Wall clock time and date at job start Tue Mar 31 2020 22:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 C 1.52995 * 109.47551 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47710 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47625 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00587 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99572 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00512 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99889 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47237 * 90.00239 * 13 11 9 15 15 H 1.48503 * 109.47163 * 210.00431 * 13 11 9 16 16 H 1.48502 * 109.47066 * 329.99983 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 22 22 C 1.53002 * 109.47419 * 59.99803 * 20 18 17 23 23 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 24 24 C 1.33879 * 122.76486 * 299.70684 * 23 20 18 25 25 O 1.21225 * 125.39168 * 359.97438 * 24 23 20 26 26 C 1.51312 * 109.20501 * 179.84209 * 24 23 20 27 27 C 1.54230 * 103.56009 * 0.38819 * 26 24 23 28 28 C 1.33881 * 122.75931 * 120.00055 * 23 20 18 29 29 O 1.21224 * 125.39848 * 0.02562 * 28 23 20 30 30 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 32 32 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 33 33 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 34 34 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 35 35 H 1.09002 * 109.47285 * 299.99610 * 5 4 2 36 36 H 1.09000 * 109.47465 * 59.99400 * 5 4 2 37 37 H 1.09008 * 109.47326 * 300.00107 * 6 5 4 38 38 H 1.09000 * 109.47087 * 59.99338 * 6 5 4 39 39 H 1.09007 * 109.46548 * 299.99761 * 7 6 5 40 40 H 1.08995 * 109.47272 * 59.99043 * 7 6 5 41 41 H 0.97004 * 119.99565 * 359.97438 * 8 7 6 42 42 H 0.96995 * 119.99890 * 179.97438 * 12 11 9 43 43 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 44 44 H 1.09002 * 109.47075 * 59.99368 * 22 20 18 45 45 H 1.08996 * 109.47407 * 180.02562 * 22 20 18 46 46 H 1.09000 * 109.46986 * 300.00096 * 22 20 18 47 47 H 1.09000 * 110.79948 * 241.78084 * 26 24 23 48 48 H 1.08997 * 110.54759 * 118.87826 * 26 24 23 49 49 H 1.09000 * 110.60860 * 241.26309 * 27 26 24 50 50 H 1.08994 * 110.73920 * 118.35523 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5628 7 6 5.5997 -1.2275 -2.6270 8 7 6.0880 -1.9179 -3.8232 9 6 7.4300 -1.9543 -4.0929 10 1 8.1285 -1.4736 -3.4239 11 6 7.8928 -2.6090 -5.2261 12 7 9.1827 -2.6443 -5.4851 13 14 6.6848 -3.4410 -6.3827 14 1 6.2490 -2.4745 -7.4223 15 1 7.3419 -4.6037 -7.0321 16 1 5.5031 -3.9066 -5.6131 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 1 1.9778 -1.5511 3.8324 22 6 4.0528 -1.2787 3.3212 23 7 2.6997 0.2126 4.7087 24 6 3.4518 1.3201 4.6922 25 8 4.1639 1.6716 3.7764 26 6 3.2694 2.0650 5.9966 27 6 2.2788 1.1817 6.7821 28 6 2.0011 0.0332 5.8367 29 8 1.2635 -0.9013 6.0647 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.8532 0.4371 -1.3574 36 1 3.9994 -1.0727 -0.4261 37 1 3.7865 -2.3851 -2.5188 38 1 3.6401 -0.8757 -3.4507 39 1 5.8884 -0.1772 -2.6708 40 1 6.0340 -1.6868 -1.7390 41 1 5.4606 -2.3493 -4.4242 42 1 9.5061 -3.1021 -6.2767 43 1 2.2490 -1.6318 1.1524 44 1 4.7249 -0.4563 3.0761 45 1 4.4163 -1.7928 4.2108 46 1 4.0162 -1.9790 2.4867 47 1 2.8459 3.0540 5.8216 48 1 4.2178 2.1437 6.5280 49 1 1.3624 1.7312 6.9977 50 1 2.7328 0.8184 7.7040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171117508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:30 Heat of formation + Delta-G solvation = -129.567036 kcal Electronic energy + Delta-G solvation = -29819.386550 eV Core-core repulsion = 25652.691411 eV Total energy + Delta-G solvation = -4166.695139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.10791 -40.84562 -39.62859 -38.16330 -37.06246 -36.85723 -35.42871 -34.79403 -33.28169 -32.17485 -30.79494 -29.08591 -27.10134 -26.15870 -25.66076 -23.70243 -23.35978 -22.58236 -22.13221 -21.62724 -20.33037 -19.63790 -18.76432 -18.33059 -17.69611 -17.42880 -16.93881 -16.65297 -16.37688 -16.10201 -15.86237 -15.67469 -15.29643 -15.21143 -14.89434 -14.87639 -14.79975 -14.56986 -14.35871 -14.19505 -13.91237 -13.70209 -13.44279 -13.35661 -13.14365 -13.00641 -12.96260 -12.95414 -12.51243 -12.29553 -12.11705 -12.09917 -11.90481 -11.80662 -11.57791 -11.56416 -11.48089 -11.42439 -11.03194 -10.99230 -10.65320 -10.16855 -9.33242 -8.05428 -5.40027 0.52855 1.29195 1.36267 1.41441 1.43827 1.48923 1.69072 2.18248 2.47015 3.18295 3.25329 3.27295 3.43470 3.54212 3.62282 3.74406 3.83949 3.87400 3.97938 4.04448 4.14277 4.16884 4.29649 4.34791 4.53711 4.56428 4.60037 4.65820 4.71822 4.74608 4.83956 4.86772 4.88062 4.91294 4.94597 4.98010 5.02508 5.06908 5.21360 5.26937 5.38376 5.47284 5.51915 5.72072 5.78740 6.18803 6.31712 6.38333 6.74922 7.05239 7.09135 7.80991 8.02002 9.16234 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002080 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.778147 B =13455.945396 C =14334.249595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.062 0.938 4 C -0.115 4.115 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.150 3.850 8 N -0.760 5.760 9 C -0.242 4.242 10 H 0.050 0.950 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.247 1.247 17 N -0.706 5.706 18 C 0.507 3.493 19 O -0.567 6.567 20 C 0.103 3.897 21 H 0.142 0.858 22 C -0.158 4.158 23 N -0.567 5.567 24 C 0.519 3.481 25 O -0.512 6.512 26 C -0.145 4.145 27 C -0.139 4.139 28 C 0.524 3.476 29 O -0.521 6.521 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.013 0.987 40 H 0.020 0.980 41 H 0.368 0.632 42 H 0.259 0.741 43 H 0.415 0.585 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.135 0.865 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.755 5.510 27.735 36.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.152 4.152 5 C -0.146 4.146 6 C -0.153 4.153 7 C 0.024 3.976 8 N -0.406 5.406 9 C -0.373 4.373 10 H 0.068 0.932 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.789 3.211 14 H -0.203 1.203 15 H -0.220 1.220 16 H -0.172 1.172 17 N -0.359 5.359 18 C 0.292 3.708 19 O -0.445 6.445 20 C -0.003 4.003 21 H 0.160 0.840 22 C -0.215 4.215 23 N -0.310 5.310 24 C 0.310 3.690 25 O -0.385 6.385 26 C -0.184 4.184 27 C -0.178 4.178 28 C 0.316 3.684 29 O -0.396 6.396 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.038 0.962 41 H 0.201 0.799 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.152 0.848 48 H 0.165 0.835 49 H 0.160 0.840 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.758 6.087 27.423 36.152 hybrid contribution 0.254 -0.822 -1.263 1.528 sum -22.504 5.266 26.160 34.907 Atomic orbital electron populations 1.22100 0.94151 1.03003 1.02088 1.20996 0.94521 0.96561 0.83948 0.92018 1.21845 0.94502 1.02245 0.96644 1.21432 0.95965 1.00038 0.97193 1.21655 0.93066 1.01569 0.98986 1.20839 0.94519 0.94305 0.87967 1.42739 1.03513 1.66571 1.27775 1.19054 0.84061 1.28220 1.05982 0.93164 1.25643 0.97809 1.02066 1.00488 1.69905 1.14305 1.49813 1.29491 0.85288 0.78955 0.77940 0.78867 1.20285 1.21983 1.17152 1.45932 1.66458 1.14683 1.08794 1.20841 0.77178 0.87141 0.85659 1.90690 1.51215 1.17238 1.85383 1.21343 1.01840 0.92461 0.84612 0.84029 1.22108 0.92545 1.01981 1.04909 1.46772 1.42881 1.24282 1.17044 1.21675 0.76788 0.80017 0.90481 1.90767 1.38154 1.68741 1.40809 1.22578 1.04295 1.00832 0.90672 1.22584 1.03435 0.92867 0.98879 1.21697 0.76606 0.87708 0.82416 1.90761 1.36023 1.34874 1.77907 0.90789 0.94319 0.90348 0.89125 0.89149 0.93178 0.91714 0.90810 0.91512 0.96884 0.96185 0.79873 0.93217 0.74798 0.92572 0.89462 0.88125 0.84750 0.83477 0.83989 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.58 2.57 44.99 0.12 2.70 16 3 H 0.06 1.49 7.58 -2.38 -0.02 1.47 16 4 C -0.11 -1.78 4.75 30.59 0.15 -1.64 16 5 C -0.11 -2.36 5.10 30.59 0.16 -2.20 16 6 C -0.11 -3.12 5.33 30.59 0.16 -2.96 16 7 C 0.15 5.85 6.26 86.38 0.54 6.39 16 8 N -0.76 -36.70 5.41 -343.46 -1.86 -38.55 16 9 C -0.24 -14.40 10.47 84.03 0.88 -13.52 16 10 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 11 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 12 N -0.98 -64.51 13.97 21.65 0.30 -64.20 16 13 Si 0.96 45.79 27.73 68.60 1.90 47.69 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 16 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 17 N -0.71 -11.99 4.42 -442.53 -1.96 -13.95 16 18 C 0.51 11.33 6.76 87.66 0.59 11.92 16 19 O -0.57 -17.26 14.49 12.15 0.18 -17.08 16 20 C 0.10 1.82 3.12 44.25 0.14 1.96 16 21 H 0.14 2.05 7.41 -2.39 -0.02 2.03 16 22 C -0.16 -2.42 9.06 71.98 0.65 -1.77 16 23 N -0.57 -9.95 2.27 -738.12 -1.68 -11.63 16 24 C 0.52 9.73 6.70 87.99 0.59 10.32 16 25 O -0.51 -14.43 15.13 12.32 0.19 -14.24 16 26 C -0.14 -0.90 7.03 30.46 0.21 -0.69 16 27 C -0.14 -0.54 7.03 30.46 0.21 -0.32 16 28 C 0.52 7.63 8.08 87.99 0.71 8.34 16 29 O -0.52 -10.80 17.23 -2.86 -0.05 -10.85 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.38 7.75 -2.39 -0.02 1.36 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.37 16.50 5.53 -92.71 -0.51 15.99 16 42 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 43 H 0.41 4.68 8.02 -92.71 -0.74 3.93 16 44 H 0.06 1.21 6.62 -2.39 -0.02 1.19 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 1.14 7.57 -2.39 -0.02 1.12 16 47 H 0.13 0.56 8.14 -2.39 -0.02 0.55 16 48 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 50 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: -1.00 -89.51 407.62 2.92 -86.59 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.37 Total: 23.12 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.26 Total: 13.11 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -5.19 Total: -128.34 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: 0.31 Total: -42.17 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -89.51 2.92 -86.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171117508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.980 kcal (2) G-P(sol) polarization free energy of solvation -89.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds