Wall clock time and date at job start Tue Mar 31 2020 23:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47133 * 2 1 4 4 O 1.42904 * 109.46737 * 119.99239 * 2 1 3 5 5 C 1.52999 * 109.47476 * 239.99272 * 2 1 3 6 6 H 1.08999 * 113.42859 * 313.65164 * 5 2 1 7 7 C 1.50566 * 114.37649 * 87.30082 * 5 2 1 8 8 O 1.21282 * 131.85174 * 293.43435 * 7 5 2 9 9 N 1.34608 * 96.30566 * 113.39450 * 7 5 2 10 10 C 1.46359 * 90.66465 * 0.02562 * 9 7 5 11 11 H 1.08999 * 113.04529 * 244.60917 * 10 9 7 12 12 C 1.53004 * 113.05304 * 115.45111 * 10 9 7 13 13 H 1.08997 * 109.47046 * 204.50339 * 12 10 9 14 14 C 1.52995 * 109.47036 * 324.50577 * 12 10 9 15 15 C 1.50704 * 109.46892 * 84.50477 * 12 10 9 16 16 O 1.21286 * 120.00133 * 335.20780 * 15 12 10 17 17 N 1.34772 * 119.99985 * 155.21787 * 15 12 10 18 18 C 1.47077 * 120.88288 * 175.21806 * 17 15 12 19 19 C 1.53241 * 108.52064 * 231.19884 * 18 17 15 20 20 N 1.46895 * 109.33855 * 306.16990 * 19 18 17 21 21 C 1.46903 * 110.99645 * 187.25103 * 20 19 18 22 22 C 1.50701 * 109.46938 * 169.99917 * 21 20 19 23 23 H 1.07998 * 120.00336 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00050 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99763 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00284 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47079 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.46816 * 299.99753 * 26 24 22 29 29 H 1.48499 * 109.47227 * 59.99388 * 26 24 22 30 30 C 1.46901 * 111.27296 * 63.10608 * 20 19 18 31 31 C 1.47081 * 120.87818 * 355.23008 * 17 15 12 32 32 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47104 * 300.00657 * 1 2 3 34 34 H 1.08998 * 109.46460 * 60.00716 * 1 2 3 35 35 H 0.96697 * 114.00383 * 60.00524 * 4 2 1 36 36 H 0.96998 * 134.67051 * 179.97438 * 9 7 5 37 37 H 1.09003 * 109.47694 * 64.97735 * 14 12 10 38 38 H 1.09004 * 109.47238 * 184.97631 * 14 12 10 39 39 H 1.09000 * 109.46997 * 304.97630 * 14 12 10 40 40 H 1.09003 * 109.63137 * 111.49061 * 18 17 15 41 41 H 1.08999 * 109.63025 * 350.91031 * 18 17 15 42 42 H 1.09006 * 109.49166 * 186.20693 * 19 18 17 43 43 H 1.08999 * 109.49018 * 66.13310 * 19 18 17 44 44 H 1.08997 * 109.47412 * 50.00437 * 21 20 19 45 45 H 1.08996 * 109.47276 * 289.99742 * 21 20 19 46 46 H 0.97005 * 119.99667 * 180.02562 * 25 24 22 47 47 H 1.08998 * 109.48732 * 56.84877 * 30 20 19 48 48 H 1.08994 * 109.49500 * 176.93623 * 30 20 19 49 49 H 1.09007 * 109.62874 * 248.50721 * 31 17 15 50 50 H 1.08990 * 109.63007 * 8.89805 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0401 -0.7214 -1.2491 6 1 1.5338 -1.6675 -1.4403 7 6 2.1864 0.1611 -2.4602 8 8 1.3688 0.7450 -3.1395 9 7 3.5283 0.0863 -2.5365 10 6 3.5633 -0.7872 -1.3626 11 1 4.0732 -0.3371 -0.5109 12 6 4.0809 -2.1923 -1.6767 13 1 3.6956 -2.8950 -0.9378 14 6 3.6101 -2.6094 -3.0713 15 6 5.5873 -2.1939 -1.6337 16 8 6.2007 -1.1658 -1.8278 17 7 6.2530 -3.3379 -1.3796 18 6 7.7220 -3.3850 -1.4358 19 6 8.1375 -4.5570 -2.3314 20 7 7.4945 -5.7876 -1.8517 21 6 7.9997 -6.9620 -2.5753 22 6 7.5097 -8.2170 -1.9002 23 1 6.8858 -8.1491 -1.0213 24 6 7.8588 -9.4521 -2.4040 25 7 8.6190 -9.5348 -3.4740 26 14 7.2509 -11.0079 -1.5676 27 1 7.7617 -12.1950 -2.2990 28 1 7.7413 -11.0404 -0.1663 29 1 5.7660 -11.0249 -1.5729 30 6 6.0315 -5.6978 -1.9503 31 6 5.5297 -4.5725 -1.0391 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8898 34 1 -0.3632 0.5137 -0.8901 35 1 1.7210 -1.5951 1.2332 36 1 4.1995 0.4591 -3.1292 37 1 4.0666 -1.9600 -3.8183 38 1 3.9032 -3.6422 -3.2601 39 1 2.5250 -2.5232 -3.1293 40 1 8.1223 -3.5310 -0.4325 41 1 8.1025 -2.4526 -1.8528 42 1 9.2206 -4.6751 -2.2966 43 1 7.8256 -4.3595 -3.3569 44 1 9.0896 -6.9496 -2.5721 45 1 7.6390 -6.9381 -3.6036 46 1 8.8643 -10.4037 -3.8286 47 1 5.7490 -5.4843 -2.9812 48 1 5.5873 -6.6432 -1.6391 49 1 5.7193 -4.8326 0.0023 50 1 4.4606 -4.4241 -1.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160484248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:38 Heat of formation + Delta-G solvation = -83.088415 kcal Electronic energy + Delta-G solvation = -30826.874045 eV Core-core repulsion = 26662.194369 eV Total energy + Delta-G solvation = -4164.679675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02378 -40.01678 -37.74864 -37.67829 -36.69519 -34.57103 -33.18013 -32.35431 -31.80981 -30.74450 -28.44689 -28.29640 -26.18876 -25.47028 -23.55981 -23.04153 -22.76706 -21.63738 -20.38943 -20.04791 -18.63989 -17.75547 -17.28637 -17.07372 -16.71332 -16.45564 -16.10165 -15.68499 -15.30891 -14.91584 -14.84063 -14.51787 -14.43093 -13.98839 -13.82380 -13.71568 -13.55083 -13.49488 -13.18750 -12.84215 -12.54060 -12.40461 -12.36288 -12.03870 -11.89370 -11.86119 -11.59493 -11.36596 -11.32128 -11.15867 -11.04208 -10.84512 -10.70193 -10.66294 -10.62293 -10.21353 -9.97133 -9.66897 -9.48630 -9.36648 -8.60066 -8.51232 -7.42472 -6.12475 -4.15128 2.17593 2.53243 2.88529 3.02474 3.25881 3.31372 3.32965 3.36531 3.90364 4.06290 4.20449 4.32553 4.38090 4.50411 4.56249 4.65037 4.75048 4.80835 4.88866 5.02457 5.18383 5.23489 5.29362 5.30635 5.34616 5.44186 5.45842 5.52807 5.56575 5.62904 5.66627 5.73861 5.76599 5.85291 5.94491 6.00446 6.19083 6.34945 6.35858 6.56527 6.72084 7.13575 7.16336 7.19287 7.42580 7.66352 7.93287 8.00964 8.03795 8.11319 8.39105 8.91605 9.49711 10.98223 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002469 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.304718 B =11339.996567 C =11939.548984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.131 3.869 3 H 0.103 0.897 4 O -0.553 6.553 5 C -0.182 4.182 6 H 0.130 0.870 7 C 0.527 3.473 8 O -0.518 6.518 9 N -0.718 5.718 10 C 0.157 3.843 11 H 0.107 0.893 12 C -0.120 4.120 13 H 0.111 0.889 14 C -0.141 4.141 15 C 0.521 3.479 16 O -0.550 6.550 17 N -0.604 5.604 18 C 0.118 3.882 19 C 0.041 3.959 20 N -0.535 5.535 21 C 0.194 3.806 22 C -0.512 4.512 23 H 0.063 0.937 24 C 0.056 3.944 25 N -0.897 5.897 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.276 1.276 29 H -0.277 1.277 30 C 0.050 3.950 31 C 0.106 3.894 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.378 0.622 36 H 0.423 0.577 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.032 0.968 45 H -0.009 1.009 46 H 0.263 0.737 47 H 0.024 0.976 48 H 0.098 0.902 49 H 0.078 0.922 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 15.826 6.439 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.071 3.929 3 H 0.121 0.879 4 O -0.358 6.358 5 C -0.204 4.204 6 H 0.148 0.852 7 C 0.311 3.689 8 O -0.392 6.392 9 N -0.378 5.378 10 C 0.051 3.949 11 H 0.125 0.875 12 C -0.142 4.142 13 H 0.129 0.871 14 C -0.199 4.199 15 C 0.308 3.692 16 O -0.428 6.428 17 N -0.336 5.336 18 C -0.004 4.004 19 C -0.089 4.089 20 N -0.260 5.260 21 C 0.069 3.931 22 C -0.550 4.550 23 H 0.082 0.918 24 C -0.145 4.145 25 N -0.536 5.536 26 Si 0.727 3.273 27 H -0.214 1.214 28 H -0.201 1.201 29 H -0.202 1.202 30 C -0.079 4.079 31 C -0.017 4.017 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.226 0.774 36 H 0.267 0.733 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.009 0.991 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.116 0.884 49 H 0.096 0.904 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.232 17.097 6.396 22.546 hybrid contribution -0.172 -1.476 -1.059 1.825 sum -13.404 15.621 5.337 21.265 Atomic orbital electron populations 1.22501 0.95107 1.03163 1.03596 1.21472 0.93643 0.96045 0.81727 0.87891 1.86658 1.77118 1.29483 1.42561 1.24014 0.97076 1.02167 0.97120 0.85208 1.21523 0.82517 0.80379 0.84496 1.90741 1.50384 1.46807 1.51301 1.47755 1.08110 1.50115 1.31866 1.21825 0.94230 0.89641 0.89199 0.87496 1.21665 0.93456 0.97932 1.01176 0.87110 1.21726 1.01541 1.02484 0.94154 1.20348 0.89361 0.83155 0.76314 1.90668 1.69746 1.31736 1.50650 1.48216 1.07692 1.09733 1.67954 1.21767 0.78742 0.98995 1.00916 1.22409 1.00043 0.90746 0.95653 1.62083 1.03590 1.02713 1.57636 1.19721 0.95866 0.85994 0.91471 1.21080 1.31679 0.89853 1.12418 0.91839 1.24999 0.95208 0.99291 0.95040 1.69946 1.36400 1.24947 1.22327 0.86549 0.79009 0.82197 0.79581 1.21352 1.20103 1.20238 1.22329 0.90601 0.98355 0.96629 1.22107 0.95506 0.83566 1.00549 0.91803 0.91232 0.90710 0.77386 0.73261 0.91742 0.91146 0.91512 0.90817 0.89506 0.90017 0.95628 0.95025 0.99133 0.92753 0.95745 0.88383 0.90358 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 9.54 37.16 0.35 -0.68 16 2 C 0.13 0.84 3.37 -26.73 -0.09 0.75 16 3 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 4 O -0.55 -3.53 13.11 -35.23 -0.46 -3.99 16 5 C -0.18 -1.24 2.90 -91.90 -0.27 -1.50 16 6 H 0.13 0.63 7.29 -51.93 -0.38 0.25 16 7 C 0.53 5.43 8.31 -23.40 -0.19 5.24 16 8 O -0.52 -7.25 18.03 5.56 0.10 -7.15 16 9 N -0.72 -6.90 6.26 -76.32 -0.48 -7.37 16 10 C 0.16 1.31 3.01 -80.34 -0.24 1.07 16 11 H 0.11 1.00 7.91 -51.93 -0.41 0.59 16 12 C -0.12 -1.04 1.89 -91.77 -0.17 -1.21 16 13 H 0.11 0.70 6.34 -51.93 -0.33 0.37 16 14 C -0.14 -1.24 8.22 37.16 0.31 -0.94 16 15 C 0.52 6.50 6.80 -10.99 -0.07 6.43 16 16 O -0.55 -8.40 15.72 5.55 0.09 -8.32 16 17 N -0.60 -7.91 3.01 -172.46 -0.52 -8.43 16 18 C 0.12 1.69 6.58 -3.60 -0.02 1.67 16 19 C 0.04 0.69 5.62 -3.70 -0.02 0.66 16 20 N -0.53 -10.40 4.62 -235.76 -1.09 -11.49 16 21 C 0.19 4.74 4.72 -4.97 -0.02 4.71 16 22 C -0.51 -13.41 8.41 -34.44 -0.29 -13.70 16 23 H 0.06 1.61 7.13 -52.49 -0.37 1.24 16 24 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 25 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 26 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 C 0.05 0.82 5.46 -3.70 -0.02 0.80 16 31 C 0.11 1.28 6.42 -3.60 -0.02 1.25 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.38 1.01 9.05 45.56 0.41 1.42 16 36 H 0.42 4.11 8.96 -40.82 -0.37 3.74 16 37 H 0.06 0.66 7.63 -51.93 -0.40 0.27 16 38 H 0.07 0.65 7.80 -51.93 -0.41 0.24 16 39 H 0.07 0.49 6.78 -51.93 -0.35 0.14 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.25 7.09 -51.93 -0.37 0.88 16 42 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 1.73 6.67 -51.93 -0.35 1.38 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.72 5.18 -51.93 -0.27 0.45 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -33.23 396.84 -8.89 -42.12 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.35 Total: 2.08 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.88 Total: 6.00 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -1.35 Total: -52.24 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.27 Total: -19.46 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.23 -8.89 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160484248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.964 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds