Wall clock time and date at job start Tue Mar 31 2020 22:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35707 * 117.00042 * 2 1 4 4 C 1.41929 * 126.87947 * 180.30133 * 3 2 1 5 5 C 1.35269 * 103.96219 * 180.11427 * 4 3 2 6 6 C 1.50700 * 126.71230 * 179.87503 * 5 4 3 7 7 C 1.53005 * 109.46769 * 89.71508 * 6 5 4 8 8 C 1.50700 * 109.46769 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00339 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99836 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00226 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47414 * 325.00262 * 11 10 8 13 13 C 1.53001 * 109.47372 * 85.00029 * 11 10 8 14 14 C 1.52996 * 109.47485 * 205.00306 * 11 10 8 15 15 C 1.52997 * 109.47131 * 64.99753 * 14 11 10 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.46953 * 179.97438 * 17 16 15 19 19 C 1.36942 * 120.00106 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99638 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00269 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00146 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47144 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47391 * 120.00172 * 23 21 19 26 26 H 1.48500 * 109.47521 * 240.00541 * 23 21 19 27 27 O 1.34088 * 106.57989 * 359.62075 * 5 4 3 28 28 N 1.20912 * 111.71477 * 0.25323 * 27 5 4 29 29 H 1.09000 * 109.47388 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47447 * 299.99452 * 1 2 3 31 31 H 1.09001 * 109.47601 * 60.00241 * 1 2 3 32 32 H 1.08002 * 128.02289 * 0.02668 * 4 3 2 33 33 H 1.09000 * 109.47305 * 329.71603 * 6 5 4 34 34 H 1.09003 * 109.47247 * 209.71597 * 6 5 4 35 35 H 1.09000 * 109.47129 * 59.99988 * 7 6 5 36 36 H 1.08993 * 109.47323 * 299.99902 * 7 6 5 37 37 H 0.97003 * 119.99985 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.47124 * 60.00031 * 13 11 10 39 39 H 1.08997 * 109.47849 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.47074 * 300.00417 * 13 11 10 41 41 H 1.09001 * 109.46993 * 304.99622 * 14 11 10 42 42 H 1.09004 * 109.47298 * 185.00036 * 14 11 10 43 43 H 1.09001 * 109.46832 * 60.00325 * 15 14 11 44 44 H 1.08993 * 109.47194 * 299.99846 * 15 14 11 45 45 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 46 46 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 47 47 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 48 48 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 49 49 H 0.96999 * 120.00356 * 0.02562 * 18 17 16 50 50 H 0.97000 * 120.00516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4527 -0.0060 5 6 3.5396 2.8019 -0.0006 6 6 4.8088 3.6145 -0.0008 7 6 5.2380 3.8894 -1.4434 8 6 6.5068 4.7025 -1.4437 9 8 7.0178 5.0295 -0.3934 10 7 7.0743 5.0655 -2.6110 11 6 8.3074 5.8564 -2.6113 12 1 8.2949 6.5494 -1.7699 13 6 9.5126 4.9223 -2.4846 14 6 8.4079 6.6440 -3.9191 15 6 7.2715 7.6661 -3.9875 16 6 7.3716 8.4534 -5.2956 17 6 6.2356 9.4759 -5.3638 18 7 6.3319 10.2301 -6.6160 19 6 5.4150 11.2070 -6.8992 20 1 4.6212 11.4218 -6.1990 21 6 5.5065 11.9220 -8.0854 22 7 6.4741 11.6606 -8.9384 23 14 4.2562 13.2551 -8.4713 24 1 3.2776 13.3531 -7.3586 25 1 4.9536 14.5562 -8.6324 26 1 3.5436 12.9164 -9.7293 27 8 2.2850 3.2751 -0.0007 28 7 1.4700 2.3819 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.2446 0.7286 -0.0119 33 1 5.5948 3.0609 0.5129 34 1 4.6350 4.5599 0.5131 35 1 4.4520 4.4430 -1.9571 36 1 5.4118 2.9441 -1.9573 37 1 6.6659 4.8037 -3.4510 38 1 9.5252 4.2293 -3.3260 39 1 10.4301 5.5107 -2.4844 40 1 9.4410 4.3612 -1.5529 41 1 8.3313 5.9584 -4.7629 42 1 9.3659 7.1626 -3.9583 43 1 7.3483 8.3518 -3.1436 44 1 6.3136 7.1476 -3.9484 45 1 8.3296 8.9719 -5.3352 46 1 7.2947 7.7674 -6.1393 47 1 5.2775 8.9577 -5.3239 48 1 6.3131 10.1618 -4.5201 49 1 7.0446 10.0369 -7.2450 50 1 6.5379 12.1599 -9.7675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171021676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:15 Heat of formation + Delta-G solvation = -25.447365 kcal Electronic energy + Delta-G solvation = -28008.286858 eV Core-core repulsion = 23846.106687 eV Total energy + Delta-G solvation = -4162.180172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.29199 -40.19088 -39.24497 -37.17396 -35.37896 -35.00867 -33.32028 -33.20885 -31.80163 -30.72004 -30.08285 -28.04836 -27.46373 -25.58409 -24.17190 -23.79708 -22.27002 -21.57026 -20.94372 -20.71281 -20.61623 -18.45673 -18.08207 -17.25303 -17.11462 -17.00320 -16.48507 -16.02396 -15.88901 -15.45833 -15.05884 -14.73152 -14.51373 -14.27604 -14.09299 -13.84954 -13.54562 -13.23991 -13.09956 -12.94521 -12.85596 -12.73585 -12.62925 -12.37125 -12.30162 -11.87773 -11.78580 -11.47773 -11.35818 -11.27743 -11.01068 -10.82225 -10.71947 -10.41198 -10.32202 -10.21647 -9.96486 -9.90336 -9.66823 -9.62275 -9.28355 -8.85713 -6.89587 -5.75059 -3.03386 0.97820 1.85463 2.33012 2.37120 2.61650 3.01194 3.44266 3.49902 3.52233 3.79167 4.22772 4.37032 4.47098 4.50319 4.57035 4.64234 4.66528 4.68972 4.75181 4.88884 4.96033 4.97074 5.01647 5.06698 5.23272 5.32136 5.38427 5.42066 5.43531 5.54666 5.56460 5.60508 5.67816 5.77156 5.87361 5.93364 6.08310 6.20401 6.29904 6.35463 6.38537 6.46300 6.53863 6.89816 6.93739 7.24027 7.72237 7.83802 7.95668 8.44387 9.55231 10.14491 10.48911 11.48100 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.001727 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.446475 B =16207.684045 C =18654.018180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.233 4.233 5 C 0.000 4.000 6 C -0.025 4.025 7 C -0.142 4.142 8 C 0.517 3.483 9 O -0.542 6.542 10 N -0.721 5.721 11 C 0.140 3.860 12 H 0.089 0.911 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 O 0.103 5.897 28 N -0.409 5.409 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.179 0.821 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.402 0.598 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -26.296 19.182 32.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.255 4.255 5 C -0.063 4.063 6 C -0.064 4.064 7 C -0.182 4.182 8 C 0.303 3.697 9 O -0.419 6.419 10 N -0.373 5.373 11 C 0.036 3.964 12 H 0.107 0.893 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 O 0.042 5.958 28 N -0.135 5.135 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.236 0.764 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.760 -25.825 19.959 32.756 hybrid contribution -0.293 0.071 -1.030 1.073 sum -3.052 -25.754 18.929 32.107 Atomic orbital electron populations 1.23078 0.76720 1.04145 1.02447 1.86186 1.22678 1.20930 1.89368 1.22040 0.90966 0.85739 1.00327 1.21808 0.94306 0.95700 1.13646 1.24342 0.88370 0.93205 1.00413 1.19929 0.88624 1.00684 0.97126 1.21683 0.96673 1.01822 0.98022 1.20424 0.85471 0.79883 0.83917 1.90724 1.64489 1.55483 1.31205 1.46123 1.27176 1.55407 1.08577 1.21059 0.83188 0.92619 0.99550 0.89266 1.22173 0.97813 1.00047 1.02077 1.21945 1.00542 0.98083 0.95969 1.21519 0.97867 0.97293 0.98519 1.21730 1.00015 0.98114 0.96514 1.20650 0.94952 0.92016 0.89930 1.42395 1.34602 1.41874 1.19025 1.19310 1.05696 1.10064 1.01889 0.91153 1.24745 0.98848 1.00367 0.97219 1.69669 1.33583 1.44056 1.11043 0.86111 0.80591 0.81678 0.77808 1.20549 1.21859 1.21878 1.84833 1.12232 1.29974 1.68750 1.74166 1.15651 0.96722 1.26994 0.87610 0.92234 0.92147 0.80399 0.87332 0.87965 0.87852 0.88160 0.76356 0.92506 0.91517 0.92281 0.91344 0.90209 0.91966 0.92120 0.92063 0.92145 0.96628 0.96559 0.78364 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.73 101.05 1.08 1.27 16 2 O -0.29 -2.58 10.57 -18.83 -0.20 -2.78 16 3 C 0.21 2.01 8.01 -16.66 -0.13 1.88 16 4 C -0.23 -1.74 11.10 -39.23 -0.44 -2.17 16 5 C 0.00 0.00 6.73 -35.37 -0.24 -0.23 16 6 C -0.03 -0.15 5.07 -27.88 -0.14 -0.29 16 7 C -0.14 -0.76 5.68 -27.88 -0.16 -0.92 16 8 C 0.52 4.31 7.79 -10.98 -0.09 4.22 16 9 O -0.54 -6.47 15.65 5.56 0.09 -6.38 16 10 N -0.72 -5.36 4.53 -53.81 -0.24 -5.60 16 11 C 0.14 1.20 2.57 -67.94 -0.17 1.03 16 12 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 13 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 14 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 15 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 16 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 17 C 0.15 3.09 6.26 -4.05 -0.03 3.07 16 18 N -0.74 -19.09 5.60 -59.91 -0.34 -19.42 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 O 0.10 1.00 11.19 17.05 0.19 1.19 16 28 N -0.41 -4.40 11.54 30.38 0.35 -4.05 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.11 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 2.21 8.60 -40.82 -0.35 1.86 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.37 7.67 -40.82 -0.31 10.05 16 50 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 421.24 15.07 6.35 6.35 Total: -1.00 -35.35 421.24 -7.32 -42.67 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.61 Total: 3.67 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.61 Total: -5.42 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.50 Total: -56.96 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.08 Total: -7.97 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.35 -7.32 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171021676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.226 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds