Wall clock time and date at job start Tue Mar 31 2020 22:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 C 1.52995 * 109.47551 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47710 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47625 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00587 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99572 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00512 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99889 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47237 * 90.00239 * 13 11 9 15 15 H 1.48503 * 109.47163 * 210.00431 * 13 11 9 16 16 H 1.48502 * 109.47066 * 329.99983 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 22 22 C 1.53002 * 109.47419 * 59.99803 * 20 18 17 23 23 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 24 24 C 1.33879 * 122.76486 * 299.70684 * 23 20 18 25 25 O 1.21225 * 125.39168 * 359.97438 * 24 23 20 26 26 C 1.51312 * 109.20501 * 179.84209 * 24 23 20 27 27 C 1.54230 * 103.56009 * 0.38819 * 26 24 23 28 28 C 1.33881 * 122.75931 * 120.00055 * 23 20 18 29 29 O 1.21224 * 125.39848 * 0.02562 * 28 23 20 30 30 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 32 32 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 33 33 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 34 34 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 35 35 H 1.09002 * 109.47285 * 299.99610 * 5 4 2 36 36 H 1.09000 * 109.47465 * 59.99400 * 5 4 2 37 37 H 1.09008 * 109.47326 * 300.00107 * 6 5 4 38 38 H 1.09000 * 109.47087 * 59.99338 * 6 5 4 39 39 H 1.09007 * 109.46548 * 299.99761 * 7 6 5 40 40 H 1.08995 * 109.47272 * 59.99043 * 7 6 5 41 41 H 0.97004 * 119.99565 * 359.97438 * 8 7 6 42 42 H 0.96995 * 119.99890 * 179.97438 * 12 11 9 43 43 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 44 44 H 1.09002 * 109.47075 * 59.99368 * 22 20 18 45 45 H 1.08996 * 109.47407 * 180.02562 * 22 20 18 46 46 H 1.09000 * 109.46986 * 300.00096 * 22 20 18 47 47 H 1.09000 * 110.79948 * 241.78084 * 26 24 23 48 48 H 1.08997 * 110.54759 * 118.87826 * 26 24 23 49 49 H 1.09000 * 110.60860 * 241.26309 * 27 26 24 50 50 H 1.08994 * 110.73920 * 118.35523 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5628 7 6 5.5997 -1.2275 -2.6270 8 7 6.0880 -1.9179 -3.8232 9 6 7.4300 -1.9543 -4.0929 10 1 8.1285 -1.4736 -3.4239 11 6 7.8928 -2.6090 -5.2261 12 7 9.1827 -2.6443 -5.4851 13 14 6.6848 -3.4410 -6.3827 14 1 6.2490 -2.4745 -7.4223 15 1 7.3419 -4.6037 -7.0321 16 1 5.5031 -3.9066 -5.6131 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 1 1.9778 -1.5511 3.8324 22 6 4.0528 -1.2787 3.3212 23 7 2.6997 0.2126 4.7087 24 6 3.4518 1.3201 4.6922 25 8 4.1639 1.6716 3.7764 26 6 3.2694 2.0650 5.9966 27 6 2.2788 1.1817 6.7821 28 6 2.0011 0.0332 5.8367 29 8 1.2635 -0.9013 6.0647 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.8532 0.4371 -1.3574 36 1 3.9994 -1.0727 -0.4261 37 1 3.7865 -2.3851 -2.5188 38 1 3.6401 -0.8757 -3.4507 39 1 5.8884 -0.1772 -2.6708 40 1 6.0340 -1.6868 -1.7390 41 1 5.4606 -2.3493 -4.4242 42 1 9.5061 -3.1021 -6.2767 43 1 2.2490 -1.6318 1.1524 44 1 4.7249 -0.4563 3.0761 45 1 4.4163 -1.7928 4.2108 46 1 4.0162 -1.9790 2.4867 47 1 2.8459 3.0540 5.8216 48 1 4.2178 2.1437 6.5280 49 1 1.3624 1.7312 6.9977 50 1 2.7328 0.8184 7.7040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171117508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:31 Heat of formation + Delta-G solvation = -101.818539 kcal Electronic energy + Delta-G solvation = -29818.183285 eV Core-core repulsion = 25652.691411 eV Total energy + Delta-G solvation = -4165.491874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47449 -40.03607 -38.89916 -37.14910 -36.19359 -35.44709 -34.80266 -33.33463 -31.87114 -30.88352 -30.05576 -27.78393 -26.60431 -25.36062 -24.21230 -22.87964 -22.29168 -21.42052 -20.92729 -20.76012 -19.64106 -18.07373 -17.64598 -17.48276 -17.09807 -16.64953 -16.23376 -15.38836 -15.30127 -14.88242 -14.64363 -14.58862 -14.50564 -14.31360 -14.18374 -14.09667 -13.60867 -13.48468 -13.39982 -13.05845 -12.86581 -12.82440 -12.67733 -12.49254 -12.28343 -11.92666 -11.84592 -11.67333 -11.47983 -11.17853 -10.94354 -10.88692 -10.84068 -10.66619 -10.41310 -10.34038 -10.33947 -10.09735 -9.84123 -9.57258 -9.34512 -8.87236 -7.20482 -5.74833 -3.10020 1.15530 1.89159 2.26700 2.30331 2.89668 3.37990 3.40788 3.45645 3.61278 3.76450 3.95121 4.19595 4.32315 4.45098 4.47890 4.49009 4.60647 4.74983 4.83512 4.89421 4.94703 5.08750 5.12417 5.16777 5.20012 5.29198 5.30255 5.33548 5.48155 5.53171 5.57510 5.64431 5.68338 5.79171 5.85085 6.00532 6.07016 6.11984 6.18618 6.28057 6.37103 6.39590 6.79128 6.82833 6.91658 7.12521 7.40060 7.86588 8.02331 8.44546 9.23969 9.96425 10.16778 11.43764 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002080 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.778147 B =13455.945396 C =14334.249595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.525 6.525 20 C 0.108 3.892 21 H 0.129 0.871 22 C -0.165 4.165 23 N -0.560 5.560 24 C 0.531 3.469 25 O -0.460 6.460 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.530 3.470 29 O -0.488 6.488 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.401 0.599 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.995 6.524 26.805 34.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.368 5.368 18 C 0.296 3.704 19 O -0.400 6.400 20 C 0.002 3.998 21 H 0.147 0.853 22 C -0.223 4.223 23 N -0.303 5.303 24 C 0.319 3.681 25 O -0.329 6.329 26 C -0.195 4.195 27 C -0.194 4.194 28 C 0.319 3.681 29 O -0.360 6.360 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.236 0.764 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.954 7.112 26.450 33.888 hybrid contribution -0.680 -1.194 -1.036 1.720 sum -20.634 5.919 25.415 33.267 Atomic orbital electron populations 1.22173 0.95293 1.02119 1.02509 1.21071 0.93724 0.97835 0.83565 0.89177 1.21941 0.96904 1.00911 0.96703 1.21511 0.93898 1.01338 0.98500 1.21777 0.97312 1.00233 0.97395 1.20626 0.90746 0.95744 0.89966 1.42740 1.05276 1.66134 1.26225 1.19089 0.82329 1.29175 1.06706 0.89272 1.24695 0.95652 1.00781 0.98307 1.69707 1.11701 1.48354 1.28595 0.86510 0.80861 0.79444 0.81490 1.21088 1.21729 1.20396 1.45977 1.67321 1.14126 1.09411 1.20407 0.77814 0.87509 0.84649 1.90719 1.49257 1.15410 1.84619 1.21254 1.01245 0.92170 0.85147 0.85320 1.22157 0.93745 1.02722 1.03670 1.46513 1.42830 1.24249 1.16741 1.20709 0.78025 0.79951 0.89409 1.90799 1.35965 1.67569 1.38570 1.22456 1.02585 1.00985 0.93499 1.22454 1.02611 0.95037 0.99264 1.20881 0.77750 0.87174 0.82296 1.90781 1.34636 1.33225 1.77310 0.92419 0.92379 0.91411 0.91310 0.90133 0.91718 0.91954 0.92194 0.92098 0.95670 0.95790 0.80754 0.93094 0.76378 0.89817 0.90732 0.89744 0.86035 0.86135 0.86065 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.34 2.57 -67.93 -0.17 1.16 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 4 C -0.13 -1.15 4.75 -26.73 -0.13 -1.27 16 5 C -0.11 -1.33 5.10 -26.74 -0.14 -1.47 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.05 16 7 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 8 N -0.76 -18.64 5.41 -59.91 -0.32 -18.96 16 9 C -0.24 -7.11 10.47 -15.06 -0.16 -7.26 16 10 H 0.09 2.79 8.06 -52.48 -0.42 2.36 16 11 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 12 N -0.94 -29.94 13.97 55.49 0.78 -29.16 16 13 Si 0.89 22.46 27.73 -169.99 -4.71 17.74 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 17 N -0.72 -6.33 4.42 -53.80 -0.24 -6.56 16 18 C 0.51 5.61 6.76 -10.98 -0.07 5.54 16 19 O -0.52 -7.63 14.49 -10.32 -0.15 -7.78 16 20 C 0.11 0.94 3.12 -69.08 -0.22 0.73 16 21 H 0.13 0.96 7.41 -51.93 -0.38 0.58 16 22 C -0.16 -1.27 9.06 37.16 0.34 -0.93 16 23 N -0.56 -4.96 2.27 -109.48 -0.25 -5.20 16 24 C 0.53 4.95 6.70 -11.09 -0.07 4.87 16 25 O -0.46 -6.13 15.13 -10.27 -0.16 -6.29 16 26 C -0.16 -0.64 7.03 -26.94 -0.19 -0.83 16 27 C -0.15 -0.52 7.03 -26.93 -0.19 -0.70 16 28 C 0.53 4.15 8.08 -11.08 -0.09 4.06 16 29 O -0.49 -5.24 17.23 5.61 0.10 -5.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 37 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 42 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 43 H 0.40 2.61 8.02 -40.82 -0.33 2.28 16 44 H 0.08 0.85 6.62 -51.93 -0.34 0.51 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.51 7.57 -51.93 -0.39 0.12 16 47 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 49 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -38.99 407.62 -8.22 -47.21 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.40 Total: 4.18 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.00 Total: 3.81 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.04 Total: -59.89 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.21 Total: -19.21 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.99 -8.22 -47.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171117508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.606 kcal (2) G-P(sol) polarization free energy of solvation -38.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds