Wall clock time and date at job start Tue Mar 31 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99849 * 2 1 4 4 C 1.52998 * 109.46934 * 124.99941 * 3 2 1 5 5 O 1.42905 * 109.46756 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99887 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47287 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99809 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00114 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.26994 * 35.63157 * 10 9 7 12 12 C 1.53990 * 110.30801 * 273.54374 * 10 9 7 13 13 N 1.47898 * 107.22942 * 242.11183 * 12 10 9 14 14 C 1.46898 * 111.00249 * 214.25640 * 13 12 10 15 15 C 1.50703 * 109.47507 * 176.60648 * 14 13 12 16 16 O 1.21296 * 119.99416 * 6.14071 * 15 14 13 17 17 N 1.34774 * 120.00292 * 186.13610 * 15 14 13 18 18 C 1.37094 * 119.99583 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00525 * 0.02562 * 18 17 15 20 20 C 1.38960 * 119.99524 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99685 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47264 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46521 * 120.00340 * 22 20 18 25 25 H 1.48497 * 109.47042 * 239.99721 * 22 20 18 26 26 C 1.48814 * 105.67397 * 334.90615 * 13 12 10 27 27 C 1.54598 * 110.39073 * 157.78044 * 10 9 7 28 28 H 1.08996 * 110.72608 * 22.56026 * 27 10 9 29 29 C 1.53000 * 110.72155 * 259.27048 * 27 10 9 30 30 H 1.08003 * 120.00010 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00654 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.00654 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46922 * 4.99994 * 3 2 1 34 34 H 1.08995 * 109.47186 * 245.00202 * 3 2 1 35 35 H 1.09003 * 109.47273 * 60.00268 * 4 3 2 36 36 H 1.08998 * 109.47582 * 299.99641 * 4 3 2 37 37 H 1.08993 * 109.47239 * 59.99854 * 6 5 4 38 38 H 1.09003 * 109.47047 * 299.99859 * 6 5 4 39 39 H 0.97004 * 120.00352 * 359.97438 * 9 7 6 40 40 H 1.09003 * 109.92184 * 1.56315 * 12 10 9 41 41 H 1.08997 * 109.91981 * 122.65727 * 12 10 9 42 42 H 1.08996 * 109.47159 * 296.61401 * 14 13 12 43 43 H 1.09002 * 109.46850 * 56.61033 * 14 13 12 44 44 H 0.97003 * 119.99922 * 0.02562 * 17 15 14 45 45 H 0.96997 * 119.99530 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.51827 * 280.54084 * 26 13 12 47 47 H 1.08999 * 110.84165 * 157.56496 * 26 13 12 48 48 H 1.09001 * 109.46673 * 60.00661 * 29 27 10 49 49 H 1.08996 * 109.47131 * 179.97438 * 29 27 10 50 50 H 1.08992 * 109.47475 * 300.00410 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3331 1.1816 5 8 3.7490 2.5710 1.1819 6 6 4.6876 2.7003 2.2517 7 6 5.3787 4.0359 2.1549 8 8 5.0957 4.8016 1.2579 9 7 6.3120 4.3792 3.0646 10 6 6.9843 5.6775 2.9702 11 1 6.2906 6.4366 2.6090 12 6 8.2047 5.5807 2.0360 13 7 9.4025 5.8902 2.8466 14 6 10.4099 6.6004 2.0473 15 6 11.5773 6.9715 2.9252 16 8 11.6229 6.5784 4.0717 17 7 12.5706 7.7401 2.4362 18 6 13.6327 8.0772 3.2347 19 1 13.6738 7.7266 4.2554 20 6 14.6566 8.8701 2.7307 21 7 14.6064 9.2971 1.4890 22 14 16.1036 9.3301 3.8190 23 1 15.9223 8.7281 5.1643 24 1 17.3599 8.8194 3.2139 25 1 16.1792 10.8079 3.9435 26 6 8.9185 6.7328 3.9736 27 6 7.5600 6.0872 4.3453 28 1 7.7090 5.2119 4.9774 29 6 6.6472 7.1046 5.0329 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9352 0.0004 32 1 1.8501 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9313 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2357 2.1130 37 1 5.4271 1.9024 2.1846 38 1 4.1638 2.6309 3.2051 39 1 6.5387 3.7667 3.7818 40 1 8.2821 4.5724 1.6293 41 1 8.1091 6.3019 1.2243 42 1 10.7537 5.9548 1.2392 43 1 9.9691 7.5046 1.6275 44 1 12.5339 8.0547 1.5193 45 1 15.3213 9.8503 1.1371 46 1 8.7783 7.7634 3.6475 47 1 9.6090 6.6878 4.8158 48 1 5.6605 6.6655 5.1809 49 1 7.0712 7.3785 5.9989 50 1 6.5592 7.9939 4.4089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211420571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:21 Heat of formation + Delta-G solvation = -118.128945 kcal Electronic energy + Delta-G solvation = -28755.863449 eV Core-core repulsion = 24589.664303 eV Total energy + Delta-G solvation = -4166.199147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35911 -40.41462 -39.35188 -38.56442 -36.08501 -35.86451 -35.40692 -33.80436 -33.22364 -31.09793 -30.19986 -28.91680 -27.72393 -26.90378 -25.31877 -23.92401 -22.75292 -21.52749 -21.29883 -20.99926 -20.63503 -19.87326 -18.20140 -18.12849 -17.81032 -17.44865 -16.99750 -16.72196 -16.37303 -16.22621 -16.10603 -15.85418 -15.57078 -15.35251 -15.07946 -14.67696 -14.34489 -14.22158 -14.08914 -13.96535 -13.69256 -13.43592 -13.39251 -13.33625 -13.03880 -12.90366 -12.61128 -12.51161 -12.40431 -12.28787 -12.13167 -12.10974 -11.97267 -11.83250 -11.70903 -11.45595 -10.86179 -10.67766 -10.33634 -10.25946 -10.11201 -10.01263 -9.39136 -8.46857 -5.95632 1.34062 1.36525 1.41959 1.55893 1.56577 1.81972 2.03082 2.28101 2.76626 3.00031 3.19831 3.29849 3.47265 3.63840 3.77317 4.01666 4.02673 4.16337 4.18252 4.20657 4.23628 4.29397 4.32242 4.34389 4.41740 4.47090 4.50699 4.51416 4.52676 4.66214 4.78792 4.82081 4.91350 4.92684 5.03993 5.04524 5.10910 5.22114 5.29106 5.41128 5.49231 5.73927 5.80797 5.85959 5.88253 6.05535 6.09945 6.56093 6.59344 7.12152 7.22809 7.54817 8.09752 8.70917 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.001616 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.600031 B =17320.819854 C =17884.047937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.095 4.095 4 C 0.064 3.936 5 O -0.401 6.401 6 C 0.047 3.953 7 C 0.510 3.490 8 O -0.573 6.573 9 N -0.702 5.702 10 C 0.151 3.849 11 H 0.087 0.913 12 C 0.027 3.973 13 N -0.504 5.504 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.610 6.610 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.082 0.918 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.043 3.957 27 C -0.085 4.085 28 H 0.103 0.897 29 C -0.138 4.138 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.419 0.581 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.434 -16.175 1.486 30.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.177 4.177 3 C -0.132 4.132 4 C -0.012 4.012 5 O -0.320 6.320 6 C -0.032 4.032 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.045 3.955 11 H 0.105 0.895 12 C -0.102 4.102 13 N -0.229 5.229 14 C -0.085 4.085 15 C 0.230 3.770 16 O -0.496 6.496 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.100 0.900 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.085 4.085 27 C -0.105 4.105 28 H 0.121 0.879 29 C -0.196 4.196 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.257 0.743 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.082 0.918 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.259 -16.113 1.535 30.000 hybrid contribution 0.894 1.019 -0.292 1.387 sum -24.365 -15.093 1.243 28.688 Atomic orbital electron populations 1.24080 0.95953 1.02704 0.99833 1.22830 0.96152 0.97738 1.01017 1.20642 0.97847 0.96404 0.98352 1.22643 0.94230 0.85266 0.99089 1.87957 1.55190 1.39238 1.49621 1.22326 0.93774 0.94259 0.92846 1.20933 0.79267 0.88940 0.81132 1.90725 1.65050 1.54007 1.35389 1.45810 1.39631 1.19146 1.30997 1.21702 0.92488 0.85793 0.95547 0.89524 1.23353 0.89120 1.02078 0.95654 1.64582 1.08811 1.40939 1.08554 1.21973 0.92177 0.98655 0.95705 1.20567 0.85419 0.82242 0.88768 1.90460 1.80237 1.58378 1.20539 1.41941 1.19181 1.45468 1.14505 1.19722 0.99257 1.30326 0.96775 0.90039 1.26058 1.01283 0.96260 0.97695 1.69688 1.35306 1.36029 1.15269 0.84857 0.77292 0.78129 0.77979 1.19565 1.19714 1.19687 1.23345 0.95848 0.94163 0.95123 1.22297 0.93186 1.00093 0.94882 0.87917 1.21747 0.99215 0.97971 1.00674 0.86950 0.88605 0.85840 0.91587 0.90950 0.91316 0.91564 0.87385 0.87026 0.74300 0.89878 0.93488 0.87593 0.91836 0.77170 0.91348 0.94765 0.90455 0.90715 0.91511 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 67.79 0.97 -0.73 16 2 C -0.16 -1.55 9.52 25.65 0.24 -1.30 16 3 C -0.10 -1.24 6.03 29.85 0.18 -1.06 16 4 C 0.06 0.77 5.92 71.98 0.43 1.20 16 5 O -0.40 -7.82 9.88 -129.94 -1.28 -9.10 16 6 C 0.05 0.62 6.42 71.24 0.46 1.08 16 7 C 0.51 10.73 7.90 87.66 0.69 11.43 16 8 O -0.57 -18.31 16.20 16.01 0.26 -18.05 16 9 N -0.70 -11.95 5.03 -438.38 -2.20 -14.16 16 10 C 0.15 3.38 2.87 45.87 0.13 3.51 16 11 H 0.09 2.17 7.35 -2.39 -0.02 2.15 16 12 C 0.03 0.73 6.48 86.45 0.56 1.29 16 13 N -0.50 -16.67 5.11 -886.82 -4.54 -21.20 16 14 C 0.05 1.70 5.31 85.56 0.45 2.15 16 15 C 0.44 21.26 7.42 87.66 0.65 21.91 16 16 O -0.61 -33.12 13.89 -3.08 -0.04 -33.16 16 17 N -0.57 -29.78 5.29 -306.98 -1.62 -31.40 16 18 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 19 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -50.20 13.05 21.67 0.28 -49.92 16 22 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C 0.04 1.36 5.04 86.59 0.44 1.80 16 27 C -0.09 -1.85 3.37 -9.59 -0.03 -1.89 16 28 H 0.10 1.97 7.74 -2.39 -0.02 1.95 16 29 C -0.14 -2.52 9.16 71.98 0.66 -1.86 16 30 H 0.11 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.10 0.88 7.84 -2.91 -0.02 0.86 16 32 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.42 4.39 8.35 -92.71 -0.77 3.62 16 40 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 41 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 42 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 44 H 0.39 19.69 7.90 -92.71 -0.73 18.96 16 45 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 46 H 0.03 1.11 7.89 -2.39 -0.02 1.09 16 47 H 0.08 2.99 6.47 -2.39 -0.02 2.97 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 50 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -75.92 413.99 -0.57 -76.50 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -0.57 Total: 36.26 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 7.11 Total: 19.25 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -8.08 Total: -116.68 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -1.07 Total: -60.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -75.92 -0.57 -76.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211420571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.632 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds