Wall clock time and date at job start Tue Mar 31 2020 22:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35707 * 117.00136 * 2 1 4 4 C 1.41934 * 126.87980 * 180.29542 * 3 2 1 5 5 C 1.35271 * 103.95912 * 180.11776 * 4 3 2 6 6 C 1.50700 * 126.70974 * 179.88064 * 5 4 3 7 7 C 1.52992 * 109.47257 * 89.71217 * 6 5 4 8 8 C 1.50700 * 109.47257 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47706 * 34.99696 * 11 10 8 13 13 C 1.53005 * 109.47118 * 274.99773 * 11 10 8 14 14 C 1.53004 * 109.46982 * 155.00372 * 11 10 8 15 15 C 1.52999 * 109.46735 * 294.99676 * 14 11 10 16 16 C 1.52999 * 109.47222 * 180.02562 * 15 14 11 17 17 C 1.52998 * 109.47594 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47537 * 179.97438 * 17 16 15 19 19 C 1.36936 * 120.00043 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99601 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99728 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99608 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47126 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46973 * 119.99874 * 23 21 19 26 26 H 1.48502 * 109.46693 * 239.99458 * 23 21 19 27 27 O 1.34085 * 106.58503 * 359.62002 * 5 4 3 28 28 N 1.20921 * 111.71409 * 0.26189 * 27 5 4 29 29 H 1.08997 * 109.47508 * 299.99959 * 1 2 3 30 30 H 1.09003 * 109.46856 * 60.00290 * 1 2 3 31 31 H 1.09007 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08002 * 128.02084 * 0.03401 * 4 3 2 33 33 H 1.09004 * 109.46932 * 329.70996 * 6 5 4 34 34 H 1.09005 * 109.47238 * 209.71374 * 6 5 4 35 35 H 1.09004 * 109.47330 * 60.00023 * 7 6 5 36 36 H 1.08997 * 109.47279 * 300.00509 * 7 6 5 37 37 H 0.96995 * 120.00015 * 359.72695 * 10 8 7 38 38 H 1.08996 * 109.47503 * 300.00392 * 13 11 10 39 39 H 1.08997 * 109.47041 * 60.00616 * 13 11 10 40 40 H 1.09005 * 109.46855 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47373 * 54.99720 * 14 11 10 42 42 H 1.09001 * 109.47302 * 175.00215 * 14 11 10 43 43 H 1.09002 * 109.47226 * 300.00134 * 15 14 11 44 44 H 1.09002 * 109.47308 * 60.00186 * 15 14 11 45 45 H 1.09002 * 109.47060 * 300.00151 * 16 15 14 46 46 H 1.09002 * 109.46897 * 59.99849 * 16 15 14 47 47 H 1.09002 * 109.47056 * 300.00173 * 17 16 15 48 48 H 1.09002 * 109.47106 * 59.99997 * 17 16 15 49 49 H 0.97005 * 119.99355 * 0.02562 * 18 17 16 50 50 H 0.97000 * 119.99616 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4527 -0.0059 5 6 3.5397 2.8019 -0.0004 6 6 4.8088 3.6145 -0.0007 7 6 5.2381 3.8895 -1.4431 8 6 6.5070 4.7026 -1.4434 9 8 7.0179 5.0295 -0.3931 10 7 7.0740 5.0664 -2.6107 11 6 8.3077 5.8564 -2.6108 12 1 8.9319 5.5556 -1.7694 13 6 7.9624 7.3416 -2.4844 14 6 9.0654 5.6186 -3.9187 15 6 9.5193 4.1591 -3.9869 16 6 10.2775 3.9214 -5.2944 17 6 10.7319 2.4620 -5.3624 18 7 11.4574 2.2343 -6.6147 19 6 11.9620 0.9931 -6.8976 20 1 11.8255 0.1823 -6.1974 21 6 12.6498 0.7775 -8.0839 22 7 12.8166 1.7659 -8.9369 23 14 13.3388 -0.9155 -8.4696 24 1 13.0189 -1.8453 -7.3568 25 1 12.7334 -1.4214 -9.7276 26 1 14.8123 -0.8252 -8.6307 27 8 2.2851 3.2751 -0.0007 28 7 1.4700 2.3819 -0.0004 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2447 0.7286 -0.0117 33 1 5.5948 3.0608 0.5131 34 1 4.6351 4.5600 0.5132 35 1 4.4522 4.4431 -1.9569 36 1 5.4119 2.9441 -1.9570 37 1 6.6676 4.8016 -3.4506 38 1 7.3382 7.6424 -3.3257 39 1 7.4227 7.5110 -1.5527 40 1 8.8804 7.9293 -2.4849 41 1 8.4104 5.8353 -4.7626 42 1 9.9368 6.2722 -3.9578 43 1 10.1742 3.9424 -3.1430 44 1 8.6479 3.5054 -3.9478 45 1 9.6229 4.1382 -6.1386 46 1 11.1488 4.5751 -5.3331 47 1 11.3867 2.2456 -4.5182 48 1 9.8608 1.8080 -5.3236 49 1 11.5803 2.9628 -7.2433 50 1 13.2969 1.6150 -9.7660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171021674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:11 Heat of formation + Delta-G solvation = -50.406653 kcal Electronic energy + Delta-G solvation = -28028.717430 eV Core-core repulsion = 23865.454942 eV Total energy + Delta-G solvation = -4163.262488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.95925 -40.86364 -39.85983 -38.08124 -36.84171 -35.65792 -34.73326 -33.88486 -32.99387 -31.93978 -30.92189 -28.78738 -28.55353 -26.23960 -25.76069 -24.46082 -23.66217 -22.28875 -22.00344 -21.66456 -21.28385 -19.12112 -19.07211 -18.73380 -17.88596 -17.73266 -17.20487 -16.69315 -16.56394 -16.48672 -16.20090 -16.02658 -15.41751 -15.30794 -15.09130 -14.91543 -14.60008 -14.46708 -14.07595 -13.95161 -13.71747 -13.25628 -13.20336 -13.09935 -12.94884 -12.88980 -12.85777 -12.82503 -12.44171 -12.41303 -12.23131 -12.10104 -11.90265 -11.86658 -11.76737 -11.45456 -11.35020 -10.94148 -10.88839 -10.51081 -10.29298 -9.97235 -9.00486 -7.96371 -5.25317 0.36671 1.20284 1.47204 1.48124 1.58418 1.73889 1.76103 2.04477 2.42973 2.55602 3.17350 3.37276 3.62850 3.71900 3.87026 3.92001 4.05200 4.09953 4.11107 4.17494 4.21694 4.23982 4.29904 4.40422 4.44497 4.48937 4.59087 4.63827 4.66867 4.68757 4.83826 4.85398 4.91477 4.97510 4.98682 5.03211 5.06477 5.11119 5.18628 5.30845 5.37681 5.47656 5.49157 5.56310 5.68050 5.93544 6.26886 6.66210 7.18723 7.32520 7.35899 8.09797 8.32624 9.27433 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.001788 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.791903 B =15657.528129 C =18448.258566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.298 6.298 3 C 0.193 3.807 4 C -0.236 4.236 5 C 0.011 3.989 6 C -0.019 4.019 7 C -0.134 4.134 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.715 5.715 11 C 0.144 3.856 12 H 0.069 0.931 13 C -0.158 4.158 14 C -0.118 4.118 15 C -0.104 4.104 16 C -0.113 4.113 17 C 0.147 3.853 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.266 1.266 25 H -0.291 1.291 26 H -0.292 1.292 27 O 0.091 5.909 28 N -0.432 5.432 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.198 0.802 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.414 0.586 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.013 0.987 48 H 0.019 0.981 49 H 0.374 0.626 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 6.690 19.309 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.205 6.205 3 C -0.004 4.004 4 C -0.257 4.257 5 C -0.052 4.052 6 C -0.058 4.058 7 C -0.174 4.174 8 C 0.303 3.697 9 O -0.462 6.462 10 N -0.367 5.367 11 C 0.040 3.960 12 H 0.087 0.913 13 C -0.216 4.216 14 C -0.156 4.156 15 C -0.142 4.142 16 C -0.151 4.151 17 C 0.021 3.979 18 N -0.392 5.392 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.804 3.196 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.219 1.219 27 O 0.032 5.968 28 N -0.160 5.160 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.215 0.785 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.037 0.963 49 H 0.205 0.795 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.734 6.857 20.100 32.601 hybrid contribution 0.820 -1.203 -1.024 1.780 sum -23.914 5.654 19.076 31.108 Atomic orbital electron populations 1.23291 0.75405 1.05921 1.02169 1.86189 1.24131 1.20855 1.89282 1.22409 0.91910 0.85819 1.00291 1.22165 0.94104 0.96374 1.13096 1.24523 0.87979 0.93192 0.99526 1.19929 0.87898 1.00300 0.97649 1.21667 0.95297 1.02468 0.97925 1.20885 0.86128 0.79287 0.83376 1.90712 1.65431 1.57458 1.32594 1.46088 1.26807 1.54769 1.09067 1.20913 0.85444 0.91240 0.98449 0.91306 1.22114 1.02540 0.95057 1.01872 1.21844 1.00761 0.96327 0.96623 1.21421 0.99782 0.97107 0.95886 1.21611 0.99946 0.94815 0.98753 1.20874 0.93625 0.95988 0.87388 1.42648 1.66136 1.09781 1.20641 1.19708 1.27016 0.89420 1.01911 0.90772 1.25604 1.02519 1.01473 0.97341 1.69821 1.48227 1.32545 1.11410 0.85053 0.77367 0.79511 0.77709 1.19076 1.21804 1.21940 1.84773 1.12915 1.29969 1.69157 1.74132 1.16380 0.97172 1.28317 0.92390 0.92400 0.84941 0.78485 0.86945 0.88255 0.86345 0.86292 0.74943 0.91323 0.93567 0.90974 0.89920 0.89966 0.92604 0.91195 0.91947 0.92651 0.96890 0.96264 0.79461 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.73 113.37 1.22 1.53 16 2 O -0.30 -5.46 10.57 -90.28 -0.95 -6.41 16 3 C 0.19 3.73 8.01 85.79 0.69 4.42 16 4 C -0.24 -3.47 11.11 22.50 0.25 -3.22 16 5 C 0.01 0.15 6.73 25.00 0.17 0.32 16 6 C -0.02 -0.20 5.07 29.85 0.15 -0.05 16 7 C -0.13 -1.13 5.68 29.85 0.17 -0.96 16 8 C 0.52 7.76 7.79 87.66 0.68 8.45 16 9 O -0.58 -13.51 15.64 -3.03 -0.05 -13.56 16 10 N -0.72 -9.14 4.53 -442.53 -2.01 -11.14 16 11 C 0.14 2.24 2.57 45.00 0.12 2.35 16 12 H 0.07 1.39 7.58 -2.39 -0.02 1.37 16 13 C -0.16 -2.22 9.48 71.98 0.68 -1.54 16 14 C -0.12 -1.83 4.75 30.60 0.15 -1.68 16 15 C -0.10 -2.18 5.10 30.59 0.16 -2.02 16 16 C -0.11 -3.32 5.33 30.59 0.16 -3.16 16 17 C 0.15 5.83 6.26 86.38 0.54 6.37 16 18 N -0.75 -38.69 5.60 -343.45 -1.92 -40.61 16 19 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 22 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 23 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 O 0.09 1.63 11.19 71.20 0.80 2.43 16 28 N -0.43 -8.91 11.54 -172.58 -1.99 -10.90 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.11 1.14 8.10 -2.38 -0.02 1.12 16 34 H 0.10 1.07 8.10 -2.38 -0.02 1.05 16 35 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.41 3.35 8.60 -92.71 -0.80 2.56 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.34 7.75 -2.39 -0.02 1.33 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.37 20.34 7.67 -92.70 -0.71 19.62 16 50 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -75.72 421.24 2.05 -73.67 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.57 Total: 24.05 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.44 Total: -6.50 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.64 Total: -121.96 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.20 Total: -17.55 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.72 2.05 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171021674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.263 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds