Wall clock time and date at job start Tue Mar 31 2020 22:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 H 1.08996 * 109.47701 * 305.00165 * 5 4 2 7 7 C 1.53010 * 109.47319 * 184.99927 * 5 4 2 8 8 N 1.46500 * 109.47003 * 65.00472 * 5 4 2 9 9 C 1.34778 * 120.00057 * 204.99898 * 8 5 4 10 10 O 1.21285 * 119.99833 * 0.02562 * 9 8 5 11 11 C 1.50701 * 120.00225 * 179.97438 * 9 8 5 12 12 H 1.08994 * 115.50838 * 34.63116 * 11 9 8 13 13 C 1.52996 * 117.43578 * 180.02562 * 11 9 8 14 14 H 1.09004 * 119.80358 * 354.34868 * 13 11 9 15 15 C 1.54480 * 118.06709 * 198.08827 * 13 11 9 16 16 O 1.44422 * 104.80260 * 321.12703 * 15 13 11 17 17 C 1.44428 * 105.27251 * 319.48958 * 16 15 13 18 18 C 1.52999 * 117.43202 * 249.35004 * 11 9 8 19 19 H 1.08995 * 119.81122 * 4.63744 * 18 11 9 20 20 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 21 21 C 1.46897 * 111.00172 * 84.99810 * 20 2 1 22 22 C 1.50697 * 109.46908 * 180.02562 * 21 20 2 23 23 O 1.21287 * 120.00522 * 359.97438 * 22 21 20 24 24 N 1.34783 * 119.99988 * 180.02562 * 22 21 20 25 25 C 1.37094 * 120.00145 * 179.97438 * 24 22 21 26 26 H 1.08003 * 120.00160 * 359.97438 * 25 24 22 27 27 C 1.38952 * 120.00073 * 179.97438 * 25 24 22 28 28 N 1.31411 * 119.99993 * 359.97438 * 27 25 24 29 29 Si 1.86796 * 120.00207 * 179.97438 * 27 25 24 30 30 H 1.48502 * 109.47028 * 89.99894 * 29 27 25 31 31 H 1.48498 * 109.47366 * 209.99987 * 29 27 25 32 32 H 1.48503 * 109.47220 * 330.00176 * 29 27 25 33 33 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 34 34 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 36 36 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 37 37 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 38 38 H 1.08994 * 109.46665 * 300.00236 * 7 5 4 39 39 H 1.08999 * 109.46761 * 59.99985 * 7 5 4 40 40 H 1.08993 * 109.46916 * 180.02562 * 7 5 4 41 41 H 0.97004 * 119.99986 * 24.99436 * 8 5 4 42 42 H 1.08997 * 110.37153 * 79.95512 * 15 13 11 43 43 H 1.08997 * 110.37100 * 202.29486 * 15 13 11 44 44 H 1.09003 * 110.37220 * 159.34375 * 17 16 15 45 45 H 1.08998 * 110.37376 * 281.56741 * 17 16 15 46 46 H 1.00899 * 110.99467 * 321.04346 * 20 2 1 47 47 H 1.09005 * 109.47066 * 299.99968 * 21 20 2 48 48 H 1.09001 * 109.47085 * 59.99954 * 21 20 2 49 49 H 0.97005 * 119.99644 * 359.97438 * 24 22 21 50 50 H 0.97000 * 120.00162 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 1 3.9955 -0.9922 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4341 0.5731 11 6 5.5551 2.6565 1.2702 12 1 5.1694 3.1378 2.1689 13 6 6.9457 3.0744 0.7880 14 1 7.6402 2.3201 0.4180 15 6 7.5363 4.3951 1.3297 16 8 6.4166 5.3058 1.3826 17 6 5.6634 5.0530 0.1764 18 6 5.6857 3.5170 0.0119 19 1 5.4224 3.0994 -0.9599 20 7 2.0197 -0.6924 -1.1995 21 6 2.0825 0.2227 -2.3469 22 6 2.5874 -0.5216 -3.5560 23 8 2.8678 -1.6985 -3.4703 24 7 2.7283 0.1207 -4.7325 25 6 3.1881 -0.5563 -5.8324 26 1 3.4379 -1.6043 -5.7561 27 6 3.3329 0.1058 -7.0454 28 7 3.0286 1.3808 -7.1385 29 14 3.9601 -0.8164 -8.5439 30 1 2.8116 -1.3996 -9.2828 31 1 4.6945 0.1213 -9.4307 32 1 4.8729 -1.9043 -8.1094 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5139 -0.8900 36 1 1.6054 -0.2618 2.1369 37 1 1.7517 -1.7715 1.2055 38 1 3.6547 -1.0594 3.4192 39 1 3.8002 -2.4820 2.3593 40 1 5.1715 -1.3611 2.5385 41 1 3.3284 1.4128 1.9028 42 1 7.9505 4.2448 2.3266 43 1 8.3020 4.7741 0.6528 44 1 4.6388 5.4082 0.2875 45 1 6.1407 5.5346 -0.6770 46 1 1.4496 -1.4978 -1.4101 47 1 1.0870 0.6164 -2.5525 48 1 2.7588 1.0463 -2.1182 49 1 2.5044 1.0621 -4.8010 50 1 3.1300 1.8431 -7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135231327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:45 Heat of formation + Delta-G solvation = -119.000555 kcal Electronic energy + Delta-G solvation = -30247.266173 eV Core-core repulsion = 26081.029231 eV Total energy + Delta-G solvation = -4166.236942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80446 -40.42135 -40.08633 -38.42874 -36.34318 -35.84484 -35.33539 -33.33629 -32.70171 -31.37562 -29.69099 -27.97858 -27.69243 -27.40408 -25.69382 -23.78198 -22.10572 -21.71506 -21.42079 -21.16179 -20.86896 -19.94302 -18.81957 -17.80988 -17.27607 -16.99758 -16.85039 -16.43444 -16.37136 -16.26663 -16.08774 -15.77053 -15.56130 -15.29852 -14.81168 -14.79350 -14.44191 -14.20414 -13.91666 -13.61645 -13.55490 -13.53725 -13.35941 -13.17147 -12.98699 -12.84075 -12.79210 -12.66926 -12.57391 -12.44702 -12.15653 -12.04963 -11.73219 -11.68477 -11.53016 -11.39902 -11.24749 -10.94061 -10.58344 -10.37343 -10.03683 -10.01824 -9.22886 -8.49073 -5.97765 1.35371 1.38986 1.40826 1.51998 2.02765 2.07363 2.27256 2.56566 2.93513 2.96926 3.17926 3.53708 3.54865 3.58970 3.70738 3.76517 3.84713 4.04061 4.13408 4.20059 4.31999 4.32462 4.41695 4.44793 4.50143 4.53664 4.56921 4.61050 4.68416 4.75378 4.77950 4.82765 4.84889 4.86432 4.90796 4.98444 5.02755 5.16928 5.26125 5.32169 5.38287 5.40133 5.62840 5.70732 5.91017 6.15465 6.47800 6.57851 6.61178 7.10351 7.32132 7.53327 8.09348 8.68435 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008045 B = 0.003292 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.670171 B = 8503.599775 C =10703.056796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 H 0.080 0.920 4 C -0.102 4.102 5 C 0.145 3.855 6 H 0.057 0.943 7 C -0.155 4.155 8 N -0.699 5.699 9 C 0.537 3.463 10 O -0.586 6.586 11 C -0.137 4.137 12 H 0.149 0.851 13 C -0.178 4.178 14 H 0.115 0.885 15 C 0.077 3.923 16 O -0.385 6.385 17 C 0.078 3.922 18 C -0.174 4.174 19 H 0.112 0.888 20 N -0.676 5.676 21 C 0.073 3.927 22 C 0.436 3.564 23 O -0.623 6.623 24 N -0.573 5.573 25 C -0.336 4.336 26 H 0.076 0.924 27 C -0.011 4.011 28 N -0.919 5.919 29 Si 0.991 3.009 30 H -0.268 1.268 31 H -0.269 1.269 32 H -0.276 1.276 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.414 0.586 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.084 0.916 46 H 0.343 0.657 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 9.162 22.411 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.028 4.028 3 H 0.098 0.902 4 C -0.140 4.140 5 C 0.040 3.960 6 H 0.075 0.925 7 C -0.214 4.214 8 N -0.351 5.351 9 C 0.324 3.676 10 O -0.466 6.466 11 C -0.158 4.158 12 H 0.166 0.834 13 C -0.197 4.197 14 H 0.133 0.867 15 C 0.001 3.999 16 O -0.304 6.304 17 C 0.001 3.999 18 C -0.193 4.193 19 H 0.130 0.870 20 N -0.309 5.309 21 C -0.060 4.060 22 C 0.223 3.777 23 O -0.510 6.510 24 N -0.210 5.210 25 C -0.465 4.465 26 H 0.094 0.906 27 C -0.211 4.211 28 N -0.560 5.560 29 Si 0.815 3.185 30 H -0.193 1.193 31 H -0.193 1.193 32 H -0.201 1.201 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.251 0.749 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.162 0.838 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.229 0.771 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.596 8.197 22.274 23.742 hybrid contribution -0.708 -0.131 -1.552 1.711 sum -1.304 8.066 20.723 22.275 Atomic orbital electron populations 1.22456 0.95670 1.02565 1.02908 1.21728 0.93493 0.98024 0.89571 0.90169 1.21841 0.92270 1.02492 0.97435 1.20882 0.96010 0.80579 0.98499 0.92453 1.22110 1.00228 1.00489 0.98542 1.45818 1.15830 1.11639 1.61789 1.19922 0.81994 0.88855 0.76796 1.90729 1.52793 1.57799 1.45252 1.22036 1.01099 0.91823 1.00838 0.83388 1.24038 0.90597 1.00607 1.04414 0.86683 1.23059 0.89175 0.84362 1.03308 1.89139 1.39609 1.59981 1.41702 1.23058 0.98489 0.90058 0.88266 1.24041 1.03303 0.96028 0.95932 0.87004 1.60167 1.58665 1.09035 1.02991 1.21438 1.00453 0.95147 0.88965 1.20957 0.83418 0.88062 0.85224 1.90487 1.56572 1.18456 1.85453 1.41919 1.58369 1.12505 1.08225 1.19649 1.42331 0.95909 0.88621 0.90612 1.26014 0.97145 0.96627 1.01284 1.69664 1.48589 1.09612 1.28136 0.84958 0.78502 0.77848 0.77216 1.19341 1.19338 1.20081 0.89551 0.92326 0.93507 0.87682 0.90082 0.90204 0.91196 0.94855 0.74859 0.86992 0.89654 0.86605 0.89830 0.83781 0.91648 0.89273 0.77066 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.16 71.98 0.66 -2.23 16 2 C 0.08 1.65 2.53 44.91 0.11 1.76 16 3 H 0.08 1.57 7.28 -2.39 -0.02 1.55 16 4 C -0.10 -1.70 4.43 30.59 0.14 -1.57 16 5 C 0.14 3.32 2.52 44.99 0.11 3.43 16 6 H 0.06 1.99 7.05 -2.39 -0.02 1.97 16 7 C -0.16 -3.15 9.48 71.99 0.68 -2.47 16 8 N -0.70 -13.94 4.45 -442.52 -1.97 -15.91 16 9 C 0.54 14.35 7.57 87.66 0.66 15.01 16 10 O -0.59 -22.29 16.01 -3.05 -0.05 -22.34 16 11 C -0.14 -2.77 5.56 -11.54 -0.06 -2.83 16 12 H 0.15 2.22 8.06 -2.39 -0.02 2.20 16 13 C -0.18 -3.75 6.68 -9.80 -0.07 -3.81 16 14 H 0.12 2.93 7.82 -2.39 -0.02 2.92 16 15 C 0.08 1.23 7.53 72.49 0.55 1.77 16 16 O -0.39 -6.95 11.31 -148.98 -1.69 -8.64 16 17 C 0.08 1.23 7.54 72.49 0.55 1.78 16 18 C -0.17 -3.57 6.95 -9.79 -0.07 -3.64 16 19 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 20 N -0.68 -21.07 5.24 -495.59 -2.60 -23.67 16 21 C 0.07 2.57 5.97 85.56 0.51 3.08 16 22 C 0.44 21.64 7.82 87.66 0.69 22.32 16 23 O -0.62 -36.09 15.78 -3.05 -0.05 -36.14 16 24 N -0.57 -30.45 5.29 -306.98 -1.62 -32.07 16 25 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 26 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 27 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 28 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 29 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 30 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 31 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 32 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.97 8.13 -2.39 -0.02 0.96 16 35 H 0.05 0.87 7.45 -2.38 -0.02 0.85 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.41 5.06 8.60 -92.71 -0.80 4.26 16 42 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.34 11.30 8.17 -89.69 -0.73 10.56 16 47 H 0.07 2.01 7.44 -2.38 -0.02 1.99 16 48 H 0.09 3.02 8.06 -2.39 -0.02 3.00 16 49 H 0.40 19.88 7.90 -92.70 -0.73 19.15 16 50 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -78.87 411.91 -1.22 -80.08 By element: Atomic # 1 Polarization: 50.39 SS G_CDS: -1.29 Total: 49.10 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.74 Total: 13.60 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -5.91 Total: -121.69 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -1.78 Total: -67.12 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -78.87 -1.22 -80.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135231327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.916 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds