Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00193 * 2 1 4 4 H 1.09004 * 109.47109 * 329.99722 * 3 2 1 5 5 C 1.52998 * 109.47174 * 90.00423 * 3 2 1 6 6 C 1.52999 * 109.46916 * 210.00003 * 3 2 1 7 7 C 1.50707 * 109.47188 * 65.00041 * 6 3 2 8 8 O 1.21275 * 119.99748 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99821 * 179.97438 * 7 6 3 10 10 C 1.47890 * 134.33985 * 180.02562 * 9 7 6 11 11 C 1.52386 * 85.59352 * 156.48652 * 10 9 7 12 12 C 1.47886 * 134.34474 * 359.97182 * 9 7 6 13 13 C 1.53637 * 116.37921 * 141.33966 * 11 10 9 14 14 C 1.54595 * 102.81370 * 95.34845 * 13 11 10 15 15 N 1.47557 * 107.32808 * 20.84134 * 14 13 11 16 16 C 1.46906 * 110.99755 * 123.21876 * 15 14 13 17 17 C 1.50699 * 109.47140 * 69.87674 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47268 * 90.00146 * 24 22 20 26 26 H 1.48500 * 109.47502 * 210.00166 * 24 22 20 27 27 H 1.48501 * 109.47054 * 330.00549 * 24 22 20 28 28 C 1.48139 * 108.68546 * 0.87288 * 15 14 13 29 29 H 1.09008 * 109.47146 * 300.00241 * 1 2 3 30 30 H 1.08998 * 109.47256 * 59.99668 * 1 2 3 31 31 H 1.08996 * 109.47723 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47348 * 59.99504 * 5 3 2 33 33 H 1.09002 * 109.47235 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46510 * 299.99767 * 5 3 2 35 35 H 1.09000 * 109.47333 * 304.99999 * 6 3 2 36 36 H 1.08999 * 109.47349 * 184.99587 * 6 3 2 37 37 H 1.09000 * 113.85537 * 42.31825 * 10 9 7 38 38 H 1.09002 * 113.96434 * 270.66536 * 10 9 7 39 39 H 1.08999 * 113.85743 * 89.34816 * 12 9 7 40 40 H 1.08999 * 113.85213 * 317.67871 * 12 9 7 41 41 H 1.09001 * 110.74629 * 337.01966 * 13 11 10 42 42 H 1.09000 * 110.74819 * 213.67876 * 13 11 10 43 43 H 1.08999 * 109.87377 * 261.41188 * 14 13 11 44 44 H 1.08997 * 109.99576 * 140.34369 * 14 13 11 45 45 H 1.09004 * 109.47040 * 189.87611 * 16 15 14 46 46 H 1.09000 * 109.47033 * 309.87564 * 16 15 14 47 47 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.41105 * 96.34150 * 28 15 14 50 50 H 1.09008 * 110.40619 * 218.76786 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 3.3589 1.2631 -0.7213 7 6 3.1416 0.9235 -2.1734 8 8 2.0186 0.7334 -2.5901 9 7 4.1952 0.8309 -3.0088 10 6 4.3497 0.5270 -4.4478 11 6 5.6667 1.2868 -4.3465 12 6 5.6566 0.9937 -2.8513 13 6 6.8475 0.7157 -5.1465 14 6 6.7995 1.5319 -6.4586 15 7 6.0423 2.7674 -6.1801 16 6 6.8419 3.9579 -6.4987 17 6 7.0081 4.0664 -7.9925 18 8 6.5091 3.2342 -8.7202 19 7 7.7112 5.0883 -8.5198 20 6 7.8620 5.1872 -9.8789 21 1 7.4177 4.4462 -10.5269 22 6 8.5863 6.2409 -10.4226 23 7 9.1265 7.1429 -9.6342 24 14 8.7924 6.3755 -12.2743 25 1 7.6773 7.1769 -12.8395 26 1 10.0846 7.0396 -12.5817 27 1 8.7790 5.0170 -12.8738 28 6 5.6380 2.7652 -4.7550 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.8829 1.0774 1.9563 33 1 2.6616 2.7669 1.4425 34 1 1.2569 1.8014 1.9563 35 1 3.9931 0.5050 -0.2618 36 1 3.8427 2.2368 -0.6444 37 1 3.6085 1.0123 -5.0829 38 1 4.4687 -0.5343 -4.6659 39 1 6.1757 0.0748 -2.5788 40 1 5.9412 1.8453 -2.2334 41 1 6.7010 -0.3457 -5.3466 42 1 7.7875 0.8845 -4.6211 43 1 6.2960 0.9560 -7.2350 44 1 7.8108 1.7815 -6.7795 45 1 6.3348 4.8471 -6.1240 46 1 7.8220 3.8736 -6.0292 47 1 8.1099 5.7540 -7.9378 48 1 9.6325 7.8783 -10.0137 49 1 6.3472 3.3383 -4.1577 50 1 4.6321 3.1706 -4.6446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147217378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = -97.728959 kcal Electronic energy + Delta-G solvation = -29574.643936 eV Core-core repulsion = 25409.329400 eV Total energy + Delta-G solvation = -4165.314537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97750 -40.43401 -39.81982 -38.64344 -37.44291 -35.86999 -33.86815 -33.30694 -32.58842 -30.41783 -29.27924 -28.49083 -27.56964 -27.09474 -26.59324 -25.34172 -22.49717 -22.35317 -20.97882 -20.47074 -19.85427 -19.55541 -18.03326 -17.82870 -17.66201 -17.34770 -16.74952 -16.68668 -16.43078 -16.21517 -15.97679 -15.64803 -15.54808 -15.26756 -15.03086 -14.64325 -14.26612 -14.11959 -13.79507 -13.73371 -13.55986 -13.45530 -13.34029 -13.11891 -12.95575 -12.93750 -12.88173 -12.69041 -12.42290 -12.39940 -12.31498 -12.11925 -11.98832 -11.89302 -11.67814 -11.48635 -11.40491 -10.73894 -10.51204 -10.29986 -9.98992 -9.69704 -9.13971 -8.45540 -5.93790 1.37963 1.41532 1.53990 1.67379 1.84345 2.08383 2.29126 2.78229 2.87768 3.21299 3.27018 3.41781 3.43091 3.65772 3.77747 3.84455 4.02952 4.19295 4.27489 4.30319 4.34281 4.42918 4.45785 4.46889 4.53908 4.55316 4.58032 4.61198 4.64528 4.69008 4.71427 4.77045 4.79690 4.85895 4.89072 4.93117 4.94824 5.03026 5.05406 5.18079 5.31146 5.32430 5.41892 5.91678 6.09474 6.16661 6.29262 6.63025 6.75278 7.14995 7.19262 7.58974 8.15585 8.71872 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.001817 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.793837 B =15403.205763 C =15598.401456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.402 6.402 3 C 0.091 3.909 4 H 0.050 0.950 5 C -0.166 4.166 6 C -0.126 4.126 7 C 0.526 3.474 8 O -0.588 6.588 9 N -0.649 5.649 10 C 0.118 3.882 11 C -0.095 4.095 12 C 0.131 3.869 13 C -0.112 4.112 14 C 0.056 3.944 15 N -0.535 5.535 16 C 0.056 3.944 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.274 1.274 28 C 0.071 3.929 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.080 0.920 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -10.541 26.094 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.322 6.322 3 C 0.033 3.967 4 H 0.069 0.931 5 C -0.224 4.224 6 C -0.165 4.165 7 C 0.317 3.683 8 O -0.469 6.469 9 N -0.384 5.384 10 C -0.005 4.005 11 C -0.097 4.097 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.071 4.071 15 N -0.260 5.260 16 C -0.075 4.075 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.056 4.056 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.413 -11.143 25.173 28.266 hybrid contribution 0.458 0.773 -0.902 1.273 sum -5.956 -10.370 24.271 27.057 Atomic orbital electron populations 1.22743 0.80421 1.02987 0.99802 1.87823 1.20678 1.28517 1.95170 1.21987 0.93591 0.84757 0.96352 0.93135 1.22234 1.02980 1.02687 0.94453 1.21865 0.99050 1.06410 0.89196 1.20989 0.82938 0.75696 0.88642 1.90677 1.24925 1.52612 1.78655 1.50356 1.07871 1.69569 1.10615 1.22965 0.95507 1.00334 0.81649 1.22297 0.95078 0.95447 0.96831 1.23253 0.77759 1.04071 0.93930 1.22557 0.98142 1.00487 0.93880 1.22672 0.95785 0.90608 0.98067 1.63151 1.40927 1.01307 1.20631 1.21905 0.98213 0.95650 0.91729 1.20885 0.81992 0.82894 0.91508 1.90493 1.52848 1.43645 1.63340 1.41929 1.47638 1.24540 1.07286 1.19627 1.32533 1.10452 0.83515 0.90571 1.25999 0.95877 0.94817 1.04574 1.69668 1.35313 1.13996 1.37148 0.84953 0.78066 0.78324 0.77140 1.19850 1.19397 1.19896 1.22634 1.01165 0.95035 0.86731 0.92660 0.95363 0.89338 0.91065 0.89565 0.92167 0.86408 0.84742 0.92542 0.88637 0.86411 0.86823 0.88830 0.88144 0.93128 0.94346 0.87734 0.90631 0.77010 0.91345 0.90216 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.82 113.37 1.23 1.89 16 2 O -0.40 -8.73 9.58 -135.18 -1.29 -10.02 16 3 C 0.09 1.50 2.27 30.59 0.07 1.57 16 4 H 0.05 0.99 7.60 -2.39 -0.02 0.97 16 5 C -0.17 -1.63 9.53 71.98 0.69 -0.94 16 6 C -0.13 -1.70 5.15 29.85 0.15 -1.55 16 7 C 0.53 11.97 7.94 87.66 0.70 12.66 16 8 O -0.59 -19.38 16.14 10.78 0.17 -19.20 16 9 N -0.65 -12.12 3.62 -863.38 -3.12 -15.25 16 10 C 0.12 2.50 8.14 85.91 0.70 3.20 16 11 C -0.10 -1.58 0.99 -52.16 -0.05 -1.63 16 12 C 0.13 1.29 7.98 85.90 0.69 1.98 16 13 C -0.11 -1.89 6.35 31.35 0.20 -1.69 16 14 C 0.06 1.65 5.67 86.72 0.49 2.14 16 15 N -0.54 -16.78 4.86 -891.48 -4.33 -21.11 16 16 C 0.06 1.90 5.03 85.56 0.43 2.33 16 17 C 0.44 21.03 7.43 87.66 0.65 21.68 16 18 O -0.62 -34.69 15.12 -3.06 -0.05 -34.74 16 19 N -0.58 -29.62 5.29 -306.99 -1.62 -31.24 16 20 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 24 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.07 1.53 6.09 86.20 0.53 2.05 16 29 H 0.05 0.74 7.87 -2.38 -0.02 0.72 16 30 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.60 7.87 -2.38 -0.02 0.58 16 35 H 0.12 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 38 H 0.10 1.80 8.04 -2.39 -0.02 1.78 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 0.55 8.12 -2.39 -0.02 0.53 16 41 H 0.09 1.35 7.99 -2.39 -0.02 1.33 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.24 7.31 -2.39 -0.02 1.22 16 45 H 0.10 3.15 8.07 -2.38 -0.02 3.13 16 46 H 0.08 2.16 7.96 -2.39 -0.02 2.14 16 47 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.08 1.30 7.80 -2.39 -0.02 1.29 16 50 H 0.07 1.65 8.07 -2.38 -0.02 1.64 16 Total: -1.00 -80.94 408.50 0.01 -80.94 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.20 Total: 29.33 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 7.74 Total: 25.29 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -8.79 Total: -116.86 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -1.17 Total: -63.97 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -80.94 0.01 -80.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147217378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.792 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds