Wall clock time and date at job start Tue Mar 31 2020 23:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46744 * 55.00146 * 4 3 2 6 6 C 1.52995 * 109.47234 * 295.00525 * 4 3 2 7 7 C 1.50703 * 109.47148 * 175.00182 * 4 3 2 8 8 O 1.21279 * 119.99456 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99766 * 180.02562 * 7 4 3 10 10 C 1.47289 * 135.91965 * 359.63293 * 9 7 4 11 11 C 1.52528 * 87.57526 * 153.99388 * 10 9 7 12 12 C 1.47296 * 135.91155 * 179.97438 * 9 7 4 13 13 C 1.53125 * 116.54847 * 268.65187 * 11 10 9 14 14 C 1.54687 * 104.56904 * 228.35790 * 13 11 10 15 15 N 1.48665 * 104.65924 * 23.67747 * 14 13 11 16 16 C 1.46894 * 111.00281 * 201.53200 * 15 14 13 17 17 C 1.50696 * 109.47383 * 290.13013 * 16 15 14 18 18 O 1.21294 * 119.99925 * 359.97438 * 17 16 15 19 19 N 1.34781 * 120.00048 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99942 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99638 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99649 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00632 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99723 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47191 * 89.99601 * 24 22 20 26 26 H 1.48497 * 109.47092 * 209.99843 * 24 22 20 27 27 H 1.48504 * 109.47162 * 330.00134 * 24 22 20 28 28 C 1.48845 * 104.43343 * 321.21917 * 15 14 13 29 29 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 30 30 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 31 31 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 33 33 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 34 34 H 1.09002 * 109.47112 * 179.97438 * 6 4 3 35 35 H 1.09006 * 109.47389 * 299.99793 * 6 4 3 36 36 H 1.09003 * 109.47743 * 59.99455 * 6 4 3 37 37 H 1.08996 * 113.51689 * 268.65312 * 10 9 7 38 38 H 1.09003 * 113.51786 * 39.25169 * 10 9 7 39 39 H 1.09003 * 113.52028 * 320.74809 * 12 9 7 40 40 H 1.09003 * 113.51771 * 91.28467 * 12 9 7 41 41 H 1.08999 * 110.41826 * 347.12987 * 13 11 10 42 42 H 1.09004 * 110.41978 * 109.58342 * 13 11 10 43 43 H 1.08998 * 110.40240 * 142.47235 * 14 13 11 44 44 H 1.09000 * 110.39849 * 264.76809 * 14 13 11 45 45 H 1.09006 * 109.46731 * 50.13173 * 16 15 14 46 46 H 1.09004 * 109.47339 * 170.12402 * 16 15 14 47 47 H 0.96994 * 119.99744 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00161 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.47180 * 279.67073 * 28 15 14 50 50 H 1.09008 * 110.47292 * 157.06840 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5681 -0.8410 6 6 3.9952 0.5367 1.3082 7 6 4.1481 2.5559 -0.1231 8 8 3.4349 3.5336 -0.2035 9 7 5.4884 2.6957 -0.1446 10 6 6.6480 1.7909 -0.0671 11 6 7.4375 2.8414 -0.8415 12 6 6.4332 3.8209 -0.2497 13 6 7.4400 2.7087 -2.3670 14 6 8.9286 2.8401 -2.7666 15 7 9.6817 2.4471 -1.5465 16 6 11.0475 2.9871 -1.5742 17 6 11.8478 2.2752 -2.6342 18 8 11.3313 1.4034 -3.3008 19 7 13.1375 2.6073 -2.8416 20 6 13.8657 1.9593 -3.8057 21 1 13.4059 1.1824 -4.3987 22 6 15.1954 2.3013 -4.0191 23 7 15.7549 3.2462 -3.2973 24 14 16.1878 1.4179 -5.3322 25 1 16.0536 2.1393 -6.6232 26 1 17.6172 1.3817 -4.9316 27 1 15.6813 0.0303 -5.4856 28 6 8.8995 3.0319 -0.4233 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 5.0818 0.4503 1.3084 35 1 3.6793 1.1531 2.1499 36 1 3.5521 -0.4551 1.3978 37 1 7.0111 1.6352 0.9487 38 1 6.5093 0.8583 -0.6141 39 1 6.1141 4.5929 -0.9500 40 1 6.7362 4.2260 0.7158 41 1 7.0509 1.7350 -2.6646 42 1 6.8529 3.5081 -2.8192 43 1 9.1617 2.1658 -3.5906 44 1 9.1586 3.8693 -3.0421 45 1 11.0123 4.0529 -1.7999 46 1 11.5173 2.8370 -0.6021 47 1 13.5504 3.3047 -2.3088 48 1 16.6832 3.4846 -3.4460 49 1 9.1287 4.0915 -0.3101 50 1 9.1039 2.4956 0.5035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147206806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:11 Heat of formation + Delta-G solvation = -94.654598 kcal Electronic energy + Delta-G solvation = -29496.046045 eV Core-core repulsion = 25330.864823 eV Total energy + Delta-G solvation = -4165.181222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14633 -40.48381 -39.83040 -38.71076 -37.59740 -35.85522 -34.78127 -33.29472 -32.49368 -30.45845 -28.81699 -28.28219 -27.12493 -26.96414 -26.59198 -25.48036 -23.32446 -22.55967 -20.99602 -20.32755 -19.87758 -19.49750 -18.37753 -17.75026 -17.46457 -17.16261 -16.89148 -16.61050 -16.48017 -16.27281 -16.14865 -15.82716 -15.62075 -15.45909 -15.18183 -14.77066 -14.34947 -14.19410 -14.14783 -13.68086 -13.57121 -13.45104 -13.34539 -13.23531 -12.93348 -12.85784 -12.54258 -12.46546 -12.39221 -12.35733 -12.27563 -12.21817 -12.10830 -11.94565 -11.86646 -11.45188 -11.28595 -10.82640 -10.70623 -10.26012 -9.97237 -9.77827 -9.30143 -8.43983 -5.92075 1.39174 1.42923 1.48570 1.55282 1.66431 2.10520 2.30500 2.74671 2.82466 3.22733 3.23195 3.41869 3.45063 3.63656 3.73720 3.83260 3.88852 3.99986 4.22185 4.26394 4.34887 4.40607 4.44564 4.46427 4.48052 4.55481 4.58246 4.59948 4.60976 4.64118 4.68049 4.75480 4.80913 4.83425 4.86238 4.86587 4.92699 4.98722 5.00538 5.17834 5.24346 5.25336 5.43556 5.88989 5.96608 6.10859 6.13283 6.63675 6.64633 7.00327 7.16755 7.61099 8.17432 8.73418 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028585 B = 0.001782 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.292550 B =15709.500403 C =16148.157712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.084 3.916 4 C -0.101 4.101 5 H 0.111 0.889 6 C -0.134 4.134 7 C 0.548 3.452 8 O -0.588 6.588 9 N -0.643 5.643 10 C 0.120 3.880 11 C -0.092 4.092 12 C 0.118 3.882 13 C -0.087 4.087 14 C 0.039 3.961 15 N -0.504 5.504 16 C 0.047 3.953 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.274 1.274 28 C 0.051 3.949 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.067 0.933 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.236 -0.670 12.294 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.007 3.993 4 C -0.122 4.122 5 H 0.129 0.871 6 C -0.191 4.191 7 C 0.339 3.661 8 O -0.469 6.469 9 N -0.376 5.376 10 C -0.002 4.002 11 C -0.093 4.093 12 C -0.005 4.005 13 C -0.125 4.125 14 C -0.089 4.089 15 N -0.229 5.229 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.076 4.076 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.132 0.868 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.822 -1.438 11.863 26.652 hybrid contribution 0.701 1.251 -0.812 1.648 sum -23.121 -0.187 11.051 25.628 Atomic orbital electron populations 1.22942 0.79265 1.04075 1.00750 1.87780 1.21531 1.27540 1.95589 1.22125 0.91883 0.84358 1.00912 1.21092 0.94680 0.93210 1.03205 0.87062 1.21714 1.02386 1.01429 0.93597 1.20274 0.80068 0.90990 0.74761 1.90688 1.60744 1.42546 1.52925 1.49682 1.03282 1.13205 1.71449 1.23292 0.80398 0.94673 1.01833 1.21967 0.94047 0.97754 0.95533 1.23061 0.84591 0.90939 1.01874 1.21890 0.94637 1.02713 0.93283 1.23101 0.93429 0.98368 0.94032 1.65141 0.99986 1.54356 1.03369 1.21925 0.90663 0.96887 0.98948 1.20832 0.82666 0.86227 0.87368 1.90484 1.71154 1.36043 1.52512 1.41936 1.09898 1.35529 1.34074 1.19638 0.93861 1.18338 1.14244 0.90433 1.25982 0.97452 0.97451 1.00337 1.69665 1.14626 1.30746 1.41150 0.84965 0.77361 0.78334 0.77898 1.19805 1.19587 1.19863 1.22985 0.89854 0.99604 0.95186 0.93212 0.93626 0.87861 0.92855 0.93516 0.90601 0.92509 0.90237 0.86359 0.89277 0.90995 0.87098 0.90842 0.90512 0.92320 0.94331 0.91291 0.86756 0.77046 0.91399 0.91456 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.20 10.24 -148.98 -1.53 -8.73 16 3 C 0.08 1.56 4.67 71.98 0.34 1.90 16 4 C -0.10 -1.72 2.84 -11.54 -0.03 -1.75 16 5 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 6 C -0.13 -1.75 8.97 71.98 0.65 -1.10 16 7 C 0.55 11.91 7.40 87.66 0.65 12.56 16 8 O -0.59 -17.37 16.69 -3.03 -0.05 -17.42 16 9 N -0.64 -11.26 3.63 -858.24 -3.12 -14.37 16 10 C 0.12 1.60 5.99 83.61 0.50 2.10 16 11 C -0.09 -1.50 1.29 -52.45 -0.07 -1.57 16 12 C 0.12 1.82 7.92 83.52 0.66 2.48 16 13 C -0.09 -1.88 6.53 31.21 0.20 -1.68 16 14 C 0.04 1.14 5.82 86.54 0.50 1.64 16 15 N -0.50 -14.48 5.06 -886.61 -4.49 -18.97 16 16 C 0.05 1.51 5.30 85.56 0.45 1.97 16 17 C 0.44 20.41 7.58 87.66 0.66 21.08 16 18 O -0.62 -33.35 14.43 -3.07 -0.04 -33.39 16 19 N -0.58 -29.04 5.29 -306.98 -1.62 -30.67 16 20 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 24 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 28 C 0.05 0.91 5.95 86.01 0.51 1.43 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.96 7.95 -2.39 -0.02 0.94 16 34 H 0.08 0.80 6.30 -2.39 -0.02 0.78 16 35 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.08 1.02 7.82 -2.39 -0.02 1.00 16 37 H 0.12 1.03 7.92 -2.39 -0.02 1.01 16 38 H 0.09 1.20 7.95 -2.39 -0.02 1.18 16 39 H 0.07 1.27 7.93 -2.39 -0.02 1.25 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 42 H 0.08 1.56 7.83 -2.38 -0.02 1.54 16 43 H 0.06 2.21 6.93 -2.39 -0.02 2.20 16 44 H 0.04 1.11 7.82 -2.39 -0.02 1.09 16 45 H 0.07 1.96 7.88 -2.38 -0.02 1.95 16 46 H 0.11 3.12 8.13 -2.38 -0.02 3.10 16 47 H 0.40 18.87 7.90 -92.71 -0.73 18.13 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.07 1.03 7.98 -2.39 -0.02 1.01 16 50 H 0.11 1.52 7.86 -2.38 -0.02 1.50 16 Total: -1.00 -74.09 404.23 -0.77 -74.86 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.20 Total: 30.28 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 7.56 Total: 22.57 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -8.94 Total: -112.92 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -1.62 Total: -59.54 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.09 -0.77 -74.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147206806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.794 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds