Wall clock time and date at job start Tue Mar 31 2020 22:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 H 1.09001 * 109.46968 * 305.00340 * 5 4 2 7 7 C 1.52996 * 109.47161 * 184.99876 * 5 4 2 8 8 N 1.46503 * 109.46987 * 64.99735 * 5 4 2 9 9 C 1.34780 * 120.00069 * 205.00005 * 8 5 4 10 10 O 1.21282 * 119.99513 * 0.02562 * 9 8 5 11 11 C 1.50694 * 119.99808 * 180.02562 * 9 8 5 12 12 H 1.08998 * 115.51584 * 34.62892 * 11 9 8 13 13 C 1.53003 * 117.42972 * 179.97438 * 11 9 8 14 14 H 1.08999 * 119.80602 * 354.35141 * 13 11 9 15 15 C 1.54483 * 118.06555 * 198.08132 * 13 11 9 16 16 O 1.44429 * 104.80283 * 321.12989 * 15 13 11 17 17 C 1.44427 * 105.27642 * 319.48876 * 16 15 13 18 18 C 1.53005 * 117.43022 * 249.34399 * 11 9 8 19 19 H 1.08997 * 119.80667 * 4.63993 * 18 11 9 20 20 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 21 21 C 1.46901 * 110.99793 * 275.00325 * 20 2 1 22 22 C 1.50701 * 109.46921 * 179.97438 * 21 20 2 23 23 O 1.21294 * 119.99849 * 0.02562 * 22 21 20 24 24 N 1.34780 * 119.99795 * 179.97438 * 22 21 20 25 25 C 1.37101 * 119.99707 * 180.02562 * 24 22 21 26 26 H 1.08002 * 119.99704 * 359.97438 * 25 24 22 27 27 C 1.38941 * 119.99927 * 180.02562 * 25 24 22 28 28 N 1.31417 * 120.00180 * 359.97438 * 27 25 24 29 29 Si 1.86800 * 120.00273 * 180.02562 * 27 25 24 30 30 H 1.48496 * 109.46986 * 359.97438 * 29 27 25 31 31 H 1.48494 * 109.47457 * 119.99901 * 29 27 25 32 32 H 1.48501 * 109.47104 * 239.99973 * 29 27 25 33 33 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 35 35 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 36 36 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 37 37 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 38 38 H 1.09003 * 109.47242 * 60.00105 * 7 5 4 39 39 H 1.09004 * 109.46882 * 180.02562 * 7 5 4 40 40 H 1.08999 * 109.47153 * 299.99764 * 7 5 4 41 41 H 0.97005 * 120.00187 * 25.00288 * 8 5 4 42 42 H 1.08994 * 110.36832 * 79.96107 * 15 13 11 43 43 H 1.08997 * 110.37201 * 202.30471 * 15 13 11 44 44 H 1.08999 * 110.36922 * 159.34380 * 17 16 15 45 45 H 1.09000 * 110.36916 * 281.56958 * 17 16 15 46 46 H 1.00898 * 110.99995 * 38.95403 * 20 2 1 47 47 H 1.09002 * 109.47401 * 59.99808 * 21 20 2 48 48 H 1.09001 * 109.46874 * 299.99821 * 21 20 2 49 49 H 0.96995 * 120.00011 * 0.02562 * 24 22 21 50 50 H 0.97000 * 119.99884 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6239 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9910 0.2735 10 8 5.9859 -0.0852 -0.2527 11 6 5.9806 -1.7329 1.4369 12 1 5.7448 -2.7957 1.4901 13 6 7.3697 -1.2951 1.9057 14 1 7.9177 -0.5388 1.3437 15 6 8.1831 -2.2737 2.7815 16 8 7.2102 -2.8762 3.6627 17 6 6.3288 -1.7995 4.0495 18 6 6.1213 -0.9761 2.7592 19 1 5.7195 0.0329 2.8514 20 7 2.0196 -0.6925 1.1995 21 6 2.0823 0.2227 2.3469 22 6 2.5872 -0.5217 3.5561 23 8 2.8677 -1.6987 3.4703 24 7 2.7280 0.1207 4.7326 25 6 3.1878 -0.5564 5.8325 26 1 3.4368 -1.6046 5.7562 27 6 3.3325 0.1056 7.0454 28 7 3.0291 1.3809 7.1383 29 14 3.9597 -0.8167 8.5439 30 1 4.2283 -2.2306 8.1783 31 1 5.2130 -0.1830 9.0265 32 1 2.9357 -0.7697 9.6184 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 -0.3633 0.5137 -0.8900 36 1 1.7516 -1.7715 -1.2055 37 1 1.6054 -0.2618 -2.1369 38 1 3.6264 -0.6887 -3.4657 39 1 5.1509 -1.1485 -2.6696 40 1 3.7724 -2.2742 -2.6698 41 1 3.6647 -2.0584 0.2388 42 1 8.6559 -3.0349 2.1610 43 1 8.9335 -1.7329 3.3581 44 1 5.3773 -2.1965 4.4031 45 1 6.7942 -1.1871 4.8219 46 1 1.4495 -1.4979 1.4101 47 1 1.0869 0.6164 2.5525 48 1 2.7587 1.0463 2.1182 49 1 2.5041 1.0619 4.8010 50 1 3.1305 1.8431 7.9850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135231324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:38 Heat of formation + Delta-G solvation = -88.263713 kcal Electronic energy + Delta-G solvation = -31956.412944 eV Core-core repulsion = 27791.508851 eV Total energy + Delta-G solvation = -4164.904093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37867 -39.05728 -38.33212 -37.12682 -34.90324 -33.89437 -33.85421 -31.66429 -31.18801 -30.11297 -28.29506 -26.92349 -26.21277 -26.04467 -23.94587 -22.52443 -20.91911 -20.53267 -20.27055 -19.41432 -19.22893 -17.90221 -17.36146 -16.22228 -16.03367 -15.62149 -15.31020 -14.99182 -14.88973 -14.70328 -14.67078 -14.32922 -14.02330 -13.81192 -13.50709 -13.39388 -13.12960 -12.80443 -12.68358 -12.40900 -12.19546 -12.16104 -12.15825 -11.86576 -11.58523 -11.44142 -11.33973 -11.29452 -11.17739 -11.08091 -10.82371 -10.72429 -10.36784 -10.23798 -9.94018 -9.81293 -9.52552 -9.49171 -9.16116 -8.74706 -8.40559 -8.00226 -7.94600 -6.43776 -3.84416 2.88646 3.14174 3.26054 3.31919 3.41223 3.90141 4.03926 4.07839 4.29075 4.36053 4.57880 4.93022 4.95215 4.99702 5.11977 5.17028 5.17938 5.23787 5.26233 5.29588 5.36244 5.46691 5.51851 5.53169 5.67929 5.69393 5.71758 5.76094 5.80724 5.83019 5.85634 5.88739 6.02041 6.07517 6.10016 6.14898 6.24644 6.26445 6.28086 6.41293 6.56071 6.92307 7.10806 7.19925 7.52874 7.63603 8.01402 8.03914 8.59210 8.69096 9.16016 9.53054 10.03743 10.73922 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.004798 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.119393 B = 5834.563272 C = 8170.711152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.081 3.919 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.152 3.848 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.687 5.687 9 C 0.554 3.446 10 O -0.563 6.563 11 C -0.135 4.135 12 H 0.119 0.881 13 C -0.188 4.188 14 H 0.128 0.872 15 C 0.073 3.927 16 O -0.377 6.377 17 C 0.074 3.926 18 C -0.130 4.130 19 H 0.121 0.879 20 N -0.656 5.656 21 C 0.050 3.950 22 C 0.445 3.555 23 O -0.576 6.576 24 N -0.565 5.565 25 C -0.294 4.294 26 H 0.104 0.896 27 C 0.024 3.976 28 N -0.901 5.901 29 Si 0.921 3.079 30 H -0.267 1.267 31 H -0.282 1.282 32 H -0.283 1.283 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.410 0.590 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.116 0.884 45 H 0.069 0.931 46 H 0.347 0.653 47 H 0.040 0.960 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -2.504 -14.623 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.029 4.029 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.047 3.953 6 H 0.098 0.902 7 C -0.222 4.222 8 N -0.338 5.338 9 C 0.341 3.659 10 O -0.443 6.443 11 C -0.156 4.156 12 H 0.137 0.863 13 C -0.207 4.207 14 H 0.146 0.854 15 C -0.004 4.004 16 O -0.296 6.296 17 C -0.002 4.002 18 C -0.149 4.149 19 H 0.139 0.861 20 N -0.288 5.288 21 C -0.082 4.082 22 C 0.230 3.770 23 O -0.460 6.460 24 N -0.202 5.202 25 C -0.424 4.424 26 H 0.121 0.879 27 C -0.178 4.178 28 N -0.542 5.542 29 Si 0.748 3.252 30 H -0.191 1.191 31 H -0.208 1.208 32 H -0.209 1.209 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.247 0.753 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.166 0.834 47 H 0.058 0.942 48 H 0.098 0.902 49 H 0.223 0.777 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.015 -2.692 -14.967 15.241 hybrid contribution -1.207 0.445 1.257 1.799 sum -0.192 -2.246 -13.710 13.894 Atomic orbital electron populations 1.22512 0.97448 1.02127 1.02058 1.21620 0.92160 0.98214 0.90935 0.90597 1.21917 0.94534 1.01561 0.97312 1.20729 0.91958 0.97219 0.85423 0.90220 1.22208 1.02032 1.00916 0.97070 1.45718 1.17255 1.37718 1.33063 1.19379 0.81242 0.82605 0.82702 1.90627 1.62299 1.31403 1.59976 1.21881 0.98545 1.00668 0.94471 0.86345 1.24022 0.90031 1.03456 1.03212 0.85437 1.22875 0.91492 0.95436 0.90638 1.89152 1.42801 1.32164 1.65482 1.23038 0.95177 0.88093 0.93894 1.23672 1.00363 1.00942 0.89886 0.86097 1.60249 1.57009 1.09085 1.02485 1.21682 0.99614 0.95778 0.91154 1.19726 0.85047 0.88244 0.83994 1.90513 1.55040 1.15862 1.84553 1.41874 1.57962 1.12391 1.07983 1.19661 1.39832 0.96238 0.86627 0.87868 1.25212 0.97762 0.95679 0.99140 1.69617 1.48735 1.08844 1.27020 0.85921 0.78336 0.79807 0.81095 1.19073 1.20758 1.20877 0.92392 0.92585 0.92346 0.91200 0.90520 0.92147 0.92238 0.92664 0.75279 0.89326 0.91520 0.86610 0.91295 0.83386 0.94227 0.90222 0.77685 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.16 37.15 0.34 -1.36 16 2 C 0.08 0.86 2.59 -67.71 -0.18 0.68 16 3 H 0.08 0.87 7.80 -51.93 -0.40 0.47 16 4 C -0.11 -1.05 4.54 -26.73 -0.12 -1.17 16 5 C 0.15 1.75 2.57 -67.93 -0.17 1.58 16 6 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 7 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 8 N -0.69 -9.29 3.80 -53.80 -0.20 -9.49 16 9 C 0.55 9.08 7.57 -10.99 -0.08 9.00 16 10 O -0.56 -10.70 16.01 5.56 0.09 -10.62 16 11 C -0.13 -2.20 5.56 -91.77 -0.51 -2.71 16 12 H 0.12 1.93 8.06 -51.93 -0.42 1.51 16 13 C -0.19 -2.91 6.69 -89.02 -0.60 -3.51 16 14 H 0.13 1.97 7.82 -51.93 -0.41 1.56 16 15 C 0.07 1.03 7.53 37.94 0.29 1.32 16 16 O -0.38 -6.61 11.31 -35.23 -0.40 -7.01 16 17 C 0.07 1.36 7.53 37.92 0.29 1.64 16 18 C -0.13 -2.28 6.95 -89.03 -0.62 -2.90 16 19 H 0.12 2.32 8.14 -51.93 -0.42 1.90 16 20 N -0.66 -8.72 3.48 -107.99 -0.38 -9.10 16 21 C 0.05 0.80 5.97 -4.97 -0.03 0.78 16 22 C 0.44 9.20 7.82 -10.98 -0.09 9.11 16 23 O -0.58 -13.13 15.78 5.55 0.09 -13.04 16 24 N -0.57 -13.05 5.29 -10.96 -0.06 -13.10 16 25 C -0.29 -7.49 9.68 -14.94 -0.14 -7.64 16 26 H 0.10 2.76 7.16 -52.49 -0.38 2.38 16 27 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 28 N -0.90 -23.61 13.05 55.50 0.72 -22.89 16 29 Si 0.92 20.29 29.55 -169.99 -5.02 15.27 16 30 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 31 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 32 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 33 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.41 5.50 7.59 -40.82 -0.31 5.19 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.12 2.43 8.14 -51.93 -0.42 2.01 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.35 4.79 8.17 -39.29 -0.32 4.46 16 47 H 0.04 0.60 7.44 -51.93 -0.39 0.21 16 48 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 49 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 50 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -28.74 409.75 -8.71 -37.45 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -8.35 Total: 22.36 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.37 Total: 4.00 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.09 Total: -54.58 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.22 Total: -30.67 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.74 -8.71 -37.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135231324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.818 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds