Wall clock time and date at job start Tue Mar 31 2020 23:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47133 * 2 1 4 4 O 1.42904 * 109.46737 * 119.99239 * 2 1 3 5 5 C 1.52999 * 109.47476 * 239.99272 * 2 1 3 6 6 H 1.08999 * 113.42859 * 313.65164 * 5 2 1 7 7 C 1.50566 * 114.37649 * 87.30082 * 5 2 1 8 8 O 1.21282 * 131.85174 * 293.43435 * 7 5 2 9 9 N 1.34608 * 96.30566 * 113.39450 * 7 5 2 10 10 C 1.46359 * 90.66465 * 0.02562 * 9 7 5 11 11 H 1.08999 * 113.04529 * 244.60917 * 10 9 7 12 12 C 1.53004 * 113.05304 * 115.45111 * 10 9 7 13 13 H 1.08997 * 109.47046 * 204.50339 * 12 10 9 14 14 C 1.52995 * 109.47036 * 324.50577 * 12 10 9 15 15 C 1.50704 * 109.46892 * 84.50477 * 12 10 9 16 16 O 1.21286 * 120.00133 * 335.20780 * 15 12 10 17 17 N 1.34772 * 119.99985 * 155.21787 * 15 12 10 18 18 C 1.47077 * 120.88288 * 175.21806 * 17 15 12 19 19 C 1.53241 * 108.52064 * 231.19884 * 18 17 15 20 20 N 1.46895 * 109.33855 * 306.16990 * 19 18 17 21 21 C 1.46903 * 110.99645 * 187.25103 * 20 19 18 22 22 C 1.50701 * 109.46938 * 169.99917 * 21 20 19 23 23 H 1.07998 * 120.00336 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00050 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99763 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00284 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47079 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.46816 * 299.99753 * 26 24 22 29 29 H 1.48499 * 109.47227 * 59.99388 * 26 24 22 30 30 C 1.46901 * 111.27296 * 63.10608 * 20 19 18 31 31 C 1.47081 * 120.87818 * 355.23008 * 17 15 12 32 32 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47104 * 300.00657 * 1 2 3 34 34 H 1.08998 * 109.46460 * 60.00716 * 1 2 3 35 35 H 0.96697 * 114.00383 * 60.00524 * 4 2 1 36 36 H 0.96998 * 134.67051 * 179.97438 * 9 7 5 37 37 H 1.09003 * 109.47694 * 64.97735 * 14 12 10 38 38 H 1.09004 * 109.47238 * 184.97631 * 14 12 10 39 39 H 1.09000 * 109.46997 * 304.97630 * 14 12 10 40 40 H 1.09003 * 109.63137 * 111.49061 * 18 17 15 41 41 H 1.08999 * 109.63025 * 350.91031 * 18 17 15 42 42 H 1.09006 * 109.49166 * 186.20693 * 19 18 17 43 43 H 1.08999 * 109.49018 * 66.13310 * 19 18 17 44 44 H 1.08997 * 109.47412 * 50.00437 * 21 20 19 45 45 H 1.08996 * 109.47276 * 289.99742 * 21 20 19 46 46 H 0.97005 * 119.99667 * 180.02562 * 25 24 22 47 47 H 1.08998 * 109.48732 * 56.84877 * 30 20 19 48 48 H 1.08994 * 109.49500 * 176.93623 * 30 20 19 49 49 H 1.09007 * 109.62874 * 248.50721 * 31 17 15 50 50 H 1.08990 * 109.63007 * 8.89805 * 31 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0401 -0.7214 -1.2491 6 1 1.5338 -1.6675 -1.4403 7 6 2.1864 0.1611 -2.4602 8 8 1.3688 0.7450 -3.1395 9 7 3.5283 0.0863 -2.5365 10 6 3.5633 -0.7872 -1.3626 11 1 4.0732 -0.3371 -0.5109 12 6 4.0809 -2.1923 -1.6767 13 1 3.6956 -2.8950 -0.9378 14 6 3.6101 -2.6094 -3.0713 15 6 5.5873 -2.1939 -1.6337 16 8 6.2007 -1.1658 -1.8278 17 7 6.2530 -3.3379 -1.3796 18 6 7.7220 -3.3850 -1.4358 19 6 8.1375 -4.5570 -2.3314 20 7 7.4945 -5.7876 -1.8517 21 6 7.9997 -6.9620 -2.5753 22 6 7.5097 -8.2170 -1.9002 23 1 6.8858 -8.1491 -1.0213 24 6 7.8588 -9.4521 -2.4040 25 7 8.6190 -9.5348 -3.4740 26 14 7.2509 -11.0079 -1.5676 27 1 7.7617 -12.1950 -2.2990 28 1 7.7413 -11.0404 -0.1663 29 1 5.7660 -11.0249 -1.5729 30 6 6.0315 -5.6978 -1.9503 31 6 5.5297 -4.5725 -1.0391 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8898 34 1 -0.3632 0.5137 -0.8901 35 1 1.7210 -1.5951 1.2332 36 1 4.1995 0.4591 -3.1292 37 1 4.0666 -1.9600 -3.8183 38 1 3.9032 -3.6422 -3.2601 39 1 2.5250 -2.5232 -3.1293 40 1 8.1223 -3.5310 -0.4325 41 1 8.1025 -2.4526 -1.8528 42 1 9.2206 -4.6751 -2.2966 43 1 7.8256 -4.3595 -3.3569 44 1 9.0896 -6.9496 -2.5721 45 1 7.6390 -6.9381 -3.6036 46 1 8.8643 -10.4037 -3.8286 47 1 5.7490 -5.4843 -2.9812 48 1 5.5873 -6.6432 -1.6391 49 1 5.7193 -4.8326 0.0023 50 1 4.4606 -4.4241 -1.1906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160484248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:37 Heat of formation + Delta-G solvation = -111.386031 kcal Electronic energy + Delta-G solvation = -30828.101121 eV Core-core repulsion = 26662.194369 eV Total energy + Delta-G solvation = -4165.906752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.76768 -41.07253 -39.02126 -38.30633 -37.49937 -35.98338 -34.54024 -33.76892 -32.31124 -31.93485 -29.97506 -28.98523 -27.45090 -26.56825 -24.76528 -24.19105 -23.55344 -23.01065 -21.56869 -20.66902 -19.68614 -18.64437 -18.47186 -18.03290 -17.86198 -17.51862 -16.80003 -16.69552 -16.44036 -16.28859 -15.99714 -15.68712 -15.55529 -15.29784 -14.88468 -14.82136 -14.45704 -14.29150 -14.03210 -14.01570 -13.62349 -13.51188 -13.27694 -13.01897 -12.87866 -12.77682 -12.61472 -12.57574 -12.50605 -12.39707 -12.35060 -12.18666 -12.08956 -11.79849 -11.74838 -11.29050 -11.28187 -10.91821 -10.67137 -10.59382 -10.28783 -9.74421 -9.04732 -8.18648 -6.29241 1.39653 1.45645 1.48496 1.55582 1.56156 1.92513 2.27941 2.42716 2.70278 3.14086 3.19578 3.26063 3.39702 3.68118 3.73898 3.86407 3.93446 4.00848 4.04839 4.12430 4.20184 4.24999 4.31352 4.35288 4.46238 4.51379 4.58938 4.70744 4.76324 4.77165 4.86415 4.90831 4.95546 4.97392 5.03265 5.14949 5.16920 5.22439 5.25675 5.29762 5.34282 5.45852 5.65310 5.93710 6.03632 6.24639 6.45313 6.57049 6.87029 6.94282 7.10114 7.22778 7.41165 8.92465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002469 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.304718 B =11339.996567 C =11939.548984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 H 0.086 0.914 4 O -0.563 6.563 5 C -0.155 4.155 6 H 0.162 0.838 7 C 0.519 3.481 8 O -0.562 6.562 9 N -0.723 5.723 10 C 0.159 3.841 11 H 0.100 0.900 12 C -0.110 4.110 13 H 0.149 0.851 14 C -0.140 4.140 15 C 0.518 3.482 16 O -0.580 6.580 17 N -0.608 5.608 18 C 0.128 3.872 19 C 0.044 3.956 20 N -0.538 5.538 21 C 0.209 3.791 22 C -0.520 4.520 23 H 0.073 0.927 24 C 0.000 4.000 25 N -0.938 5.938 26 Si 0.970 3.030 27 H -0.290 1.290 28 H -0.268 1.268 29 H -0.261 1.261 30 C 0.048 3.952 31 C 0.116 3.884 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.418 0.582 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.013 0.987 44 H 0.001 0.999 45 H -0.042 1.042 46 H 0.263 0.737 47 H 0.015 0.985 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.126 15.062 8.817 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.076 3.924 3 H 0.104 0.896 4 O -0.371 6.371 5 C -0.177 4.177 6 H 0.180 0.820 7 C 0.305 3.695 8 O -0.439 6.439 9 N -0.381 5.381 10 C 0.053 3.947 11 H 0.118 0.882 12 C -0.132 4.132 13 H 0.167 0.833 14 C -0.197 4.197 15 C 0.308 3.692 16 O -0.460 6.460 17 N -0.340 5.340 18 C 0.005 3.995 19 C -0.085 4.085 20 N -0.263 5.263 21 C 0.082 3.918 22 C -0.558 4.558 23 H 0.091 0.909 24 C -0.198 4.198 25 N -0.579 5.579 26 Si 0.795 3.205 27 H -0.216 1.216 28 H -0.192 1.192 29 H -0.186 1.186 30 C -0.081 4.081 31 C -0.006 4.006 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.031 0.969 44 H 0.019 0.981 45 H -0.025 1.025 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.106 0.894 49 H 0.108 0.892 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.705 16.332 8.810 24.311 hybrid contribution 0.670 -1.168 -1.837 2.277 sum -15.035 15.164 6.973 22.464 Atomic orbital electron populations 1.22459 0.94260 1.04361 1.02877 1.21331 0.94118 0.95334 0.81596 0.89630 1.86645 1.77315 1.31086 1.42033 1.24045 0.95888 1.02453 0.95301 0.82019 1.22180 0.82179 0.80166 0.84988 1.90716 1.51458 1.48704 1.53063 1.47965 1.08084 1.50028 1.32014 1.21858 0.95348 0.89167 0.88328 0.88188 1.21716 0.90325 0.98933 1.02193 0.83347 1.21722 1.02697 1.01813 0.93490 1.21030 0.90934 0.82262 0.75020 1.90663 1.70819 1.32849 1.51698 1.48295 1.07085 1.10469 1.68142 1.21555 0.80171 0.97332 1.00456 1.22419 0.99754 0.90706 0.95655 1.62013 1.05777 1.02007 1.56513 1.19359 0.93969 0.88205 0.90218 1.21431 1.31355 0.90513 1.12490 0.90902 1.25955 0.95296 1.02990 0.95595 1.70098 1.37965 1.25707 1.24097 0.85417 0.79130 0.77514 0.78459 1.21620 1.19247 1.18604 1.22410 0.88369 0.99957 0.97370 1.22139 0.97461 0.81237 0.99727 0.89663 0.91119 0.92274 0.75248 0.73841 0.93836 0.91275 0.89425 0.90046 0.89586 0.90529 0.96914 0.98103 1.02451 0.92823 0.96673 0.89373 0.89245 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.54 71.98 0.69 -0.86 16 2 C 0.14 1.40 3.37 30.60 0.10 1.50 16 3 H 0.09 1.18 8.03 -2.39 -0.02 1.16 16 4 O -0.56 -5.17 13.11 -148.98 -1.95 -7.12 16 5 C -0.16 -1.63 2.90 -11.62 -0.03 -1.66 16 6 H 0.16 0.71 7.29 -2.39 -0.02 0.69 16 7 C 0.52 10.09 8.31 79.69 0.66 10.75 16 8 O -0.56 -15.63 18.03 -3.04 -0.05 -15.69 16 9 N -0.72 -13.24 6.26 -513.85 -3.22 -16.46 16 10 C 0.16 2.25 3.01 37.03 0.11 2.36 16 11 H 0.10 1.65 7.91 -2.39 -0.02 1.63 16 12 C -0.11 -1.51 1.89 -11.54 -0.02 -1.53 16 13 H 0.15 0.95 6.34 -2.39 -0.02 0.94 16 14 C -0.14 -2.04 8.22 71.98 0.59 -1.45 16 15 C 0.52 11.76 6.80 87.66 0.60 12.36 16 16 O -0.58 -17.12 15.72 -3.05 -0.05 -17.17 16 17 N -0.61 -14.54 3.01 -817.93 -2.46 -17.01 16 18 C 0.13 3.55 6.58 86.35 0.57 4.12 16 19 C 0.04 1.50 5.62 86.38 0.49 1.98 16 20 N -0.54 -21.03 4.62 -899.82 -4.16 -25.19 16 21 C 0.21 10.55 4.72 85.56 0.40 10.95 16 22 C -0.52 -27.38 8.41 25.60 0.22 -27.16 16 23 H 0.07 3.63 7.13 -2.91 -0.02 3.60 16 24 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 25 N -0.94 -54.94 13.29 21.45 0.28 -54.65 16 26 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 27 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 30 C 0.05 1.51 5.46 86.38 0.47 1.98 16 31 C 0.12 2.42 6.42 86.35 0.55 2.97 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.40 0.20 9.05 -74.06 -0.67 -0.47 16 36 H 0.42 8.18 8.96 -92.71 -0.83 7.35 16 37 H 0.04 0.83 7.63 -2.39 -0.02 0.82 16 38 H 0.07 1.06 7.80 -2.39 -0.02 1.04 16 39 H 0.09 0.94 6.78 -2.39 -0.02 0.93 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.43 7.09 -2.39 -0.02 2.41 16 42 H 0.08 2.64 7.99 -2.38 -0.02 2.62 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.00 0.05 7.97 -2.39 -0.02 0.03 16 45 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 46 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 47 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.09 2.97 6.67 -2.39 -0.02 2.95 16 49 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.12 1.52 5.18 -2.39 -0.01 1.51 16 Total: -1.00 -75.50 396.84 -4.26 -79.76 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -0.53 Total: 13.08 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 5.86 Total: 16.74 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -9.55 Total: -113.31 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.06 Total: -39.97 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -75.50 -4.26 -79.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160484248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.631 kcal (2) G-P(sol) polarization free energy of solvation -75.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds