Wall clock time and date at job start Tue Mar 31 2020 22:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00102 * 2 1 4 4 H 1.09005 * 110.35283 * 27.85637 * 3 2 1 5 5 C 1.54297 * 110.47806 * 265.63479 * 3 2 1 6 6 N 1.47895 * 107.08623 * 242.53089 * 5 3 2 7 7 C 1.46903 * 111.00289 * 214.00340 * 6 5 3 8 8 C 1.50691 * 109.47330 * 307.40060 * 7 6 5 9 9 O 1.21300 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00242 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00307 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99745 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99960 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99707 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00329 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47272 * 89.99477 * 15 13 11 17 17 H 1.48503 * 109.47021 * 209.99746 * 15 13 11 18 18 H 1.48507 * 109.46764 * 329.99309 * 15 13 11 19 19 C 1.48527 * 105.82360 * 334.52306 * 6 5 3 20 20 C 1.54598 * 110.31171 * 149.99952 * 3 2 1 21 21 H 1.08999 * 110.71788 * 22.33479 * 20 3 2 22 22 N 1.46500 * 110.72204 * 259.23013 * 20 3 2 23 23 C 1.34776 * 119.99845 * 157.44472 * 22 20 3 24 24 O 1.21281 * 120.00227 * 0.02562 * 23 22 20 25 25 C 1.50701 * 120.00175 * 180.02562 * 23 22 20 26 26 H 1.09002 * 109.47060 * 60.00522 * 25 23 22 27 27 C 1.52997 * 109.47212 * 300.00467 * 25 23 22 28 28 C 1.53002 * 109.47419 * 180.02562 * 25 23 22 29 29 C 1.53001 * 117.49910 * 248.62497 * 28 25 23 30 30 C 1.52994 * 117.50126 * 180.02562 * 28 25 23 31 31 H 1.08999 * 109.47314 * 300.00314 * 1 2 3 32 32 H 1.09001 * 109.47054 * 60.00264 * 1 2 3 33 33 H 1.09005 * 109.47330 * 180.02562 * 1 2 3 34 34 H 1.09007 * 110.02950 * 123.10306 * 5 3 2 35 35 H 1.08997 * 109.94274 * 1.91715 * 5 3 2 36 36 H 1.09003 * 109.46324 * 67.39942 * 7 6 5 37 37 H 1.08996 * 109.47333 * 187.39360 * 7 6 5 38 38 H 0.97000 * 120.00456 * 0.02562 * 10 8 7 39 39 H 0.97003 * 119.99932 * 180.02562 * 14 13 11 40 40 H 1.09002 * 110.66894 * 280.77248 * 19 6 5 41 41 H 1.09005 * 110.81513 * 157.70633 * 19 6 5 42 42 H 0.96995 * 120.00424 * 337.45702 * 22 20 3 43 43 H 1.09002 * 109.47153 * 299.99998 * 27 25 23 44 44 H 1.08998 * 109.47533 * 59.99628 * 27 25 23 45 45 H 1.08996 * 109.47853 * 179.97438 * 27 25 23 46 46 H 1.09007 * 115.54675 * 34.32560 * 28 25 23 47 47 H 1.09004 * 117.49564 * 359.97438 * 29 28 25 48 48 H 1.08997 * 117.50086 * 145.01519 * 29 28 25 49 49 H 1.09000 * 117.49953 * 214.97795 * 30 28 25 50 50 H 1.09001 * 117.49780 * 359.97438 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3390 2.0193 0.4775 5 6 2.3303 1.7538 -1.4413 6 7 3.7955 1.9365 -1.5242 7 6 4.1382 3.0372 -2.4347 8 6 3.4586 2.8211 -3.7622 9 8 2.7581 1.8458 -3.9333 10 7 3.6292 3.7115 -4.7594 11 6 3.0113 3.5147 -5.9674 12 1 2.3875 2.6462 -6.1197 13 6 3.1867 4.4330 -6.9953 14 7 2.5941 4.2445 -8.1530 15 14 4.2650 5.9354 -6.7317 16 1 5.6634 5.6144 -7.1143 17 1 3.7670 7.0553 -7.5702 18 1 4.2215 6.3309 -5.3010 19 6 4.2460 2.2309 -0.1399 20 6 3.3755 1.2849 0.7249 21 1 3.7923 0.2778 0.7339 22 7 3.2458 1.8025 2.0893 23 6 4.1549 1.4677 3.0263 24 8 5.0805 0.7383 2.7399 25 6 4.0212 1.9996 4.4300 26 1 3.0725 1.6709 4.8543 27 6 4.0649 3.5287 4.4023 28 6 5.1737 1.4723 5.2872 29 6 4.8322 0.4673 6.3890 30 6 5.2163 1.9018 6.7550 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8258 2.6950 -1.6602 35 1 2.0109 0.9882 -2.1484 36 1 3.8040 3.9815 -2.0049 37 1 5.2181 3.0660 -2.5797 38 1 4.1896 4.4913 -4.6229 39 1 2.7168 4.8854 -8.8707 40 1 4.0513 3.2728 0.1147 41 1 5.3040 1.9980 -0.0190 42 1 2.5056 2.3860 2.3184 43 1 5.0136 3.8574 3.9780 44 1 3.2441 3.9047 3.7915 45 1 3.9678 3.9135 5.4174 46 1 6.1256 1.3492 4.7706 47 1 3.7864 0.1820 6.5035 48 1 5.5594 -0.3174 6.5976 49 1 6.1965 2.0613 7.2044 50 1 4.4236 2.5604 7.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212080955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:17 Heat of formation + Delta-G solvation = -73.920654 kcal Electronic energy + Delta-G solvation = -30039.367014 eV Core-core repulsion = 25875.084883 eV Total energy + Delta-G solvation = -4164.282131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58477 -39.47125 -38.24361 -37.50646 -36.52850 -34.65075 -33.90810 -32.60485 -31.72631 -30.36546 -28.22890 -27.07853 -26.14279 -25.35748 -24.02679 -22.62553 -22.06428 -21.22045 -20.95570 -19.91464 -19.39599 -18.30740 -17.81940 -17.03489 -16.45323 -15.95171 -15.72153 -15.51959 -15.35517 -15.01648 -14.79362 -14.64783 -14.49558 -14.28620 -13.85898 -13.46579 -13.38898 -13.24184 -13.00108 -12.71429 -12.54598 -12.48319 -12.21262 -12.15794 -11.99890 -11.81677 -11.80569 -11.53597 -11.37747 -11.31802 -11.06439 -10.83294 -10.70592 -10.62070 -10.37962 -10.00276 -9.99366 -9.71929 -9.56908 -9.25783 -8.55980 -8.21714 -8.08241 -6.33659 -3.85188 2.43142 2.75750 2.99894 3.05324 3.13230 3.46618 3.64113 3.70900 4.02565 4.08209 4.19214 4.27132 4.43552 4.51154 4.64739 4.68821 4.76498 4.83081 4.91632 4.99239 5.03893 5.15797 5.17798 5.21362 5.25012 5.30378 5.32924 5.40286 5.44437 5.53728 5.56108 5.63588 5.66678 5.70094 5.76281 5.76836 5.82147 5.87792 5.96074 5.97552 6.21118 6.49045 6.98400 7.05475 7.20618 7.24367 7.55130 8.01286 8.11338 8.56682 8.92151 9.39244 9.79055 10.79280 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002315 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.659110 B =12091.140223 C =13218.359836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.070 3.930 4 H 0.067 0.933 5 C 0.031 3.969 6 N -0.487 5.487 7 C 0.033 3.967 8 C 0.449 3.551 9 O -0.561 6.561 10 N -0.589 5.589 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.027 3.973 20 C 0.145 3.855 21 H 0.116 0.884 22 N -0.723 5.723 23 C 0.521 3.479 24 O -0.528 6.528 25 C -0.080 4.080 26 H 0.096 0.904 27 C -0.142 4.142 28 C -0.135 4.135 29 C -0.177 4.177 30 C -0.179 4.179 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.397 0.603 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.117 0.883 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 0.808 29.025 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.011 3.989 4 H 0.085 0.915 5 C -0.097 4.097 6 N -0.212 5.212 7 C -0.098 4.098 8 C 0.235 3.765 9 O -0.443 6.443 10 N -0.228 5.228 11 C -0.433 4.433 12 H 0.138 0.862 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.706 3.294 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.196 1.196 19 C -0.102 4.102 20 C 0.039 3.961 21 H 0.134 0.866 22 N -0.375 5.375 23 C 0.308 3.692 24 O -0.404 6.404 25 C -0.101 4.101 26 H 0.114 0.886 27 C -0.200 4.200 28 C -0.154 4.154 29 C -0.214 4.214 30 C -0.216 4.216 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.232 0.768 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.877 -0.956 28.243 28.273 hybrid contribution -0.185 2.650 0.324 2.676 sum 0.692 1.693 28.567 28.626 Atomic orbital electron populations 1.22815 0.81012 1.02910 0.99930 1.87991 1.19622 1.26431 1.94844 1.23369 0.93719 0.85442 0.96386 0.91480 1.23464 0.88455 1.02549 0.95216 1.64545 1.12445 1.39193 1.05005 1.22171 1.01777 0.92438 0.93450 1.19602 0.86209 0.85328 0.85340 1.90548 1.41842 1.29904 1.82006 1.42194 1.45349 1.22452 1.12794 1.19427 1.26848 1.10563 0.86487 0.86230 1.25045 0.97705 0.98181 0.95244 1.69622 1.42557 1.36722 1.03094 0.86671 0.81311 0.83080 0.78310 1.19526 1.20187 1.19578 1.23612 1.00845 0.97206 0.88547 1.21902 0.94470 0.99946 0.79753 0.86567 1.46006 1.29468 1.51827 1.10182 1.20524 0.81831 0.80279 0.86613 1.90722 1.32048 1.36065 1.81523 1.20865 0.99717 0.97229 0.92297 0.88598 1.21759 1.02793 0.92457 1.02944 1.22046 1.00026 1.03537 0.89749 1.23007 1.02307 0.92901 1.03220 1.22969 1.03058 0.98022 0.97515 0.94477 0.93445 0.89522 0.93376 0.86490 0.93186 0.88703 0.79686 0.91590 0.93516 0.89008 0.76830 0.91696 0.92135 0.91259 0.86483 0.88907 0.88671 0.88668 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 101.05 1.10 1.41 16 2 O -0.37 -5.16 10.31 -35.23 -0.36 -5.53 16 3 C 0.07 0.89 3.22 -25.21 -0.08 0.81 16 4 H 0.07 0.67 7.41 -51.93 -0.38 0.29 16 5 C 0.03 0.51 4.90 -2.60 -0.01 0.50 16 6 N -0.49 -8.06 5.26 -231.70 -1.22 -9.28 16 7 C 0.03 0.56 5.48 -4.98 -0.03 0.54 16 8 C 0.45 10.11 7.35 -10.99 -0.08 10.03 16 9 O -0.56 -14.67 13.37 5.54 0.07 -14.60 16 10 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 11 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 12 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 15 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 19 C 0.03 0.36 6.24 -1.90 -0.01 0.34 16 20 C 0.14 1.81 3.12 -66.07 -0.21 1.60 16 21 H 0.12 1.79 7.56 -51.93 -0.39 1.39 16 22 N -0.72 -6.78 5.08 -52.01 -0.26 -7.04 16 23 C 0.52 5.53 7.15 -10.99 -0.08 5.45 16 24 O -0.53 -7.84 15.33 5.56 0.09 -7.75 16 25 C -0.08 -0.58 2.88 -91.77 -0.26 -0.84 16 26 H 0.10 0.56 7.90 -51.93 -0.41 0.15 16 27 C -0.14 -0.77 8.93 37.16 0.33 -0.44 16 28 C -0.14 -1.08 4.76 -90.62 -0.43 -1.52 16 29 C -0.18 -1.26 10.17 -26.76 -0.27 -1.53 16 30 C -0.18 -1.08 9.73 -26.76 -0.26 -1.34 16 31 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.79 7.59 -51.93 -0.39 0.40 16 35 H 0.12 2.35 6.56 -51.93 -0.34 2.01 16 36 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.05 0.53 7.85 -51.93 -0.41 0.12 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.40 2.57 7.78 -40.82 -0.32 2.25 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 45 H 0.07 0.30 7.29 -51.93 -0.38 -0.08 16 46 H 0.12 1.17 7.47 -51.93 -0.39 0.79 16 47 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 48 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.46 7.61 -51.93 -0.40 0.06 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -34.54 402.41 -8.37 -42.91 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -8.20 Total: 12.08 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -0.55 Total: 7.36 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.76 Total: -55.03 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.20 Total: -27.88 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.54 -8.37 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212080955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.014 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds