electronic energy + Delta-G solvation = -30918.846822 eV Core-core repulsion = 26753.309803 eV Total energy + Delta-G solvation = -4165.537019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.92056 -39.25970 -38.61733 -36.87234 -35.97772 -34.78752 -34.06924 -32.32886 -31.87418 -30.46588 -28.54487 -26.83640 -26.34656 -26.27563 -23.65351 -22.68206 -22.47730 -20.71701 -20.19318 -19.55161 -19.31006 -17.40152 -17.18128 -17.05522 -16.55125 -16.14326 -15.72031 -15.14478 -14.84931 -14.74234 -14.31244 -14.14005 -14.07632 -13.93967 -13.70665 -13.65145 -13.21113 -13.00519 -12.83505 -12.72870 -12.34269 -12.14085 -11.86588 -11.69597 -11.65558 -11.64469 -11.55401 -11.36963 -10.97062 -10.81439 -10.71734 -10.63513 -10.43991 -10.33137 -10.20021 -10.10299 -9.87198 -9.76424 -9.67103 -9.08713 -8.94378 -8.27766 -6.93746 -5.80641 -3.06194 1.40543 2.44022 2.62178 3.43578 3.45402 3.52639 3.55072 3.87814 3.92360 4.03565 4.19885 4.56401 4.60540 5.06692 5.08505 5.15963 5.17896 5.24032 5.29640 5.34008 5.44289 5.49881 5.52908 5.55878 5.68876 5.71208 5.78116 5.87085 5.94054 6.01751 6.04338 6.14694 6.18411 6.26653 6.39195 6.44376 6.48314 6.59006 6.61752 6.68750 6.80135 6.87408 7.07256 7.22562 7.27446 7.69030 7.71499 8.29036 8.39602 9.01602 9.51142 10.05042 10.40929 11.41761 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.003690 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.616230 B = 7585.736833 C = 9511.198254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.225 4.225 10 H 0.067 0.933 11 C -0.010 4.010 12 N -0.934 5.934 13 Si 0.895 3.105 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.294 1.294 17 N -0.697 5.697 18 C 0.532 3.468 19 O -0.570 6.570 20 C -0.141 4.141 21 C -0.110 4.110 22 C 0.097 3.903 23 N -0.571 5.571 24 C 0.520 3.480 25 O -0.471 6.471 26 C -0.157 4.157 27 C -0.157 4.157 28 C 0.525 3.475 29 O -0.484 6.484 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.378 0.622 39 H 0.253 0.747 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 5.391 9.637 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.356 4.356 10 H 0.085 0.915 11 C -0.205 4.205 12 N -0.584 5.584 13 Si 0.727 3.273 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.221 1.221 17 N -0.349 5.349 18 C 0.319 3.681 19 O -0.450 6.450 20 C -0.181 4.181 21 C -0.149 4.149 22 C -0.024 4.024 23 N -0.314 5.314 24 C 0.309 3.691 25 O -0.342 6.342 26 C -0.197 4.197 27 C -0.197 4.197 28 C 0.314 3.686 29 O -0.355 6.355 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.213 0.787 39 H 0.063 0.937 40 H 0.242 0.758 41 H 0.103 0.897 42 H 0.142 0.858 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.437 5.956 9.294 13.894 hybrid contribution 1.092 -0.593 0.320 1.283 sum -7.345 5.363 9.615 13.234 Atomic orbital electron populations 1.22201 0.96478 1.01517 1.01794 1.20765 0.92343 0.97679 0.84792 0.90121 1.22200 0.97761 1.00581 0.96641 1.20280 0.89742 0.95842 0.88195 0.93502 1.22424 1.01507 1.00339 0.98095 1.42457 1.18673 1.39977 1.34818 1.19254 0.93201 1.12873 1.10298 0.91490 1.24549 0.98325 0.98652 0.98958 1.69606 1.37912 1.24750 1.26160 0.86290 0.84710 0.77395 0.78943 1.20851 1.21536 1.22117 1.45960 1.65922 1.14386 1.08681 1.20312 0.76083 0.86842 0.84852 1.90599 1.52013 1.16476 1.85892 1.21564 1.05802 0.98507 0.92234 1.21537 1.02193 0.98729 0.92439 1.21923 1.04528 0.91295 0.84617 1.46797 1.15474 1.39837 1.29308 1.20850 0.82666 0.79998 0.85629 1.90851 1.25553 1.64007 1.53741 1.22471 0.97327 1.02356 0.97539 1.22469 0.97056 1.00021 1.00123 1.20809 0.83061 0.82506 0.82241 1.90775 1.22384 1.50115 1.72267 0.92508 0.92295 0.92876 0.91782 0.90964 0.94614 0.92896 0.93618 0.78691 0.93720 0.75761 0.89707 0.85842 0.90851 0.91409 0.88842 0.88352 0.86186 0.86320 0.86236 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 2 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16 3 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16 5 C 0.17 3.17 2.89 -67.93 -0.20 2.98 16 6 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16 7 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 8 N -0.72 -16.09 3.84 -53.42 -0.21 -16.30 16 9 C -0.22 -5.86 9.93 -15.06 -0.15 -6.01 16 10 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -24.85 12.79 55.49 0.71 -24.14 16 13 Si 0.89 22.19 29.55 -169.99 -5.02 17.16 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 N -0.70 -12.62 3.80 -53.81 -0.20 -12.82 16 18 C 0.53 10.57 7.79 -10.98 -0.09 10.48 16 19 O -0.57 -12.75 15.65 5.56 0.09 -12.67 16 20 C -0.14 -2.52 5.70 -27.88 -0.16 -2.68 16 21 C -0.11 -1.86 4.83 -26.73 -0.13 -1.99 16 22 C 0.10 1.42 5.56 -4.04 -0.02 1.40 16 23 N -0.57 -7.40 2.55 -115.34 -0.29 -7.69 16 24 C 0.52 6.56 8.08 -11.08 -0.09 6.47 16 25 O -0.47 -8.13 17.47 5.60 0.10 -8.03 16 26 C -0.16 -1.05 7.03 -26.94 -0.19 -1.24 16 27 C -0.16 -0.97 7.03 -26.94 -0.19 -1.16 16 28 C 0.53 6.03 8.08 -11.08 -0.09 5.95 16 29 O -0.48 -7.14 17.48 5.61 0.10 -7.04 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.38 8.65 5.70 -40.82 -0.23 8.42 16 39 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.40 7.38 6.51 -40.82 -0.27 7.11 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.12 2.55 7.87 -51.93 -0.41 2.15 16 43 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 44 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 45 H 0.09 1.26 7.83 -51.93 -0.41 0.86 16 46 H 0.10 1.56 7.82 -51.93 -0.41 1.15 16 47 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 412.42 15.07 6.22 6.22 Total: -1.00 -33.11 412.42 -7.92 -41.03 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -8.42 Total: 14.66 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -0.98 Total: 9.62 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.01 Total: -60.95 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: 0.28 Total: -27.74 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.11 -7.92 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134541193.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.829 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds