Wall clock time and date at job start Tue Mar 31 2020 23:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 O 1.21280 * 120.00011 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00066 * 180.02562 * 5 4 2 8 8 C 1.46510 * 119.99903 * 180.02562 * 7 5 4 9 9 H 1.08993 * 110.63753 * 36.68793 * 8 7 5 10 10 C 1.54322 * 110.71993 * 273.54516 * 8 7 5 11 11 N 1.47022 * 107.27019 * 219.44514 * 10 8 7 12 12 C 1.36936 * 125.64685 * 178.97312 * 11 10 8 13 13 H 1.08005 * 120.00053 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99889 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00268 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47158 * 89.99916 * 16 14 12 18 18 H 1.48493 * 109.47339 * 210.00016 * 16 14 12 19 19 H 1.48496 * 109.46788 * 330.00152 * 16 14 12 20 20 C 1.47425 * 108.70411 * 358.94279 * 11 10 8 21 21 C 1.54912 * 104.83107 * 24.12765 * 20 11 10 22 22 H 1.08992 * 111.00231 * 81.07202 * 21 20 11 23 23 O 1.42902 * 110.99876 * 204.92192 * 21 20 11 24 24 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 25 25 C 1.45751 * 117.95294 * 239.73895 * 24 2 1 26 26 C 1.53099 * 110.39170 * 160.74231 * 25 24 2 27 27 C 1.53346 * 108.52559 * 51.11629 * 26 25 24 28 28 C 1.53069 * 108.42605 * 292.30993 * 27 26 25 29 29 C 1.33364 * 117.94608 * 60.00153 * 24 2 1 30 30 O 1.21275 * 118.24119 * 2.24751 * 29 24 2 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 35 35 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 36 36 H 0.96998 * 120.00301 * 0.02562 * 7 5 4 37 37 H 1.09004 * 109.87842 * 338.86215 * 10 8 7 38 38 H 1.08996 * 109.88515 * 100.02466 * 10 8 7 39 39 H 0.97006 * 120.00180 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.36499 * 142.96968 * 20 11 10 41 41 H 1.09005 * 110.36113 * 265.18336 * 20 11 10 42 42 H 0.96708 * 113.99644 * 292.19164 * 23 21 20 43 43 H 1.09006 * 109.30439 * 281.24058 * 25 24 2 44 44 H 1.09009 * 109.29799 * 40.61322 * 25 24 2 45 45 H 1.09003 * 109.80644 * 291.33282 * 26 25 24 46 46 H 1.08996 * 109.68222 * 170.82583 * 26 25 24 47 47 H 1.08998 * 109.67546 * 172.57474 * 27 26 25 48 48 H 1.08998 * 109.67343 * 52.04516 * 27 26 25 49 49 H 1.08998 * 109.40334 * 288.77371 * 28 27 26 50 50 H 1.09005 * 109.40034 * 169.03195 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 8 4.1451 -0.0211 -0.4440 7 7 4.2149 -1.1796 -2.3347 8 6 5.6751 -1.0767 -2.3961 9 1 6.1068 -1.1379 -1.3972 10 6 6.1013 0.2309 -3.0961 11 7 7.2603 -0.0853 -3.9435 12 6 7.9263 0.8005 -4.7477 13 1 7.6081 1.8315 -4.7952 14 6 9.0111 0.3737 -5.5012 15 7 9.3993 -0.8826 -5.4431 16 14 9.9202 1.5823 -6.5979 17 1 11.0207 2.2172 -5.8291 18 1 10.4847 0.8618 -7.7672 19 1 8.9777 2.6286 -7.0690 20 6 7.5873 -1.5139 -3.7833 21 6 6.2642 -2.1741 -3.3213 22 1 5.6062 -2.3653 -4.1688 23 8 6.5192 -3.3762 -2.5919 24 7 2.0183 -0.6905 1.1962 25 6 2.8578 0.0587 2.1227 26 6 2.8768 -0.6211 3.4944 27 6 3.2231 -2.1021 3.2994 28 6 2.0608 -2.7786 2.5684 29 6 1.6713 -1.9669 1.3665 30 8 1.0060 -2.5006 0.5044 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7517 -1.7715 -1.2055 35 1 1.6055 -0.2617 -2.1369 36 1 3.7325 -1.6542 -3.0296 37 1 5.2833 0.6055 -3.7115 38 1 6.3791 0.9766 -2.3512 39 1 10.1576 -1.1808 -5.9694 40 1 7.9111 -1.9378 -4.7339 41 1 8.3620 -1.6433 -3.0275 42 1 6.8883 -4.0911 -3.1285 43 1 3.8726 0.1105 1.7282 44 1 2.4638 1.0696 2.2289 45 1 1.8968 -0.5334 3.9636 46 1 3.6288 -0.1500 4.1272 47 1 3.3712 -2.5753 4.2701 48 1 4.1322 -2.1912 2.7047 49 1 1.2078 -2.8603 3.2420 50 1 2.3650 -3.7755 2.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192944959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:19 Heat of formation + Delta-G solvation = -116.648060 kcal Electronic energy + Delta-G solvation = -31288.229036 eV Core-core repulsion = 27122.094106 eV Total energy + Delta-G solvation = -4166.134931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94275 -40.77432 -39.32644 -37.37079 -36.72893 -36.25275 -35.47970 -33.67158 -32.30138 -30.51462 -30.34760 -29.30610 -28.20869 -26.28683 -25.35289 -24.26751 -22.68493 -22.33155 -21.69618 -21.32660 -19.29198 -19.10216 -18.54625 -18.02578 -17.87640 -17.32308 -16.92803 -16.71804 -16.35879 -16.01288 -15.63556 -15.41102 -15.20413 -15.18924 -14.88078 -14.68311 -14.63654 -14.13412 -14.08035 -13.96824 -13.75244 -13.27032 -13.17904 -13.15338 -12.97470 -12.81189 -12.77499 -12.73652 -12.61118 -12.26323 -12.06913 -11.94790 -11.83603 -11.80232 -11.69703 -11.46035 -11.15342 -10.80496 -10.70252 -10.34916 -10.12474 -9.58759 -8.99697 -7.83746 -5.30390 1.46479 1.48344 1.57140 1.65851 1.69888 2.08143 2.15131 2.46049 3.04980 3.27934 3.58258 3.60399 3.69512 3.84584 3.87621 3.92275 3.94701 3.99459 4.02690 4.17770 4.26818 4.36604 4.41189 4.51878 4.55877 4.58187 4.62728 4.70671 4.80152 4.81469 4.83333 4.91318 4.93862 4.99077 5.04236 5.11243 5.11949 5.33015 5.34169 5.37510 5.41834 5.50125 5.64935 5.66995 6.18609 6.54436 6.62893 6.81709 7.02508 7.23430 7.27540 7.66818 8.29256 9.18070 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.002660 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.504521 B =10524.405761 C =10787.076978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.093 0.907 4 C -0.155 4.155 5 C 0.511 3.489 6 O -0.567 6.567 7 N -0.710 5.710 8 C 0.161 3.839 9 H 0.072 0.928 10 C 0.135 3.865 11 N -0.619 5.619 12 C -0.245 4.245 13 H 0.081 0.919 14 C -0.061 4.061 15 N -0.947 5.947 16 Si 0.984 3.016 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.268 1.268 20 C 0.135 3.865 21 C 0.090 3.910 22 H 0.084 0.916 23 O -0.569 6.569 24 N -0.584 5.584 25 C 0.109 3.891 26 C -0.128 4.128 27 C -0.121 4.121 28 C -0.132 4.132 29 C 0.505 3.495 30 O -0.588 6.588 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.411 0.589 37 H 0.039 0.961 38 H 0.015 0.985 39 H 0.251 0.749 40 H 0.090 0.910 41 H -0.009 1.009 42 H 0.397 0.603 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.049 0.951 49 H 0.117 0.883 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.655 -2.323 15.078 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.111 0.889 4 C -0.195 4.195 5 C 0.300 3.700 6 O -0.446 6.446 7 N -0.361 5.361 8 C 0.055 3.945 9 H 0.090 0.910 10 C 0.008 3.992 11 N -0.347 5.347 12 C -0.374 4.374 13 H 0.099 0.901 14 C -0.254 4.254 15 N -0.596 5.596 16 Si 0.812 3.188 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.193 1.193 20 C 0.009 3.991 21 C 0.029 3.971 22 H 0.102 0.898 23 O -0.376 6.376 24 N -0.314 5.314 25 C -0.013 4.013 26 C -0.166 4.166 27 C -0.159 4.159 28 C -0.172 4.172 29 C 0.295 3.705 30 O -0.471 6.471 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.248 0.752 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.009 0.991 42 H 0.247 0.753 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.067 0.933 49 H 0.135 0.865 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.629 -1.800 15.649 24.396 hybrid contribution 1.216 0.055 -1.455 1.897 sum -17.413 -1.745 14.194 22.532 Atomic orbital electron populations 1.22102 0.92923 1.03444 1.03081 1.20915 0.95060 0.96029 0.83082 0.88900 1.22236 0.89661 1.06176 1.01457 1.21249 0.91146 0.77243 0.80406 1.90609 1.71262 1.43472 1.39262 1.45879 1.06045 1.56915 1.27295 1.21455 0.80769 0.93674 0.98629 0.90961 1.21651 0.90027 0.95111 0.92390 1.44550 1.33523 1.06920 1.49690 1.19453 1.09146 0.91651 1.17132 0.90076 1.25647 0.99329 0.98528 1.01901 1.69963 1.28907 1.15572 1.45144 0.84997 0.78282 0.77795 0.77731 1.21540 1.21504 1.19324 1.22345 0.92211 0.84218 1.00330 1.23262 0.96699 0.84388 0.92718 0.89831 1.86388 1.86617 1.23810 1.40806 1.47340 1.49487 1.11179 1.23375 1.21620 0.94973 0.95542 0.89189 1.21916 1.03955 0.95334 0.95372 1.21634 0.96710 0.95959 1.01570 1.21685 1.01277 0.99196 0.95011 1.20643 0.79109 0.81872 0.88867 1.90566 1.41948 1.70168 1.44425 0.91742 0.89972 0.91810 0.86969 0.85765 0.75214 0.94311 0.96665 0.93969 0.89226 0.99125 0.75329 0.92374 0.89882 0.89735 0.88526 0.88386 0.93261 0.86537 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.08 71.98 0.65 -2.10 16 2 C 0.15 3.24 2.20 44.99 0.10 3.34 16 3 H 0.09 1.95 7.60 -2.39 -0.02 1.94 16 4 C -0.16 -3.54 5.00 29.85 0.15 -3.40 16 5 C 0.51 15.35 7.69 87.66 0.67 16.02 16 6 O -0.57 -20.15 12.92 -3.03 -0.04 -20.19 16 7 N -0.71 -21.54 5.13 -436.91 -2.24 -23.78 16 8 C 0.16 6.17 2.97 46.18 0.14 6.31 16 9 H 0.07 3.15 7.69 -2.39 -0.02 3.13 16 10 C 0.13 5.97 6.99 86.73 0.61 6.58 16 11 N -0.62 -32.41 3.39 -691.98 -2.35 -34.76 16 12 C -0.25 -13.81 10.27 84.03 0.86 -12.95 16 13 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 14 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 15 N -0.95 -55.07 10.09 21.65 0.22 -54.85 16 16 Si 0.98 45.06 29.55 68.60 2.03 47.09 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.13 6.63 5.62 86.86 0.49 7.12 16 21 C 0.09 3.39 4.04 31.99 0.13 3.52 16 22 H 0.08 2.83 8.00 -2.39 -0.02 2.81 16 23 O -0.57 -19.46 13.47 -148.98 -2.01 -21.46 16 24 N -0.58 -12.83 2.24 -802.29 -1.80 -14.63 16 25 C 0.11 2.11 5.75 86.55 0.50 2.61 16 26 C -0.13 -1.70 6.03 30.74 0.19 -1.51 16 27 C -0.12 -1.80 6.03 30.73 0.19 -1.61 16 28 C -0.13 -2.27 6.03 29.71 0.18 -2.09 16 29 C 0.51 11.96 6.88 87.71 0.60 12.57 16 30 O -0.59 -16.94 12.45 -3.02 -0.04 -16.98 16 31 H 0.06 1.40 6.00 -2.39 -0.01 1.39 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.11 2.88 5.73 -2.39 -0.01 2.87 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 10.21 8.52 -92.71 -0.79 9.42 16 37 H 0.04 1.64 8.03 -2.38 -0.02 1.62 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 40 H 0.09 4.82 5.87 -2.39 -0.01 4.81 16 41 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 42 H 0.40 10.13 9.12 -74.05 -0.68 9.46 16 43 H 0.06 1.51 6.30 -2.38 -0.02 1.49 16 44 H 0.08 1.35 8.03 -2.38 -0.02 1.33 16 45 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 49 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -73.81 387.20 -0.81 -74.62 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.50 Total: 33.51 kcal Atomic # 6 Polarization: 25.52 SS G_CDS: 5.92 Total: 31.44 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -6.17 Total: -128.02 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: -2.08 Total: -58.64 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.81 -0.81 -74.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192944959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.026 kcal (2) G-P(sol) polarization free energy of solvation -73.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds